TCONS_00019096 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019096
Unique Name	TCONS_00019096
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1445

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000319:234973..241586+

transcript sequence

>TCONS_00019096 ID=TCONS_00019096|Name=TCONS_00019096|organism=Clytia hemisphaerica|type=transcript|length=1445bp
CTAGCAAGCAACTGAAAGATTATATGATGTTTACAAAAAGTCTCGAAtac
taaatcaaaacaaataaaacaaagaGGAAGAGACACCACATGCATTTGag
tcaaattttctttggttaTCTTAAACAATATCCTCCCTAACATAATTGGT
GTGGAGCGTGTTTTGAGACGAAAACGGCGGCGATTTTAATCAATAAAGAA
AGTTCAAATTTAACAGACAATTTACTGACTGAAAAACATTTTGGAGACGC
AGTTTTATTTTACAggaagtgtttttaaatcaaaCATGAAGAAGGAAGGA
GCTAACGATGTTGGAGAATTTTCAGTGCCAGAGGTTGGCTTCTTTGAAGG
GACTGAGAAATTATTGGAGGTCTGGTTCACCAGCAACCTTGAAGATGGAC
TGACCAACAATAACAATAACGGAGATCTCAGAATCATTCCAAGGGAAAAA
TTGGATCAGTTACTTGGTATTGTAGATGCTGAGATCATTTCAGTGGACAA
AAACGAGTTTATCGACTCCTATGTTTTGAGCGAGAGTAGTATGTTTATAT
CAAGCAACCGCTTCATTATCAAGACCTGTGGCATCACCAAGCTCTTATTT
GCAGTTCAACCACTCATTAATATCGTCCAACGGTTCACTGGTATGAAACT
CATGaatttctttTACTCAAGACGAGTGTACTTGAAACCGGAGAACCAAA
TTGGAATCCATCAAACCTTCAACTCAGAGGTTGAATATTTACAGAAGATC
GTACCAGATGGTTCTCCTTACATCATCGGATCCAAACAAACAGAACAATG
GTATCTTTTCACATCGGATAACGTGTCCGATTTTATCGAGTCTGATGACG
TCACTCTCGAGATTTTGATGTCCGATATGGATGAAACAGCTATGGTTGAa
tttacaaaattgaaaaatgaatctTCGGCTGACGTTATTAAGAATTCTGG
AATCGAGAAGATATTGCCCGGTTCAATTAATGATGGTTGCTTATTTAATC
CGATCGGGTTTTCGTTGAATGGTCTAAACAAAGAGGCTTATTACACTATA
CACGTGACACCTCAACCGAGTTGTTCGTACGTCAGCTTCGAGACGAACAT
CAAGAAGGAAAGTTATGACCACATCGTCAATAAAGTTTTGGATATTTTCA
AACCGAACAAATTCATCATCACTCTGTTCTCCACCAAGGGCTCACAATGT
GGAGATGCTGGTGAAGTGTTGAAGAAGGTTTCCTTGAATAATTACGCATG
CGCAGATGAATGTTCACAACAACTCAAGAATTATACTTTAGCATATCGCG
CATATTGTAAACAACCCAATTGACTAGAAGATCTTTCTCATTTAATGACT
TCAAATTGTTGTATCGTTTTACCTCGATTCCTTTGTTAACCTCCATTTAC
CTCTGCAGATCATTTCTTTTAccaattgtaaaattttctCCGGGG

