TCONS_00019039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019039
Unique NameTCONS_00019039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2223

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019039 ID=TCONS_00019039|Name=TCONS_00019039|organism=Clytia hemisphaerica|type=transcript|length=2223bp
gattagttggattgtttgattggttcaaCAAATTTGATTGATCAGGTCTA
GTTGGGAGAGTGTGATGGTCATGAGTCTATTCTATTGGCTGGGCGGTTCC
AGTTATAGTCCGTTACCCCCCCCTACGGATGACATGGATTTCCATTACTg
tacaatttacttttgaaaaatttcaagatttctggAAGAATCTTGGAATT
TTCCGATATACTTAGCAAGAAAATAGAAGTGCatattttatggattttct
gaTATGAATGGTCAAATAATTAGGAAAATCCCGCATTTTCCAGAACCTTT
TTCACAATTTCTCATAatttccaagtgaaaaaaagttcaaaaaaataGTG
CTGTCCACAGGGGATGggtaattgtttttttctagaACTGCCTATTGATT
AACAAACTAACTTACATTGCTTTCCCTCAGCCAGTACAAaggcaggctag
ctctaaagtcCAAATGTGCATTTCCCGTAACTTTTATGGGAACAGTTAGG
GCTATACTGCCTAATTACTCCAGCAtaattttttaatgataatGACATAT
TGATGTGAATTTTACAACACCGCTGGTACAATATAATTTATCCCCTTTTA
GTATAGCTCTAACACTTCATAATGTATAAAATTTAcagcatatttggact
ttgtacccaatgCTGCATGCAAGCACTCAAGCTAAAGTTAAGGATGGTGC
TTGTATATGTGGTGCTTGTATTATGTGGATATGATATTTTCTTGGAAACT
TTCTTATGCAGTCTTGTTCTGTAAAATATTACAAATTAcaaagtttttga
taaaataaaaatttagataAATTTATAGATATTTTCACATTTTATGGGAA
AATGtttgacattttatttttttgcggGGAGGATAACTGTCATTACTATT
TATGGACTAAATAATTGACCATTTTGGGTTTTTTCAAggagtttttgttg
tttttataaagtCTTAGACATTTCTCTTTCAGTTCCTTAGATATACTTAA
AACAGTTGATGCAAACATTTTTACAAGCATTTTCTTGTATTATGCCGTCA
AAACATTCATACAAGctacaaaatatacaaaatcgACTAGAGAAGTTATG
CTGCCCTTTCATTGAAGAGGGAGGTGAACAATGGATGGCTGAGCTTCTTT
TACATCCAAGTGAAACAAGGCTGAAATTGCTTACATGGGCGTTATGCAAT
TTCGATAGTGATTTTGACGAGGTCATTTCCAAATCACTACCTGTAATCAA
TAGTCGGATTGATTCTAGGCAACAGCGTATTTTGTTTGTTCTAAATCTGC
TCAACCTTTGTAAGATTGATGACATTGAGATTGTCAAAGGAACAGCATCA
CATAAAAAGCAGTTAGCATTTTGGGACAACTTGATTGATTTGGTGTATAC
TTCTCAGACTGGACACAATTATTTATCAGATATCCAAACCAAAGAACAAT
CATCTGAAGAAACATCATATTACCTGAAGCCTGCTCAAGCTCCTTCATTG
TTTGAATCTTTCCAGTCTTCATGTACGTTTATGGATACTCTTATtcgtga
aaacaaaacaaaatctctCTTCTCAACAGAAATTCATTTGTTTTCACCTG
ACTTAGAAAGTCGAATcaataatgaaatgaaagtaCAGGAAACACCTAGT
ATTGACCTACTGACTGATACTGCTGTAAAAATATCTGAAGACATTGCAAT
CACTATAAAACAGATTGAAGGCTCTCTAGCTAAGTTTGCACCTTTTGATC
TTGATCAAAACATTGTCGAAAATTATTGTCGCAAAGTTGATCTATCATTG
AAAACGTTCTCGCAAATGATTGATAGCTTTTTGCATTGCCACACACATGA
TATCGAGNTATGGTGTCGTAAGGAACACCCAAATGTTAGTGAATTAGGTC
ATGCTGTCCATTCCACCAATAACATGCTTACAGGACCAACAAAATTGCAT
AAATCGTTGACCCAACTCAATAATACAATGTCAAAATTGTCACAATCTCT
GGTTGGAGACACTCAAGAGTTGCAATCAAAACACTCTGTTGATCTTGCCC
