TCONS_00019031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019031
Unique NameTCONS_00019031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019031 ID=TCONS_00019031|Name=TCONS_00019031|organism=Clytia hemisphaerica|type=transcript|length=1513bp
tgatttcaaatttgataaTGTAACAATATTATTATGATAATGTCTTATTA
ACAATTTTACCTTTTTAATCTTCGACTTCTTTGGTGCAACATTTAAAATA
GCTGCTTTACGTTTCTTTTCAGCTCCTTtaccaactctacctgctgcaAC
ATGTTTTTTGGGTTTTTCTTTTGGAAGATCTTCAAATTTACATTTGGACG
TGACAAGGCAAATCAACTGTTGGATGTTCTTGAACAAACTCTGACTCTGA
ATCAAAAGATAAAGTTTCTTCCTGTTCTGGAGTTTCATTTTTGCCAACCG
GTGTTGAAGTGGACGTTTTTGAAATCAAGCGTTTTATATCTCCAACAACT
GCCTCATCCAATGTCATGTAAACTGAATCCCGgaagGAATTTGCGTGTCA
ATGTAGTCAACATACCAGAAACTGATTTGTCATTGGCCTGTTTAAGTCCT
TCCCATGCGCACAGAACAAATTGTACGAAGCATTGATGACAAAAGGAGTT
CCGGAGAAAGGTATCTTCCAAAGTTGATGATCGCAGTACGATATAGTCTC
CAGCTAAAGGAAAGGAAACTTTgtgaaagaatatttttgctAAGACCGTG
GATGGACCTTCTAAACATGTTGAAGTTTTAGTAATTGAGCTACATCCTTG
TTATAATCAATCAAATTATAAAGATGATGCGtactaaaaatttaaaacac
aaaacattttcttgaacGATATTTCAATCCTCTCAGACATTTATCAAGTT
TCTTGTTATAATTGAAAAATCGACCCATACTTACTTTGATTTTCGTTGGC
GTCACTAGTAAATCTTGTTGATGAACCTTGTTCATTGCTCTCACTCCTGA
AAATAAAGTGATATAGAATTACTATACATTACCGAATTATTAGATAATCA
CCTTGGGATGATCCAACTTTTAGTATGTGAAGATCACTTCCTCCCTCGAC
TTATTACAGCTCGATTGATTTAGACTAACCACTGTTTTACGATCATACCT
GTCATGGAAGTTATTGTCCGTGTGCTCTggttcaaaagatttttttctaa
aggctaTATTTTTAACACCATCTTCAATGTCTGATTCATCCGATTCCGAA
TCTGTTTCTGAAAATATTGAACATTCTTTCTCTGCATTTGTGTCTTCGAT
TTCAGCGTACACATCCAAGTTAACAAGTTCTTCATCTTCTTCGATCTCCA
CTAAATTTATAGGAGTAGTACGAAAAATTTATTACTTGCGTTTAGACAGC
TAAAACTAAAGGGCCACCACCTACGTCACTACCTTTTCTTGTATTGCGAA
ATGTTTTGCGGATACAATCGGAGAAtggaaacattcgaaaaagtagaATT
TGAAccatttttaattgaaaattttgtaattgttcaaaaaattgtgagta
gTTCGAAAAGGTTCGAGTAAGACATAGCTAGATTATTTACATcgtttttc
aaatttgtatttattAGTTTACTATATTAACTAGTCTAAAAAGATCTTTA
ACCGAAATATGCG
Run BLAST on NCBI

transcript from alignment at sc0000317:96530..105853-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019031 ID=TCONS_00019031|Name=TCONS_00019031|organism=Clytia hemisphaerica|type=transcript|length=9324bp|location=Sequence derived from alignment at sc0000317:96530..105853- (Clytia hemisphaerica)
TGATTTCAAATTTGATAATGTAACAATATTATTATGATAATGTCTTATTA
ACAATTTTACCTTTTTAATCTTCGACTTCTTTGGTGCAACATTTAAAATA
GCTGCTTTACGTTTCTTTTCAGCTCCTTTACCAACTCTACCTGCTGCAAC
