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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019093 ID=TCONS_00019093|Name=TCONS_00019093|organism=Clytia hemisphaerica|type=transcript|length=2918bpRun BLAST on NCBI protein sequence of TCONS_00019093-protein >TCONS_00019093-protein ID=TCONS_00019093-protein|Name=TCONS_00019093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp MWPNQILSSLLLNFVYKDVCYDGYGCFSNAPPYDISFALLPRDPSILNTTRun BLAST on NCBI transcript from alignment at sc0000319:207455..216776+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019093 ID=TCONS_00019093|Name=TCONS_00019093|organism=Clytia hemisphaerica|type=transcript|length=9322bp|location=Sequence derived from alignment at sc0000319:207455..216776+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000319:207455..216776+ >TCONS_00019093 ID=TCONS_00019093|Name=TCONS_00019093|organism=Clytia hemisphaerica|type=CDS|length=12852bp|location=Sequence derived from alignment at sc0000319:207455..216776+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019093 vs. Swiss-Prot (Human)
Match: LIPR1 (Inactive pancreatic lipase-related protein 1 OS=Homo sapiens GN=PNLIPRP1 PE=1 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 4.193e-59 Identity = 142/415 (34.22%), Postives = 208/415 (50.12%), Query Frame = 3
Query: 240 KDVCYDGYGCFSNAPPYDIS----FALLPRDPSILNTTYYWHTREESKPEVFKAPFRKSPS------MKPKDKTYIVTHGFIENYGRFWVKPMINELLKNNDCNVIFVDWKDGAWYPYNQAFGDARVVAVEISQLIIRLHQEGMVSLDSLHLIGFSLGAHVMGRVGHLLKDQHLHVSRITGLDPAGPKLAEDDTHRNISLDETDAQFVDIIHSDAETPLL-----GTLKRQGHVDFYPNGGLHQPGCKKTTSN--FDLFKPADTIFDLVSCSHYRAIIYFIRSINHPHAFKAFKCKSYKAFLKGECTNCRKDEDACQHQGFHVSRNA------RGKYYLLTMKKKPFSGHHYHVCMKTGNIPYASLSGMIDFRLFGEKGTTQIHTIDRDILHTRGSSTHLTFVTPKNLGEILKMK 1415
K+VCY+ GCFS+ P+ + +LP P + T + +T E P F+ PS + KT + HGFI+ WV M +L + + N I VDWK G+ Y QA + RVV +++Q++ L E +HLIG SLGAHV G G + +SRITGLDP + + + T + LD +DA FVD+IH+DA PL+ GT ++ GH+DF+PNGG PGCKK + DL D V+C+H R+ Y++ SI +P F A+ C SYK+F +C C + C G + + A + K++L T + F+ Y V + + + +G I LFG KG T ++I R IL GS+ F ++G I K+K
Sbjct: 18 KEVCYEDLGCFSDTEPWGGTAIRPLKILPWSPEKIGTRFLLYTNE--NPNNFQILLLSDPSTIEASNFQMDRKTRFIIHGFIDKGDESWVTDMCKKLFEVEEVNCICVDWKKGSQATYTQAANNVRVVGAQVAQMLDILLTEYSYPPSKVHLIGHSLGAHVAGEAG----SKTPGLSRITGLDPV--EASFESTPEEVRLDPSDADFVDVIHTDA-APLIPFLGFGTNQQMGHLDFFPNGGESMPGCKKNALSQIVDLDGIWAGTRDFVACNHLRSYKYYLESILNPDGFAAYPCTSYKSFESDKCFPC--PDQGCPQMGHYADKFAGRTSEEQQKFFLNTGEASNFARWRYGVSI---TLSGRTATGQIKVALFGNKGNTHQYSIFRGILKP-GSTHSYEFDAKLDVGTIEKVK 417 The following BLAST results are available for this feature:
BLAST of TCONS_00019093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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