TCONS_00019091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019091
Unique NameTCONS_00019091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019091 ID=TCONS_00019091|Name=TCONS_00019091|organism=Clytia hemisphaerica|type=transcript|length=561bp
ttcagagCCTCACATTGACAACTAAACATGGCCGTAAAGACAACGAAGTA
CTTGACGGTATCCCAAAATATGAGATTGCGGCTCAAGGTTACATCAGAAC
GCAATTTCATCCTGATCCTCTTCTTGAAGATAGTGTTCATTTTTCGTTTA
CTACAAGTGCTGGAAATGTCCATGATTTTGAGATTACTTTCGATAAATCA
GAAAACAAGTGTTATGGTGAAGGGGAAAAAGATGAATTTGACGctgtttt
gaagaaattgtCAAACGAGGCGATCTTTTTACAAGGATTACCCTACAATG
TGCGCGATGAAAAGCCAAGACCATACGAAGGTAGTTTTCCGTGTAATAGT
GGCTTCCGACTCAACTCTATCAAGTTTGAATACCAGCGTGGTTTTCCGGT
CCGTTCTTTATATCACATTACCGTTAGCTGGACTGATGGTAATAAGCAAC
TACAtgagaaaaaattgtatatgaAGTTCCACGACTTTTGGAACACTATT
TCTGattaaattcttttgtaattttcagatatcttataaaaccTCTTCAG
AATAAATCTTC
Run BLAST on NCBI

protein sequence of TCONS_00019091-protein

>TCONS_00019091-protein ID=TCONS_00019091-protein|Name=TCONS_00019091-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
QSLTLTTKHGRKDNEVLDGIPKYEIAAQGYIRTQFHPDPLLEDSVHFSFT
TSAGNVHDFEITFDKSENKCYGEGEKDEFDAVLKKLSNEAIFLQGLPYNV
RDEKPRPYEGSFPCNSGFRLNSIKFEYQRGFPVRSLYHITVSWTDGNKQL
HEKKLYMKFHDFWNTISD
Run BLAST on NCBI

transcript from alignment at sc0000319:192354..193168+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019091 ID=TCONS_00019091|Name=TCONS_00019091|organism=Clytia hemisphaerica|type=transcript|length=815bp|location=Sequence derived from alignment at sc0000319:192354..193168+ (Clytia hemisphaerica)
ttcagagCCTCACATTGACAACTAAACATGGCCGTAAAGACAACGAAGTA
CTTGACGGTATCCCAAAATATGAGATTGCGGCTCAAGGTTACATCAGAAC
GCAATTTCATCCTGATCCTCTTCTTGAAGATAGTGTTCATTTTTCGTTTA
CTACAAGTGCTGGAAATGTCCATGATTTTGAGATTACTTTCGATAAATCA
GAAAACAAGTGTTATGGTGAAGGGGTAAGATCTTCAAGACATTTCTCAGG
AAGAAACTGTAACTTTAGCTAAAATAGATTGCACCTCAAAATATCTTAAC
CCTGTTGCAATTCTATTTTAGCATGAAAAGTTTTCAATGGACTTCTCTCA
ATTTAAGAATTTCAAGAATCTCAAGCCTGTACATTCAGTATTTGTCTCGT
AAACCGATTCCCCTTTAAAGTTGTTTAGCTtacttcttttttgacacacc
tAACCAGAATCATTTTCTCTTTGTTAAGGAAAAAGATGAATTTGACGctg
ttttgaagaaattgtCAAACGAGGCGATCTTTTTACAAGGATTACCCTAC
AATGTGCGCGATGAAAAGCCAAGACCATACGAAGGTAGTTTTCCGTGTAA
TAGTGGCTTCCGACTCAACTCTATCAAGTTTGAATACCAGCGTGGTTTTC
CGGTCCGTTCTTTATATCACATTACCGTTAGCTGGACTGATGGTAATAAG
CAACTACAtgagaaaaaattgtatatgaAGTTCCACGACTTTTGGAACAC
TATTTCTGattaaattcttttgtaattttcagatatcttataaaaccTCT
TCAGAATAAATCTTC