ATGTTTTTTGGGTTTTTCTTTTGGAAGATCTTCAAATTTACATTTGGACG
TGACAAGGTTTTTTTCTTCATGAACTAGTCCAGAACTCTTGGGAGCGACT
GATCTCAGCATGTTTCTGATTTCTCTCAGTTTTATTTCCAAATCTTCAGC
AATCTTAAATAAACATATTTAATCTATTTAGGATGATATTTCAAAACCTG
AAATCTGAAGGCTGAGTGTCCACTGAAAANNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNTTTTTTGGTACTTACACTTTCATCAGTAACCAAGTA
TGTCAGTGACTTGATTTCGTTTAAGTGCTCTCTGCATTCTCCAAATTTAG
ATCTTGATATCTTCATTCTTTTAGGCAAATCAACTGTTGGATGTTCTTGA
ACAAACTCTGACTCTGAATCAAAAGATAAAGTTTCTTCCTGTTCTGGAGT
TTCATTTTTGCCAACCGGTGTTGAAGTGGACGTTTTTGAAATCAAGCGTT
TTATATCTCCAACAACTGCCTCATCCAATGTCATGTAAACTGAATCCCGG
TAGGTCTTTGGAAAAGTATCCCATGTCTCCTTTGTGTGTAAAATAATTGC
GAACATGTGCTTACATGGCAATTTTGTTTTTCTCCAAGAAAAGCAATCAC
AATGTGGTTTGCGAAGGTCAACTGAATAGGATACATCATTTTCAAAACTT
TGAATTCTGTAGATGTTTTGTTGCTCCTCAATCCTCGTCTTATTGATATC
CAACACATTTGCTATGAGCAGTTTGTTTCGACAGTGTTGGACAAGATAGC
GTGGTCTGTTATGTAGATATTGGGGAATGTATTTACTATACCCTCGGTGA
AGGGAAGAACATACCAAATTTTTGTCCTTGTACCTTAAACAAAAGTTGAA
ATTAATCAATCATGCAAACATAATTCAACTCAAAGTAGGTTTTAAATTCT
TTGGTATTCCTACAAAGATCTTTCCATTTAGGCAGCTGAAGATTTAAAAA
CTAAGAACTGAACAAGAAATTACTATTCATTTCTCTATGATAGCTGCATT
GACAATGCCTATTTAAATAGTTTATCAACAACTGTTACTTACTCTTTATA
TTTTTCAGGAAGGAATTTGCGTGTCAATGTAGTCAACATACCAGAAACTG
ATTTGTCATTGGCCTGTTTAAGGTATTCATATTTTAAGTCTCTATTTTTT
CGCTCAACCCCGTTGTTGGTATTAATTTCGATTGACAACAAGTCCTTTCT
GTAACAATAAACCCATCTCTGAGAAAAAATTGAAAAATGAATGGATTAGC
TAAGTTAGTTCTTGCAGATAAAATTCTATATCATAACAAATACCACATTC
ACATTGTGCAAGATACAAAAACTAAAAAGTGTATTGATCTTTATATAGAA
TTTTCCATGCTAAATGACCTTAAATTTCAACCTAAGCCAGTTCAAATCTT
CTAAATGAAATTTACTCAATACCTTGCAACAAGGGAACCAGGTAGTCTCT
AACCAGCTTCGAAGCTTTGATGAACCTTCATCATTCCAAATGTCGCTTGA
TTTTAAAATTTCAATCCGAATCTTCATCTCCTCCTCTGTTTCTGAACTCG
CTATCGGCCGAAGCATTTGTAAAACGACATCCCTCTTTGTCAACCCCTTC
CCATCATTCTCATCATCATCTTCCTTGCCATACATTTTCCCAGTCATTCC
ATGCTTCGTTTTGCTCAGCCATCGTTCCCAAGCCTGTTCTCGATGAAAAT
CGCATAGTAAGATGATCGTATCTAAAGAAATTGAAACAAAACTCTTTGCC
AGTTTTAAAATTATTAAATCATTAAGTTTCATAATACCATTATGTTATGC
TCAATTTTTCATACACATGTATACAGGTAACAGGTAAAGTGAATAGAATG
AAAAACAAATAAANATATCTGGATTAAGATTATTTTTTTATGCCTGAATC
CCTTTAACGTTGAATCACTGTTCTCTTTTATTTTATTGTTTACCTTCAAA
ATGAGATATACCAACTTCACTGTTTTCTTTGCTAGTAAGGCATTCTATAA
AAGCAAATACAGAAAATCTCATGAGTGTGACTGTAAAATAAAGGCTGTTT
AAGGGGAAATATTTAAATGATTTTCAGATGATGAAATTCGTTTTACGTAT
ATACCACAAATGCAGTTTTATATCTTTATTGAGGTATTACTCCTATTTCA
