TCONS_00019079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019079
Unique NameTCONS_00019079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019079 ID=TCONS_00019079|Name=TCONS_00019079|organism=Clytia hemisphaerica|type=transcript|length=467bp
cttattttaagggggggtAGAAACcatgatttatatagcaaattttcgct
tgggatagaagttaaaggtacgtgcatacaatgtagcaaaactgctccgc
tcataaattcgcttctcGAAAAGTCTCAAGTTCAATGATCAGCAAAATTC
CAGTCTAGTACCTTGTGGGTACTAACTGCTGTAAAGGGTAGTTTACtata
aatttcaagtcaatcaaATGATACTattagggtactaactgctgaaaata
gcattttttaggctatttttgtTTTACTCTCTGGACTaaaaatttttgcc
aagttgTTTGTCAAACAAtacaaaaatgatatttttatttctggGGCTTT
AGACCTAATATTTTTGGGCTTTTTGCTGGTTTTGTAACTTTGTACCATAT
TTTTTGGGCTTCGTATTTAACATAAATCAAATCAGGGGGGGTACATGTTC
AGTGTAGTGACCCATGG
Run BLAST on NCBI

transcript from alignment at sc0000317:306637..307103

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019079 ID=TCONS_00019079|Name=TCONS_00019079|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at sc0000317:306637..307103 (Clytia hemisphaerica)
CCATGGGTCACTACACTGAACATGTACCCCCCCTGATTTGATTTATGTTA
AATACGAAGCCCAAAAAATATGGTACAAAGTTACAAAACCAGCAAAAAGC
CCAAAAATATTAGGTCTAAAGCCccagaaataaaaatatcatttttgtaT
TGTTTGACAAAcaacttggcaaaaatttttAGTCCAGAGAGTAAAacaaa
aatagcctaaaaaatgctattttcagcagttagtaccctaatAGTATCAT
ttgattgacttgaaatttataGTAAACTACCCTTTACAGCAGTTAGTACC
CACAAGGTACTAGACTGGAATTTTGCTGATCATTGAACTTGAGACTTTTC
gagaagcgaatttatgagcggagcagttttgctacattgtatgcacgtac
ctttaacttctatcccaagcgaaaatttgctatataaatcatgGTTTCTa
cccccccttaaaataag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010694XLOC_010694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019079-exon-sc0000317-1491911889:306637..307103TCONS_00019079-exon-sc0000317-1491911889:306637..307103Clytia hemisphaericaexon
TCONS_00019079-exon-sc0000317-1510915933:306637..307103TCONS_00019079-exon-sc0000317-1510915933:306637..307103Clytia hemisphaericaexon
TCONS_00019079-exon-sc0000317-1575043694:306637..307103TCONS_00019079-exon-sc0000317-1575043694:306637..307103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:306637..307103 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.550043	0.804567	0.625766	0.761624	2.03985	3.51691	2.29829	1.50706	1.27465	0.717665	0.557267	0.277088	0.366553	0.386437	0.471219	0.25344	0.207021	0.317418	0.438531	0.153484	0.664765	0.98095	0	0.435967	1.18111	1.71294	0.567724	0	0.154506	0.155502
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top