Run BLAST on NCBI

transcript from alignment at sc0000319:234973..241586+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019096 ID=TCONS_00019096|Name=TCONS_00019096|organism=Clytia hemisphaerica|type=transcript|length=6614bp|location=Sequence derived from alignment at sc0000319:234973..241586+ (Clytia hemisphaerica)
CTAGCAAGCAACTGAAAGATTATATGATGTTTACAAAAAGTCTCGAAtac
taaatcaaaacaaataaaacaaagaGGAAGAGACACCACATGCATTTGag
tcaaattttctttggttaTCTTAAACAATATCCTCCCTAACATAATTGGT
GTGGAGCGTGTTTTGAGACGAAAACGGCGGCGATTTTAATCAATAAAGAA
AGTTCAAATTTAACAGACAATTTACTGACTGAAAAACATTTTGGAGACGC
AGTTTTATTTTACAggaagtgtttttaaatcaaaCATGAAGAAGGAAGGA
GCTAACGATGTTGGAGAATTTTCAGTGCCAGAGGTTGGCTTCTTTGAAGG
GACTGAGAAATTATTGGAGGTCTGGTTCACCAGCAACCTTGAAGATGGAC
TGACCAACAATAACAATAACGGAGATCTCAGAATCATTCCAAGGTtggtt
tttttttacaataatgTTTGATCAGAAAGTCGACTTTTTGTATTTCCTAA
CCTTTTGAAGGCACTTTCGTTGCATTTTGTCTGTTTATTTTTAAGTTTCT
atgttttaaaaacatataTTTTAAATCATCATTAATTGGCAGCAAAGTAA
TTCCCAATGCCCAATCAATTGTTCTAAAATCTCGCTTACTGCTTTTTGAA
TGACATCTGAAAACACTCTTGGCAAATAATCATTTCTATTGAACATTCaa
accttcttttttttattcgtCAGGGAAAAATTGGATCAGTTACTTGGTAT
TGTAGATGCTGAGATCATTTCAGTGGACAAAAACGAGTTTATCGACTCCT
ATGTTTTGAGGTAGGTTTCATATAAACCTTTTATTTTAAGTTCTGAAGTT
TCGTGTGTATCCCTTATAATTAGTATCTTTTTGACAATATTACCTTCTAA
CTCCAACTGTTTTTGCCATACNCTTATAATTAGTATCTTTTTGACAATAT
TACCTTCTAATTCCAACTGTTTTTGCCATACCCAGTATTATGACTGGCGA
TGTGCTGTTGCTTTTGCGttagcaaaaacaaaaaatgttttgtctaCTCA
CTTATTAATTTAGAGACtgctaccgggtgcgccacaaaaaagtttctctt
tttaaagtgaattttctcgaggtCTAGAAATGTAGAAATAGCCAATCCTT
TTTCATTGGatagaagaaagataaacttaaattttgatgggtcatttata
aaatttggttcattagaacaaaagttatgctcaatttaataaaaaagtta
ctttcagaaaatgctcaaaaacgttaaaaattgacctatcaaattgAACA
GGAGCATAATTAAATGATGCCTCAGTATTTTCGTTTGagtaatcaaaaat
gataattagctgtctaaatgaccttttgttataattATAAAGGAAGGtta
aatttcaatgaaaggaagaaaattcgtcgaaaaaggcaaattttcgaaaa
attcataaaaatacatcaaatatgggtttcgaggtggATCCagtcttaca
tagactttatccagtctagaaccaaaaatctgaggaaaatttcggtaaaa
gtaaattagattgattttgatgaagattttaaaccctttcgacccttcga
tttcaaaattaatgtgtttagttactgaaaaatgctcttaatcatgtaaa
ggctattgccattgccaaatttaaaataacaaTTTGATAGGCaaaatttt
aacgttttcgagcactttctgaaagtaacttctttattcaattaagcata
acttttgatctaatgaatcaaatttaataaatgacccatcaaaatttaag
tctatctttctattctccaatgaaatagaaatgattcttttaaaattttt
agatttcgagaaaattagttccaaagagagaaacttttttgtggcgcacc
cgttatatattttataattgATTTGTAACGGAATATTCCCATGCAAAAAT
GAAACTTTATATCTTCTATCTTTGTAGCGAGAGTAGTATGTTTATATCAA
GCAACCGCTTCATTATCAAGACCTGTGGCATCACCAAGCTCTTATTTGCA
GTTCAACCACTCATTAATATCGTCCAACGGTTCACTGGTATGAAACTCAT
GGTAAGATGTGTTTTTTCAAGTGGGTTTTTATGTTTGGTACAATAGAATG
