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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019028 ID=TCONS_00019028|Name=TCONS_00019028|organism=Clytia hemisphaerica|type=transcript|length=2323bpRun BLAST on NCBI protein sequence of TCONS_00019028-protein >TCONS_00019028-protein ID=TCONS_00019028-protein|Name=TCONS_00019028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=511bp MVFQQRRWIVFLLVILGLISLCHGKRELSPSLSMVYGPGLNLEVVLPVRYRun BLAST on NCBI transcript from alignment at sc0000317:64110..92757- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019028 ID=TCONS_00019028|Name=TCONS_00019028|organism=Clytia hemisphaerica|type=transcript|length=28648bp|location=Sequence derived from alignment at sc0000317:64110..92757- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000317:64110..92757- >TCONS_00019028 ID=TCONS_00019028|Name=TCONS_00019028|organism=Clytia hemisphaerica|type=CDS|length=15360bp|location=Sequence derived from alignment at sc0000317:64110..92757- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019028 vs. Swiss-Prot (Human)
Match: KDEL1 (KDEL motif-containing protein 1 OS=Homo sapiens GN=KDELC1 PE=1 SV=1) HSP 1 Score: 565.459 bits (1456), Expect = 0.000e+0 Identity = 271/486 (55.76%), Postives = 343/486 (70.58%), Query Frame = 2
Query: 407 FLLVILGLISLCHGKRELSPSLSMVYGPGLNLEVVLPVRYFYVQAVDTKGKNYTRSIGNKALTVKIQADRQ--PRVWKDVLDRNDGSYIVRMRFYETYKNVEISVMYNGKHVAKSPYKLKGLLYHERCDCPENDEQRWLSEMKCPQSYAQISRDLSPFPQIDLTKMKEDAIREFGTHHALCHYSVVHNKVYRKCYGQHVGFSIFMDAWLFSLIRKVKLPDLEFFSNLGDWPLSERKKPPI--PILSWCGSDETFDIVMPTYDLTESALEALGRVSLDMLSVQGNTGPKWKGKIEKGFFRGRDSRQERLDLTVMGREKTGLFDVGMTNFFFFEYDEKKYGPKNQHVSFFDFFKYKYQLNIDGTVAAYRFPYLLAGDSVVFKQDSHYYEHFYHDLQSMVHYIPFKRDLSDLEEKIKWAKSHDKEARKIAMAGQTYARDHLMTDQLFCYSFTLFKELSSRYVQRPKVHVEQEHIEMPGEQE-GKCQCDR 1849
F L + ++ G+R+LSP S ++GPGL +VVLP RYFY+QAVDT G +T S G K VK+ A + RV VLDR DGS+IVR R Y +YKN+++ + + G+HVAKSPY LKG +YHE CDCP D WL EM CP++ AQI RDL+ FP +D K+ + + FG +LCHY++ NKVY K +G+HVGF IFMDA L SL RKVK+PD+E F NLGDWPL ++K PI SWCGS ++ DIVMPTYDLT+S LE +GRVSLDM+SVQ NTGP W+ K +RGRDSR+ERL+L + R+ L D TNFFFF++DE YGP +H+SFFDFFK+KYQ+NIDGTVAAYR PYLL GDSVV KQDS YYEHFY++LQ HYIP K +LSDL EK+KWAK HD+EA+KIA AGQ +AR++LM D +FCY F LF+E ++ V P++ + +E E + C C R
Sbjct: 10 FFLATVPALAETGGERQLSPEKSEIWGPGLKADVVLPARYFYIQAVDTSGNKFTSSPGEKVFQVKVSAPEEQFTRVGVQVLDRKDGSFIVRYRMYASYKNLKVEIKFQGQHVAKSPYILKGPVYHENCDCPLQDSAAWLREMNCPETIAQIQRDLAHFPAVDPEKIAVEIPKRFGQRQSLCHYTLKDNKVYIKTHGEHVGFRIFMDAILLSLTRKVKMPDVELFVNLGDWPLEKKKSNSNIHPIFSWCGSTDSKDIVMPTYDLTDSVLETMGRVSLDMMSVQANTGPPWESKNSTAVWRGRDSRKERLELVKLSRKHPELIDAAFTNFFFFKHDENLYGPIVKHISFFDFFKHKYQINIDGTVAAYRLPYLLVGDSVVLKQDSIYYEHFYNELQPWKHYIPVKSNLSDLLEKLKWAKDHDEEAKKIAKAGQEFARNNLMGDDIFCYYFKLFQEYANLQVSEPQIREGMKRVEPQTEDDLFPCTCHR 495 The following BLAST results are available for this feature:
BLAST of TCONS_00019028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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