|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019086 ID=TCONS_00019086|Name=TCONS_00019086|organism=Clytia hemisphaerica|type=transcript|length=1216bp
CTAcaaacgccgacagaaaactgctgacgaagcatcacaaaacggaaATC
AAAATGGCAGCGTAGTGGTGTAAGATTTTGCCACAAAactgtgatctttt
gacatcgaaattgtggatttggcaaagctggtgagtatggcaaattatga
agtcaatcgaattgccTGTTTGACCACTTTCGCACGTGCTGCTCCGTTTC
ACTTTGAAATGAGGCCAACCTATaatggttagaagtgacgtaacacttga
atgtaaccaatagaatggcctcatttcgtttcggagcaaaACAGAGCTGT
CACGTTCGAACATTTGATCATCACGTTTGAACGCTGCTCCATAAAAGACA
AATGATGTCTTCGAATGAAATTCTTGGCATATGTAACAAACTTCCCACGA
TCAAAAAATTAGTATAAAAGTTCTGCAATTTGGGACAGTTTATCATTCAA
AACTCCAAGAAACAAATACATAAACAATTGACAAAAACTTTCTCATActc
aaaatgaaatttattaCGATTTTTCTTCTGGTTGGAATCTTTTGGAAAGA
TTCTTCAGGACAAGATTGTTATCCAGATATGTTCAATCCAAAAGGTTCTT
CTAGTGTGGAGACAATCTCTGTCAATAATTTGGACaccaataaatttatc
aatattgATGAAGCTTTTCAAATGTTTGGAAGTAGTGTCTATTGCGTCAA
AACATCAATCGTTAGAATCAACACAGCAATCAAGCAATCTAAGCATTTTA
AAATCACTGGGCTGGAGGGGTTTTTGTACGACCACCGATGCTATGCAGAT
GGCTTTGATTATCGCTTCATTGGTTCCAAATCCGGTTTGCTGCGTCTATC
CAACAAATTATCACTTTTGAATCCACATTTCTTCACAATGAAGGAGCGCA
GAAACCCTTTCAGTGATGAATGGAGTATAGCAGCTTTTGGTAAATTCTAT
CCGTGTTCTGATGAACAAAACAATGCATTCAATGCCGATGTAAAAATCGA
TGATTATGGTAATACGGTCATGAAAGTGAGGGATATGAAAACCTTCAATG
CTACATGGCCGCATTATTATCTATCAGATCACGGTGAGCCTCTATCCAGT
ATTCACGTCTTTGATTTGGAGAAATACATGCATTTCACACCAGCCACAGA
AATGCTCGCATTCTTGACTGATTCAAACTATGAAATCATTGTTGAAGATC
AAAGGCTACAATTGAA Run BLAST on NCBI protein sequence of TCONS_00019086-protein >TCONS_00019086-protein ID=TCONS_00019086-protein|Name=TCONS_00019086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MKFITIFLLVGIFWKDSSGQDCYPDMFNPKGSSSVETISVNNLDTNKFIN
IDEAFQMFGSSVYCVKTSIVRINTAIKQSKHFKITGLEGFLYDHRCYADG
FDYRFIGSKSGLLRLSNKLSLLNPHFFTMKERRNPFSDEWSIAAFGKFYP
CSDEQNNAFNADVKIDDYGNTVMKVRDMKTFNATWPHYYLSDHGEPLSSI
HVFDLEKYMHFTPATEMLAFLTDSNYEIIVEDQRLQL Run BLAST on NCBI transcript from alignment at sc0000319:26074..27769+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019086 ID=TCONS_00019086|Name=TCONS_00019086|organism=Clytia hemisphaerica|type=transcript|length=1696bp|location=Sequence derived from alignment at sc0000319:26074..27769+ (Clytia hemisphaerica)
CTAcaaacgccgacagaaaactgctgacgaagcatcacaaaacggaaATC
AAAATGGCAGCGTAGTGGTGTAAGATTTTGCCACAAAactgtgatctttt
gacatcgaaattgtggatttggcaaagctggtgagtatggcaaattatga
agtcaatcgaattgccTGTTTGACCACTTTCGCACGTGCTGCTCCGTTTC
ACTTTGAAATGAGGCCAACCTATaatggttagaagtgacgtaacacttga
atgtaaccaatagaatggcctcatttcgtttcggagcaaaACAGAGCTGT
CACGTTCGAACATTTGATCATCACGTTTGAACGCTGCTCCATAAAAGACA
AATGATGTCTTCGAATGAAATTCTTGGCATATGTAACAAACTTCCCACGA
TCAAAAAATTAGTATAAAAGTTCTGCAATTTGGGACAGTTTATCATTCAA