TGACATTGTCATTCCTTACCTATCTGCTCCTTTCTAACTCCTTTCATTTA
CTAAAGATAATACTTTAAAGCCACCAAAACGAGCATAGAAAGTCAATGTC
ATCAGGTGGCTCGATCTAAAAAAGCTATCTTTCTAtaagaaactaaaata
aaagaCTGCATTAAGCCACGTTTCGTTTTCATGTGCTCAAGCTCTGTACA
AGAAAATAGACTTTTAAATTGTTCAAACATTTACACATTTCAAGAGTACA
TACTAGAAACCAGCTAGGACTCCTTTCGTTGACAATCTGATTCGATCATA
GTATCATCTAATGTTTCGCACAGGAAGAGCTAGCGGTTAGATTTGTTTCA
ACCTTCTTGATCTGTCTTTCCACACCTTGAAGATGattctatttttcaga
atttctttTACTCAAGACGAGTGTACTTGAAACCGGAGAACCAAATTGGA
ATCCATCAAACCTTCAACTCAGAGGTAATACTTGAAGTTTTTTTGGATAA
CCTAGTGCGCTTAGtgatgatttttttccttttaggaTTTTACAATTTGA
ATGTAAAATATATTTAGTAGTCAGTGAAACTGTGCTTGACTCCTTGACGT
actcaaaaagctaaaaaatcgcatttttatgattttttaatgcCTAAACT
TTGAATCGAGTTATCTCGGCTCTGGTGACAACTAAACCCTTAATGTTTGG
TACCGTCGGAAAGCTCTTTCAAAGCTCTATCTTTTTAGCCAGATTTTTGA
ATTAGGTTCTAAATCAAAACTACCGGCAGCCAAAAATATCTCCCGAGAGA
ACAAAATTTCGCTGGTGTGACCTGGTGTGACGTCAACAtggcatgaaccc
ccccccagcccgcagggggggggctacaaccaaaatcttcctgaaaaagg
ctgggggctggattttttttgaatttcagggggtacctatgatctctggg
ggtatctaacttttatgcagtaaggtctgggggcttgggaactatatttt
atcttgctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNatattttatcttgcttttatctaactat
cattattctttttaattgtaaaaatatacaattttttcatttcttgacat
atactcaagtcacagggggtacctattttcttagggggtacctaaacccc
tggtccatgccatgtTCAAGGAGTTaatttatacaaaattttacttttta
actttttacagGTTGAATATTTACAGAAGATCGTACCAGGTAAAAGTATC
TTATGTTTCTCATTTACTATCCGTATCGTCTCGTACCGCCTTTAAAGCCC
CTAAacaatctgtctcctgtctcGTCTGCTGATCAACAATACTCTAAATG
TGGAATTGAGTTGTATCCAAATTCATTTCGGgtaaaatttgatatttggG
GCTGAACATATGCTTAACCAATGCTTAAGTTTTATCAAGATTTGAGCCTG
GATATTTTGTATATAGAAAAATGTATCGGAAACGAAATCAAATAATAACG
TATTAATTATTATTTCTCTTAGATGGTTCTCCTTACATCATCGGATCCAA
ACAAACAGAACAATGGTATCTTTTCACATCGGATAACGTGTCCGATTTTA
TCGAGTCTGATGACGTCACTCTCGAGATTTTGATGTCCGATATGGATGAA
ACAGCTATGGTTGAatttacaaaattgaaaaatgaatctTCGGCTGACGT
TATTAAGGTACTCACAAAGAAAGAAATGTTAAGCATTTGATTTGTATTTG
AATTGGAAAACGACCGCATGTGCTtcagtctgaatcgcagacctctatag
atatacttcctatatagaaACTTTTCATTATAAGAATATGAAACTTTTTC
GCTaaaggatgagcagaagcctacatGTGCTTGCAAGAATCAGACTCCTT
GAAATCGGACTTTCACAGTGAACCTTGAAAAATTGCTACATTTTGATGAC
AAAGTGAACAATTGGGAGGCaattttatctattttatcCTATTATTACTG
AAGACACTTTTTGTATTGAATCTTCACTGCTATACTGTTGTAACTTTCTT
CGCTTTTTTGTCTATTCTAGAATTCTGGAATCGAGAAGATATTGCCCGGT
TCAATCAATGATGGTTGCTTATTTAATCCGATCGGGTTTTCGTTGAATGG
TCTAAACAAAGAGGCTTATTACACTATACACGTGACACCTCAACCGAGTT
GTTCGTACGTCAGTTTCGAGACGAACATCAAGAAGGAAAGTTATGACCAC
ATCGTCAATAAAGTTTTGGATATTTTCAAACCGAACAAATTCATCATCAC
TCTGTTCTCCACCAAGGTAAGTAATGGTCGCTTCTATCatctaggctacg
tcatatattccttcgtttcgagcgtagaactcctactcttcggaaTATGC