Coding sequence (CDS) from alignment at sc0000319:192354..193168+

>TCONS_00019091 ID=TCONS_00019091|Name=TCONS_00019091|organism=Clytia hemisphaerica|type=CDS|length=1014bp|location=Sequence derived from alignment at sc0000319:192354..193168+ (Clytia hemisphaerica)
cagagCCTCACATTGACAACTAAACATGGCCGTAAAGACAACGAAGTACT
TGACGGTATCCCAAAATATGAGATTGCGGCTCAAGGTTACATCAGAACGC
AATTTCATCCTGATCCTCTTCTTGAAGATAGTGTTCATTTTTCGTTTACT
ACAAGTGCTGGAAATGTCCATGATTTTGAGATTACTTTCGATAAATCAGA
AAACAAGTGTTATGGTGAAGGGGAAAAAGATGAATTTGACGctgttttga
agaaattgtCAAACGAGGCGATCTTTTTACAAGGATTACCCTACAATGTG
CGCGATGAAAAGCCAAGACCATACGAAGGTAGTTTTCCGTGTAATAGTGG
CTTCCGACTCAACTCTATCAAGTTTGAATACCAGCGTGGTTTTCCGGTCC
GTTCTTTATATCACATTACCGTTAGCTGGACTGATGGTAATAAGCAACTA
CAtgagaaaaaattgtatatgaAGTTCCACGACTTTTGGAACACTATTTC
TGattaacagagCCTCACATTGACAACTAAACATGGCCGTAAAGACAACG
AAGTACTTGACGGTATCCCAAAATATGAGATTGCGGCTCAAGGTTACATC
AGAACGCAATTTCATCCTGATCCTCTTCTTGAAGATAGTGTTCATTTTTC
GTTTACTACAAGTGCTGGAAATGTCCATGATTTTGAGATTACTTTCGATA
AATCAGAAAACAAGTGTTATGGTGAAGGGGAAAAAGATGAATTTGACGct
gttttgaagaaattgtCAAACGAGGCGATCTTTTTACAAGGATTACCCTA
CAATGTGCGCGATGAAAAGCCAAGACCATACGAAGGTAGTTTTCCGTGTA
ATAGTGGCTTCCGACTCAACTCTATCAAGTTTGAATACCAGCGTGGTTTT
CCGGTCCGTTCTTTATATCACATTACCGTTAGCTGGACTGATGGTAATAA
GCAACTACAtgagaaaaaattgtatatgaAGTTCCACGACTTTTGGAACA
CTATTTCTGattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010706XLOC_010706Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019091-proteinTCONS_00019091-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019091-exon-sc0000319-1491911889:192354..192577TCONS_00019091-exon-sc0000319-1491911889:192354..192577Clytia hemisphaericaexon
TCONS_00019091-exon-sc0000319-1510915933:192354..192577TCONS_00019091-exon-sc0000319-1510915933:192354..192577Clytia hemisphaericaexon
TCONS_00019091-exon-sc0000319-1575043694:192354..192577TCONS_00019091-exon-sc0000319-1575043694:192354..192577Clytia hemisphaericaexon
TCONS_00019091-exon-sc0000319-1491911889:192832..193168TCONS_00019091-exon-sc0000319-1491911889:192832..193168Clytia hemisphaericaexon
TCONS_00019091-exon-sc0000319-1510915933:192832..193168TCONS_00019091-exon-sc0000319-1510915933:192832..193168Clytia hemisphaericaexon
TCONS_00019091-exon-sc0000319-1575043694:192832..193168TCONS_00019091-exon-sc0000319-1575043694:192832..193168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:192354..193168 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.403156	0.687996	0.912948	0.558236	0.13592	0	0.12958	0.242623	0.339732	0.105203	0.102113	0.0671249	0.335158	0.417678	0.171694	0.30709	0	0.232653	0.214282	0.448461	0.0974486	0	2.19569	3.57215	0.649276	0.482886	0.276404	0.147493	0.223736	0.113976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top