GGGCAGGGTACCCTCAACTGTTAAAATTTGATTTAGGAATAATTCCTTAC
CATTTGCTTTTTTTGGCTTGGCATCAGATATAAAGAGTGTTTGTTCATTT
TGATTTGTAAGTGGAACATCATAGGTGCATGGTATTGTTAAATCGATTAG
TTCTGTTTCAACCTTGATTAAGAAGAAAAGCAAAAATTTGAAATGTTTCT
GTTTTTCCTTGTTCAAGTTGTAATTAAGCCTACACCACATCGGGTAAAAG
TTTTCAGGTTTTATGTAGATATTTATGAAATGTACAAGGGCTGCTGTTGA
TTTCAAATTTGATAATGTAACAATATTATTATGATAATGTCTTATTAACA
ATTTTACCTTTTTAATCTTCGACTTCTTTGGTGCAACATTTAAAATAGCT
GCTTTACGTTTCTTTTCAGCTCCTTTACCAACTCTACCTGCTGCAACATG
TTTTTTGGGTTTTTCTTTTGGAAGATCTTCAAATTTACATTTGGACGTGA
CAAGGTTTTTTTCTTCATGAACTAGTCCAGAACTCTTGGGAGCGACTGAT
CTCAGCATGTTTCTGATTTCTCTCAGTTTTATTTCCAAATCTTCAGCAAT
CTTAAATAAACATATTTAATCTATTTAGGATGATATTTCAAAACCTGAAA
TCTGAAGGCTGAGTGTCCACTGAAAANNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTATACTTGTGATTTT
ACTTCTAACGCGTGAATGTAAAACTTAGAATTGTGAATATTACCTGGAAA
AAGGGCTTGCAAAGCATCTATTTCCTCTTGACAATAATCCACCATCATAA
CTTTGGGGTTCCATTCTGGATTCCATTCTTTTAATTTGGCAAGTCCTTCG
AGGATTGATTCTGTCGTCTCATCTTGGATAGCAAATGAGCCTATCACTTG
ATAGTCCACATTTGTTTTTGTGGCAACAAAGAACAACGGTAGCCTATATT
TTGTGGTTTTGTGGGTGGCGTCTAATAGGCCGATCTCGTTCCCGTACCGC
TTCATTAACCGTTTTTCGTTTGGATTTTGGTGGACAAATAGCAATCTTTG
TTCTTTCTGATTTGTAAGCACATCAATTAGCTCGGCATTTTCGTTATAAA
TTTTAGCACCCTCTCCTTCCCCGTAGCTTCTAAAAAAAATCTTTTCGTTT
GGGTTTTCAGCTCGCCATTTCTTTATGAGTTCGATGACATTGGCTTGGTC
ATTTTTTGAGAACCTGTTTTTCATTTTCACTTTATTTATGTGGGCCCTTA
TGTCACTTTTTTTGGGGTAGAAGCGTCTGTTATTCTCATTCGGTAGTTCC
TTGCCCTTGAACAGATCATTCTTTACATAGAGCTCGAGGAGCGTTTTTAC
TTGAGCAGGTCTTCGAATACCATCCTTTGCTAATGATTCGATCTGTTTGA
TGATATCCGGATCGAGACGCTGCGAAAGGCCTCCAAGCTAAAATAAAACA
AAAGAAAGAAGGCATGTTTTTTATTGTCAATATTCAATCCGATTTCCTTT
TAAAATGAGGCGCATTATATATTCTTTGTCGTCGCAATGTACGTTGAATG
GAACATATTATACCTCTCCAACATAATGACCAACGTGTTTATTTTCGTGT
GATATTTCGGTTACAAACAACCTTTCTAGCTCTGGACATTCTCCTTCTTC
AAGCAAACCTCTCAACGTCTTTGATACTTGCTTTTTCTTGTGATCTGATG
CTTCAAGATCGACCTAAAATAGTATTATATGAATTTAATAATTAAAAGTT
TTGGGTACGGAATTAATAATCGATATCATCATTTTTCACTCAGACAATAA
TGAACTAGACGAGATTCATTGTGATATACCTTGTATTCTGGAAAGTATAT
AATATCTTTTATTGTCAGCCGAGCCGGACAACCAGTCTTCATTGTATCTT
GGATGTAATTTCTAGATTTCTTCATGGTAGGATGTTCTTGGTTGGCCTGA
AATTAGGATTGACTTGTCATTTTTTCAGTGAATGATATTGTAGTGTTGTA
TTTTGCTACAACAAATGCTTCTACGTAACAATTAGTAAAAGGGATAATCA
CCCCTTTAAATTATCTATTTCTGTCATTTTTGTCATGTTCTTACCTCTTC
TATTTTTTTTTGCTTTCTTTTCTCTTTATGTGATTTGTTGAAGTCCTTCC
CATGCGCACAGAACAAATTGTACGAAGCATTGATGACAAAAGGAGTTCCG