GGCNATTTCTCTTAGATGGTTCTCCTTACATCATCGGATCCAAACAAACA
GAACAATGGTATCTTTTCACATCGGATAACGTGTCCGATTTTATCGAGTC
TGATGACGTCACTCTCGAGATTTTGATGTCCGATATGGATGAAACAGCTA
TGGTTGAatttacaaaattgaaaaatgaatctTCGGCTGACGTTATTAAG
GTACTCACAAAGAAAGAAATGTTAAGCATTTGATTTGTATTTGAATTGGA
AAACGACCGCATGTGCTtcagtctgaatcgcagacctctatagatatact
tcctatatagaaACTTTTCATTATAAGAATATGAAACTTTTTCGCTaaag
gatgagcagaagcctacatGTGCTTGCAAGAATCAGACTCCTTGAAATCG
GACTTTCACAGTGAACCTTGAAAAATTGCTACATTTTGATGACAAAGTGA
ACAATTGGGAGGCaattttatctattttatcCTATTATTACTGAAGACAC
TGTTTGTATTGAATCTTCACTGCTATACTGTTGTAACTTTCTTCGCTTTT
TTGTCTATTCTAGAATTCTGGAATCGAGAAGATATTGCCCGGTTCAATTA
ATGATGGTTGCTTATTTAATCCGATCGGGTTTTCGTTGAATGGTCTAAAC
AAAGAGGCTTATTACACTATACACGTGACACCTCAACCGAGTTGTTCGTA
CGTCAGCTTCGAGACGAACATCAAGAAGGAAAGTTATGACCACATCGTCA
ATAAAGTTTTGGATATTTTCAAACCGAACAAATTCATCATCACTCTGTTC
TCCACCAAGGTAAGTAATGGTCGCTTCTATCatctaggctacgtcatata
ttccttcgtttcgagcgtagaactcctactcttcggaaTATGcggctcca
ggcttttaggccttacttacgaagagtaggagttttacgctcgaaacgaa
ggaagatataaCGTAGCCTAAGAACTCCTTCTCTTCGGGATATGCGCatt
gctcttgttttgaatattgaatttcttCGAAAACATCGCATGCGCAATGa
gattttgatgaaacaatAGACAGTTTCGAAACAAAAGCCAATCATTCTTT
TACTTTAATTAATCTAttgataaacttcttttgtTTAGAATTTCTATTAT
GTTTAATCCTATTAAAAGGCGAATTCCCTGTGAGGATCACTAGCGGCCGC
CCCTGGgcgtgcctatagaccaagaatAAGGTCTAATAAggtctaaaagc
ctggagctggcTATCATCATATTTTACTATTCTTAAcattaaaagtctga
aaattcGGAGTGGAAGATGTTTTTGAAGCCAACAACAAatgtaaactttt
tttattggtGACCCTACTAGTACCTGATTTCTAGCTTAATTCAAATCTGA
AAGAGAAATTTCCATTGATAACAAAGAAAGGGTTTAGATATAGATTTGTt
ccatttttaagaaaacgagaCTTATTTATCTCAATTTAGAATCAACCTTA
GGCTCAAATTTCATAATTGGTTGAAAATATACTATGGAAATTTCCAACTT
TTTNACCTTAGGCTCAAATTTCATAattggttgaaaaaatactatgaaaa
tttccaacttttatttaatccaaaatttcaaactggaATAAAAGCTTGAA
ACTTGAGATTTAGACAGGTTTTGGTAACACGGTGACAAGCTGACAAGTTT
CCAAGGGGAAGGGCGTGGTAGATAATTTACGATAAAAACATACCTTTTTC
ATTCCAGGGCTCACAATGTGGAGATGCTGGTGAAGTGTTGAAGAAGGTTT
CCTTGAATAATTACGCATGCGCAGATGAATGTTCACAACAACTCAAGAAT
TATACTTTAGCATATCGCGCATATTGTAAACAACCCAATTGACTAGAAGA
TCTTTCTCATTTAATGACTTCAAATTGTTGTATCGTTTTACCTCGATTCC
TTTGTTAACCTCCATTTACCTCTGCAGATCATTTCTTTTAccaattgtaa
aattttctCCGGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010709	XLOC_010709	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000319	supercontig	sc0000319:234973..241586 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.82653	3.3626	4.63469	4.47748	0.0746898	3.18374	5.02658	4.67757	11.4426	9.84397	11.1443	12.8165	17.5129	11.1063	1.84618	3.08818	1.37811	1.84216	1.11538	1.07339	5.75787	9.09902	3.42288	4.06494	3.77923	1.7962	3.52036	1.76607	1.71965	1.845