ATCTGACTGACACAGTCAATGTTTTACAAGCCTCTATGAATCGGTTACAa
agataactttttaaatttttatttatcctCTTTTTTGTCAatgtaaatat
ttatttataccTAATCGTTGATTTAAttaaagttgtgttttcaaGTTTTC
CAGATAGGACTAAATAAAAATTG
Run BLAST on NCBI

protein sequence of TCONS_00019039-protein

>TCONS_00019039-protein ID=TCONS_00019039-protein|Name=TCONS_00019039-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MQTFLQAFSCIMPSKHSYKLQNIQNRLEKLCCPFIEEGGEQWMAELLLHP
SETRLKLLTWALCNFDSDFDEVISKSLPVINSRIDSRQQRILFVLNLLNL
CKIDDIEIVKGTASHKKQLAFWDNLIDLVYTSQTGHNYLSDIQTKEQSSE
ETSYYLKPAQAPSLFESFQSSCTFMDTLIRENKTKSLFSTEIHLFSPDLE
SRINNEMKVQETPSIDLLTDTAVKISEDIAITIKQIEGSLAKFAPFDLDQ
NIVENYCRKVDLSLKTFSQMIDSFLHCHTHDIEXWCRKEHPNVSELGHAV
HSTNNMLTGPTKLHKSLTQLNNTMSKLSQSLVGDTQELQSKHSVDLAHLT
DTVNVLQASMNRLQR
Run BLAST on NCBI

transcript from alignment at sc0000317:181500..183795-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019039 ID=TCONS_00019039|Name=TCONS_00019039|organism=Clytia hemisphaerica|type=transcript|length=2296bp|location=Sequence derived from alignment at sc0000317:181500..183795- (Clytia hemisphaerica)
GATTAGTTGGATTGTTTGATTGGTTCAACAAATTTGATTGATCAGGTCTA
GTTGGGAGAGTGTGATGGTCATGAGTCTATTCTATTGGCTGGGCGGTTCC
AGTTATAGTCCGTTACCCCCCCCTACGGATGACATGGATTTCCATTACTG
TACAATTTACTTTTGAAAAATTTCAAGATTTCTGGAAGAATCTTGGAATT
TTCCGATATACTTAGCAAGAAAATAGAAGTGCATATTTTATGGATTTTCT
GATATGAATGGTCAAATAATTAGGAAAATCCCGCATTTTCCAGAACCTTT
TTCACAATTTCTCATAATTTCCAAGTGAAAAAAAGTTCAAAAAAATAGTG
CTGTCCACAGGGGATGGGTAATTGTTTTTTTCTAGAACTGCCTATTGATT
AACAAACTAACTTACATTGCTTTCCCTCAGCCAGTACAAAGGCAGGCTAG
CTCTAAAGTCCAAATGTGCATTTCCCGTAACTTTTATGGGAACAGTTAGG
GCTATACTGCCTAATTACTCCAGCATAATTTTTTAATGATAATGACATAT
TGATGTGAATTTTACAACACCGCTGGTACAATATAATTTATCCCCTTTTA
GTATAGCTCTAACACTTCATAATGTATAAAATTTACAGCATATTTGGACT
TTGTACCCAATGCTGCATGCAAGCACTCAAGCTAAAGTTAAGGATGGTGC
TTGTATATGTGGTGCTTGTATTATGTGGATATGATATTTTCTTGGAAACT
TTCTTATGCAGTCTTGTTCTGTAAAATATTACAAATTACAAAGTTTTTGA
TAAAATAAAAATTTAGATAAATTTATAGATATTTTCACATTTTATGGGAA
AATGTTTGACATTTTATTTTTTTGCGGGGAGGATAACTGTCATTACTATT
TATGGACTAAATAATTGACCATTTTGGGTTTTTTCAAGGAGTTTTTGTTG
TTTTTATAAAGTCTTAGACATTTCTCTTTCAGTTCCTTAGATATACTTAA
AACAGTTGATGCAAACATTTTTACAAGCATTTTCTTGTATTATGCCGTCA
AAACATTCATACAAGCTACAAAATATACAAAATCGACTAGAGAAGTTATG
CTGCCCTTTCATTGAAGAGGGAGGTGAACAATGGATGGCTGAGCTTCTTT
TACATCCAAGTGAAACAAGGCTGAAATTGCTTACATGGGCGTTATGCAAT
TTCGATAGTGATTTTGACGAGGTCATTTCCAAATCACTACCTGTAATCAA
TAGTCGGATTGATTCTAGGCAACAGCGTATTTTGTTTGTTCTAAATCTGC
TCAACCTTTGTAAGATTGATGACATTGAGATTGTCAAAGGAACAGCATCA