AACTCCAAGAAACAAATACATAAACAATTGACAAAAACTTTCTCATActc
aaaatgaaatttattaCGATTTTTCTTCTGGTTGGAATCTTTTGGAAAGG
TAAGCCAATAAGATTTATATGAAGAGTTTTAACTTTTATCAATCAATGAT
AATATCATAAATCTGTTAAATTAAAATGCAATGTAGATTATTGGATGGAA
TATGCTGTTTTAAATGAAGTCTTTGAGAATTCTGCGATACACTTTCAgac
ataaatttttttaaatcctgaagctcttTCTTATAACTTTTATCGTGAAC
AAGAGGGAGGATCAGCGACTAAGTGGAACAGTAGTAGGGTTCTTTTTTAA
TCTCATTTTGCGATGCTTCACATAACTCTCAAAGTTGATCAAAATTTCAT
CTTTCAAAAATGAATATATTATGTATATCATTTCTAGATTCTTCAGGACA
AGATTGTTATCCAGATATGTTCAATCCAAAAGGTAAGACATTTTCGCTAG
TTAAAGGTTATGACAATATTATATAGATTCATCGcatgtatctattttct
tttcaagaatatcaaattccACTAACAAGTATTCTTTTTCACCCAATTAA
ATGTCTTAATTCTGTCAATATCAGGTTCTTCTAGTGTGGAGACAATCTCT
GTCAATAATTTGGACaccaataaatttatcaatattgATGAAGCTTTTCA
AATGTTTGGAAGTAGTGTCTATTGCGTCAAAACATCAATCGTTAGAATCA
ACACAGCAATCAAGCAATCTAAGCATTTTAAAATCACTGGGCTGGAGGGG
TTTTTGTACGACCACCGATGCTATGCAGATGGCTTTGATTATCGCTTCAT
TGGTTCCAAATCCGGTTTGCTGCGTCTATCCAACAAATTATCACTTTTGA
ATCCACATTTCTTCACAATGAAGGAGCGCAGAAACCCTTTCAGTGATGAA
TGGAGTATAGCAGCTTTTGGTAAATTCTATCCGTGTTCTGATGAACAAAA
CAATGCATTCAATGCCGATGTAAAAATCGATGATTATGGTAATACGGTCA
TGAAAGTGAGGGATATGAAAACCTTCAATGCTACATGGCCGCATTATTAT
CTATCAGATCACGGTGAGCCTCTATCCAGTATTCACGTCTTTGATTTGGA
GAAATACATGCATTTCACACCAGCCACAGAAATGCTCGCATTCTTGACTG
ATTCAAACTATGAAATCATTGTTGAAGATCAAAGGCTACAATTGAA Coding sequence (CDS) from alignment at sc0000319:26074..27769+ >TCONS_00019086 ID=TCONS_00019086|Name=TCONS_00019086|organism=Clytia hemisphaerica|type=CDS|length=2133bp|location=Sequence derived from alignment at sc0000319:26074..27769+ (Clytia hemisphaerica)
atgaaatttattaCGATTTTTCTTCTGGTTGGAATCTTTTGGAAAGATTC
TTCAGGACAAGATTGTTATCCAGATATGTTCAATCCAAAAGGTTCTTCTA
GTGTGGAGACAATCTCTGTCAATAATTTGGACaccaataaatttatcaat
attgATGAAGCTTTTCAAATGTTTGGAAGTAGTGTCTATTGCGTCAAAAC
ATCAATCGTTAGAATCAACACAGCAATCAAGCAATCTAAGCATTTTAAAA
TCACTGGGCTGGAGGGGTTTTTGTACGACCACCGATGCTATGCAGATGGC
TTTGATTATCGCTTCATTGGTTCCAAATCCGGTTTGCTGCGTCTATCCAA
CAAATTATCACTTTTGAATCCACATTTCTTCACAATGAAGGAGCGCAGAA
ACCCTTTCAGTGATGAATGGAGTATAGCAGCTTTTGGTAAATTCTATCCG
TGTTCTGATGAACAAAACAATGCATTCAATGCCGATGTAAAAATCGATGA
TTATGGTAATACGGTCATGAAAGTGAGGGATATGAAAACCTTCAATGCTA
CATGGCCGCATTATTATCTATCAGATCACGGTGAGCCTCTATCCAGTATT
CACGTCTTTGATTTGGAGAAATACATGCATTTCACACCAGCCACAGAAAT
GCTCGCATTCTTGACTGATTCAAACTATGAAATCATTGTTGAAGATCAAA
GGCTACAATTGatgaaatttattaCGATTTTTCTTCTGGTTGGAATCTTT
TGGAAAGATTCTTCAGGACAAGATTGTTATCCAGATATGTTCAATCCAAA
AGGTTCTTCTAGTGTGGAGACAATCTCTGTCAATAATTTGGACaccaata
aatttatcaatattgATGAAGCTTTTCAAATGTTTGGAAGTAGTGTCTAT
TGCGTCAAAACATCAATCGTTAGAATCAACACAGCAATCAAGCAATCTAA
GCATTTTAAAATCACTGGGCTGGAGGGGTTTTTGTACGACCACCGATGCT
ATGCAGATGGCTTTGATTATCGCTTCATTGGTTCCAAATCCGGTTTGCTG