Blast

[Close]

BLAST of TCONS_00019096 vs. Swiss-Prot (Human)
Match: DCAM (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 3.295e-82
Identity = 142/328 (43.29%), Postives = 206/328 (62.80%), Query Frame = 1

Query:  340 FFEGTEKLLEVWFTSNLEDGLTXXXXXGDLRIIPREKLDQLLGIVDAEIISVDKNEFIDSYVLSESSMFISSNRFIIKTCGITKLLFAVQPLINIVQRFTGM-KLMNFFYSRRVYLKPENQIGIHQTFNSEVEYLQKIVPDGSPYIIGSKQTEQWYLFTSD-NVSDFIESDDVTLEILMSDMDETAMVEFTKLKNESSADVIKNSGIEKILPGSINDGCLFNPIGFSLNGLNKEA-YYTIHVTPQPSCSYVSFETNIKKESYDHIVNKVLDIFKPNKFIITLFSTKGSQCGDAGEVLKKVSLNNYACADECSQQLKNYTLAYRAYCKQ 1314
            FFEGTEKLLEVWF+    D    N  +GDLR IPR + D LL  V   IISV K +  ++YVLSESSMF+S  RFI+KTCG T LL A+ PL+ + + ++G   + +FFYSR+ ++KP +Q   H+ F  E+E+L  I P+G+ Y +G   ++ WYL+T D   S  I   D TLEILMS++D   M +F      ++ DV + SGI  ++PGS+ D  +FNP G+S+NG+  +  Y+TIH+TP+P  SYVSFETN+ + SYD ++ KV+++FKP KF+ TLF  + S+C       +K+    +   D  S    +Y   + ++ K+
Sbjct:    6 FFEGTEKLLEVWFSRQQPDA---NQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKI--EGFKRLDCQSAMFNDYNFVFTSFAKK 328

The following BLAST results are available for this feature:

BLAST of TCONS_00019096 vs. Swiss-Prot (Human)

BLAST of TCONS_00019096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DCAM	3.295e-82	43.29	S-adenosylmethionine decarboxylase proenzyme OS=Ho...	[more]

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TCONS_00019096 (transcript) - C. hemisphaerica