CATAAAAAGCAGTTAGCATTTTGGGACAACTTGATTGATTTGGTGTATAC
TTCTCAGACTGGACACAATTATTTATCAGATATCCAAACCAAAGAACAAT
CATCTGAAGAAACATCATATTACCTGAAGCCTGCTCAAGCTCCTTCATTG
TTTGAATCTTTCCAGTCTTCATGTACGTTTATGGATACTCTTATTCGTGA
AAACAAAACAAAATCTCTCTTCTCAACAGAAATTCATTTGTTTTCACCTG
ACTTAGAAAGTCGAATCAATAATGAAATGAAAGTACAGGAAACACCTAGT
ATTGACCTACTGACTGATACTGCTGTAAAAATATCTGAAGACATTGCAAT
CACTATAAAACAGATTGAAGGCTCTCTAGCTAAGTTTGCACCTTTTGATC
TTGATCAAAACATTGTCGAAAATTATTGTCGCAAAGTTGATCTATCATTG
AAAACGTTCTCGCAAATGATTGATAGCTTTTTGCATTGCCACACACATGA
TATCGAGNGTTGATCTATCATTGAAAACGTTCTCGCAAATGATTGATAGC
TTTTTGCATTGCCATACACATGATATTGAAGTATGGTGTCGTAAGGAACA
CCCAAATGTTAGTGAATTAGGTCATGCTGTCCATTCCACCAATAACATGC
TTACAGGACCAACAAAATTGCATAAATCGTTGACCCAACTCAATAATACA
ATGTCAAAATTGTCACAATCTCTGGTTGGAGACACTCAAGAGTTGCAATC
AAAACACTCTGTTGATCTTGCCCATCTGACTGACACAGTCAATGTTTTAC
AAGCCTCTATGAATCGGTTACAAAGATAACTTTTTAAATTTTTATTTATC
CTCTTTTTTGTCAATGTAAATATTTATTTATACCTAATCGTTGATTTAAT
TAAAGTTGTGTTTTCAAGTTTTCCAGATAGGACTAAATAAAAATTG

Coding sequence (CDS) from alignment at sc0000317:181500..183795-

>TCONS_00019039 ID=TCONS_00019039|Name=TCONS_00019039|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000317:181500..183795- (Clytia hemisphaerica)
TATGGTGTCGTAAGGAACACCCAAATGTTAGTGAATTAGGTCATGCTGTC
CATTCCACCAATAACATGCTTACAGGACCAACAAAATTGCATAAATCGTT
GACCCAACTCAATAATACAATGTCAAAATTGTCACAATCTCTGGTTGGAG
ACACTCAAGAGTTGCAATCAAAACACTCTGTTGATCTTGCCCATCTGACT
GACACAGTCAATGTTTTACAAGCCTCTATGAATCGGTTACAAAGATAAAT
GCAAACATTTTTACAAGCATTTTCTTGTATTATGCCGTCAAAACATTCAT
ACAAGCTACAAAATATACAAAATCGACTAGAGAAGTTATGCTGCCCTTTC
ATTGAAGAGGGAGGTGAACAATGGATGGCTGAGCTTCTTTTACATCCAAG
TGAAACAAGGCTGAAATTGCTTACATGGGCGTTATGCAATTTCGATAGTG
ATTTTGACGAGGTCATTTCCAAATCACTACCTGTAATCAATAGTCGGATT
GATTCTAGGCAACAGCGTATTTTGTTTGTTCTAAATCTGCTCAACCTTTG
TAAGATTGATGACATTGAGATTGTCAAAGGAACAGCATCACATAAAAAGC
AGTTAGCATTTTGGGACAACTTGATTGATTTGGTGTATACTTCTCAGACT
GGACACAATTATTTATCAGATATCCAAACCAAAGAACAATCATCTGAAGA
AACATCATATTACCTGAAGCCTGCTCAAGCTCCTTCATTGTTTGAATCTT
TCCAGTCTTCATGTACGTTTATGGATACTCTTATTCGTGAAAACAAAACA
AAATCTCTCTTCTCAACAGAAATTCATTTGTTTTCACCTGACTTAGAAAG
TCGAATCAATAATGAAATGAAAGTACAGGAAACACCTAGTATTGACCTAC
TGACTGATACTGCTGTAAAAATATCTGAAGACATTGCAATCACTATAAAA
CAGATTGAAGGCTCTCTAGCTAAGTTTGCACCTTTTGATCTTGATCAAAA
CATTGTCGAAAATTATTGTCGCAAAGTTGATCTATCATTGAAAACGTTCT
CGCAAATGATTGATAGCTTTTTGCATTGCCACACACATGATATCGAGNTA
TGGTGTCGTAAGGAACACCCAAATGTTAGTGAATTAGGTCATGCTGTCCA
TTCCACCAATAACATGCTTACAGGACCAACAAAATTGCATAAATCGTTGA