CGTCTATCCAACAAATTATCACTTTTGAATCCACATTTCTTCACAATGAA
GGAGCGCAGAAACCCTTTCAGTGATGAATGGAGTATAGCAGCTTTTGGTA
AATTCTATCCGTGTTCTGATGAACAAAACAATGCATTCAATGCCGATGTA
AAAATCGATGATTATGGTAATACGGTCATGAAAGTGAGGGATATGAAAAC
CTTCAATGCTACATGGCCGCATTATTATCTATCAGATCACGGTGAGCCTC
TATCCAGTATTCACGTCTTTGATTTGGAGAAATACATGCATTTCACACCA
GCCACAGAAATGCTCGCATTCTTGACTGATTCAAACTATGAAATCATTGT
TGAAGATCAAAGGCTACAATTGatgaaatttattaCGATTTTTCTTCTGG
TTGGAATCTTTTGGAAAGATTCTTCAGGACAAGATTGTTATCCAGATATG
TTCAATCCAAAAGGTTCTTCTAGTGTGGAGACAATCTCTGTCAATAATTT
GGACaccaataaatttatcaatattgATGAAGCTTTTCAAATGTTTGGAA
GTAGTGTCTATTGCGTCAAAACATCAATCGTTAGAATCAACACAGCAATC
AAGCAATCTAAGCATTTTAAAATCACTGGGCTGGAGGGGTTTTTGTACGA
CCACCGATGCTATGCAGATGGCTTTGATTATCGCTTCATTGGTTCCAAAT
CCGGTTTGCTGCGTCTATCCAACAAATTATCACTTTTGAATCCACATTTC
TTCACAATGAAGGAGCGCAGAAACCCTTTCAGTGATGAATGGAGTATAGC
AGCTTTTGGTAAATTCTATCCGTGTTCTGATGAACAAAACAATGCATTCA
ATGCCGATGTAAAAATCGATGATTATGGTAATACGGTCATGAAAGTGAGG
GATATGAAAACCTTCAATGCTACATGGCCGCATTATTATCTATCAGATCA
CGGTGAGCCTCTATCCAGTATTCACGTCTTTGATTTGGAGAAATACATGC
ATTTCACACCAGCCACAGAAATGCTCGCATTCTTGACTGATTCAAACTAT
GAAATCATTGTTGAAGATCAAAGGCTACAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019086-exon-sc0000319-1491911889:26074..26622 | TCONS_00019086-exon-sc0000319-1491911889:26074..26622 | Clytia hemisphaerica | exon |
| TCONS_00019086-exon-sc0000319-1510915933:26074..26622 | TCONS_00019086-exon-sc0000319-1510915933:26074..26622 | Clytia hemisphaerica | exon |
| TCONS_00019086-exon-sc0000319-1575043694:26074..26622 | TCONS_00019086-exon-sc0000319-1575043694:26074..26622 | Clytia hemisphaerica | exon |
| TCONS_00019086-exon-sc0000319-1491911889:26961..27005 | TCONS_00019086-exon-sc0000319-1491911889:26961..27005 | Clytia hemisphaerica | exon |
| TCONS_00019086-exon-sc0000319-1510915933:26961..27005 | TCONS_00019086-exon-sc0000319-1510915933:26961..27005 | Clytia hemisphaerica | exon |
| TCONS_00019086-exon-sc0000319-1575043694:26961..27005 | TCONS_00019086-exon-sc0000319-1575043694:26961..27005 | Clytia hemisphaerica | exon |
| TCONS_00019086-exon-sc0000319-1491911889:27148..27769 | TCONS_00019086-exon-sc0000319-1491911889:27148..27769 | Clytia hemisphaerica | exon |
| TCONS_00019086-exon-sc0000319-1510915933:27148..27769 | TCONS_00019086-exon-sc0000319-1510915933:27148..27769 | Clytia hemisphaerica | exon |
| TCONS_00019086-exon-sc0000319-1575043694:27148..27769 | TCONS_00019086-exon-sc0000319-1575043694:27148..27769 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000319 | supercontig | sc0000319:26074..27769 + |
Blast
The following BLAST results are available for this feature:
|