GAGAAAGGTACGATTTCGTTTTTAGAGGATCCTTTCATGGACCAGTACAC
TTTATGTTTCTTCTTTAAATCGATTTCATCTTCAAAAAAAGATAACCTTT
AGTTAACTATCAAGAATACAAACGTTTTTATTTTCACAAGAAAAGCTTCT
ATCCAGTAAACAGCCCCTCTGGTCTTTTTTTCCTACAGGTTTGCTTAGCT
CCCTATCTGGCGCAAAAGATCTCATAATATATCAAACTTTTTATTCTATA
TGCGTGATAAATAGTAAAGTAGATACCTCCTCCAAAGCCTTTTGTTTTTT
CATATTTTGAATATTTAAAGCCAGAATTTATTTCATATGATTTTATCTCT
TTGTAGGTATCTTCCAAAGTTGATGATCGCAGTACGATATCGTCTCCAGC
TAAACAAGGAAACTTTGTGAAAGAATATTTTTGCTAAGACCGTGGATGGA
CCTTCTAAACATGTTGAAGTTTTAGTAATTTAGCTACATCCTTGTTATAA
TCAATCAAATTATAAAGATGATGCGTACTAAAAATTTAAAACACAAAACA
TTTTCTTGAACGATATTTCAATCNGTTTGCTACAACAAATGCTTCTACGT
AACAATTAGTAAAAGGGATAATCACCCCTTTAAATTATCTATTTTTGTCA
TGTTCTTACCTCTTCTATTTTTTTTTGCTTTCTTTTCTCTTTATGTGATT
TGTTGAAGTCCTTCCCATGCGCACAGAACAAATTGTACGAAGCATTGATG
ACAAAAGGAGTTCCGGAGAAAGGTACGATTTCGTTTTTAGAGGATCCTTT
CATGGACCAGTACACTTTATGTTTCTTCTTTAAATCGATTTCATCTTCAA
AAAAAGATAACCTTTAGTTAACTATCAAGAATACAAACGTTTTTATTTTC
ACAAGAAAAGCTTCTATCCAGTAAACAGCCCCTCTGGTCTTTTTTTCCTA
CAGGTTTGCTTAGCTCCCTATCTGGCGCAAAAGATCTCATAATATATCAA
ACTTTTTATTCTATATGCGTGATAAATAGTAAAGTAGATACCTCCTCCAA
AGCCTTTTGTTTTTTCATATTTTGAATATTTAAAGCCAGAATTTATTTCA
TATGATTTTATCTCTTTGTAGGTATCTTCCAAAGTTGATGATCGCAGTAC
GATATAGTCTCCAGCTAAAGGAAAGGAAACTTTGTGAAAGAATATTTTTG
CTAAGACCGTGGATGGACCTTCTAAACATGTTGAAGTTTTAGTAATTGAG
CTACATCCTTGTTATAATCAATCAAATTATAAAGATGATGCGTACTAAAA
ATTTAAAACACAAAACATTTTCTTGAACGATATTTCAATCCTCTCAGACA
TTTATCAAGTTTCTTGTTATAATTGAAAAATCGACCCATACTTACTTTGA
TTTTCGTTGGCGTCACTAGTAAATCTTGTTGATGAACCTTGTTCATTGCT
CTCACTCCTGAAAATAAAGTGATATAGAATTACTATACATTACCGAATTA
TTAGATAATCACCTTGGGATGATCCAACTTTTAGTATGTGAAGATCACTT
CCTCCCTCGACTTATTACAGCTCGATTGATTTAGACTAACCACTGTTTTA
CGATCATACCTGTCATGGAAGTTATTGTCCGTGTGCTCTGGTTCAAAAGA
TTTTTTTCTAAAGGCTATATTTTTAACACCATCTTCAATGTCTGATTCAT
CCGATTCCGAATCTGTTTCTGAAAATATTGAACATTCTTTCTCTGCATTT
GTGTCTTCGATTTCAGCGTACACATCCAAGTTAACAAGTTCTTCATCTTC
TTCGATCTCCACTAAATTTATAGGAGTAGTACGAAAAATTTATTACTTGC
GTTTAGACAGCTAAAACTAAAGGGCCACCACCTACGTCACTACCTTTTCT
TGTATTGCGAAATGTTTTGCGGATACAATCGGAGAATGGAAACATTCGAA
AAAGTAGAATTTGAACCATTTTTAATTGAAAATTTTGTAATTGTTCAAAA
AATTGTGAGTAGTTCGAAAAGGTTCGAGTAAGACATAGCTAGATTATTTA
CATCGTTTTTCAAATTTGTATTTATTAGTTTACTATATTAACTAGTCTAA
AAAGATCTTTAACCGAAATATGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010667XLOC_010667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019031-exon-sc0000317-1575043694:105647..105853TCONS_00019031-exon-sc0000317-1575043694:105647..105853Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1575043694:104105..104279TCONS_00019031-exon-sc0000317-1575043694:104105..104279Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1575043694:103482..103545TCONS_00019031-exon-sc0000317-1575043694:103482..103545Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1575043694:98647..98710TCONS_00019031-exon-sc0000317-1575043694:98647..98710Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1575043694:96530..97532TCONS_00019031-exon-sc0000317-1575043694:96530..97532Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1510915933:105647..105853TCONS_00019031-exon-sc0000317-1510915933:105647..105853Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1510915933:104105..104279TCONS_00019031-exon-sc0000317-1510915933:104105..104279Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1510915933:103482..103545TCONS_00019031-exon-sc0000317-1510915933:103482..103545Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1510915933:98647..98710TCONS_00019031-exon-sc0000317-1510915933:98647..98710Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1510915933:96530..97532TCONS_00019031-exon-sc0000317-1510915933:96530..97532Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1491911889:105647..105853TCONS_00019031-exon-sc0000317-1491911889:105647..105853Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1491911889:104105..104279TCONS_00019031-exon-sc0000317-1491911889:104105..104279Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1491911889:103482..103545TCONS_00019031-exon-sc0000317-1491911889:103482..103545Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1491911889:98647..98710TCONS_00019031-exon-sc0000317-1491911889:98647..98710Clytia hemisphaericaexon
TCONS_00019031-exon-sc0000317-1491911889:96530..97532TCONS_00019031-exon-sc0000317-1491911889:96530..97532Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:96530..105853 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	3.3692e-10	0	0	0.191973	0.00812074	0	0.122836	0	0	0	0	0	0	0	0	0	0	1.14124e-08	1.471e-05	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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