CCCAACTCAATAATACAATGTCAAAATTGTCACAATCTCTGGTTGGAGAC
ACTCAAGAGTTGCAATCAAAACACTCTGTTGATCTTGCCCATCTGACTGA
CACAGTCAATGTTTTACAAGCCTCTATGAATCGGTTACAAAGATAAATGC
AAACATTTTTACAAGCATTTTCTTGTATTATGCCGTCAAAACATTCATAC
AAGCTACAAAATATACAAAATCGACTAGAGAAGTTATGCTGCCCTTTCAT
TGAAGAGGGAGGTGAACAATGGATGGCTGAGCTTCTTTTACATCCAAGTG
AAACAAGGCTGAAATTGCTTACATGGGCGTTATGCAATTTCGATAGTGAT
TTTGACGAGGTCATTTCCAAATCACTACCTGTAATCAATAGTCGGATTGA
TTCTAGGCAACAGCGTATTTTGTTTGTTCTAAATCTGCTCAACCTTTGTA
AGATTGATGACATTGAGATTGTCAAAGGAACAGCATCACATAAAAAGCAG
TTAGCATTTTGGGACAACTTGATTGATTTGGTGTATACTTCTCAGACTGG
ACACAATTATTTATCAGATATCCAAACCAAAGAACAATCATCTGAAGAAA
CATCATATTACCTGAAGCCTGCTCAAGCTCCTTCATTGTTTGAATCTTTC
CAGTCTTCATGTACGTTTATGGATACTCTTATTCGTGAAAACAAAACAAA
ATCTCTCTTCTCAACAGAAATTCATTTGTTTTCACCTGACTTAGAAAGTC
GAATCAATAATGAAATGAAAGTACAGGAAACACCTAGTATTGACCTACTG
ACTGATACTGCTGTAAAAATATCTGAAGACATTGCAATCACTATAAAACA
GATTGAAGGCTCTCTAGCTAAGTTTGCACCTTTTGATCTTGATCAAAACA
TTGTCGAAAATTATTGTCGCAAAGTTGATCTATCATTGAAAACGTTCTCG
CAAATGATTGATAGCTTTTTGCATTGCCACACACATGATATCGAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010670XLOC_010670Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019039-proteinTCONS_00019039-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019039-exon-sc0000317-1575043694:181938..183795TCONS_00019039-exon-sc0000317-1575043694:181938..183795Clytia hemisphaericaexon
TCONS_00019039-exon-sc0000317-1575043694:181500..181864TCONS_00019039-exon-sc0000317-1575043694:181500..181864Clytia hemisphaericaexon
TCONS_00019039-exon-sc0000317-1510915933:181938..183795TCONS_00019039-exon-sc0000317-1510915933:181938..183795Clytia hemisphaericaexon
TCONS_00019039-exon-sc0000317-1510915933:181500..181864TCONS_00019039-exon-sc0000317-1510915933:181500..181864Clytia hemisphaericaexon
TCONS_00019039-exon-sc0000317-1491911889:181938..183795TCONS_00019039-exon-sc0000317-1491911889:181938..183795Clytia hemisphaericaexon
TCONS_00019039-exon-sc0000317-1491911889:181500..181864TCONS_00019039-exon-sc0000317-1491911889:181500..181864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:181500..183795 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.47164	1.77792	2.5188	1.52204	0.95701	0.927556	1.47048	1.41299	0.368139	0.912281	0.903894	0	0.63051	0	1.30857	0.966098	1.55117	1.47501	1.03542	0.862186	0.945709	0.369305	4.68586	4.11322	0	0	2.36713	1.79276	2.79592	3.36536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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