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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019017 ID=TCONS_00019017|Name=TCONS_00019017|organism=Clytia hemisphaerica|type=transcript|length=1273bp
aaagtttttgcatCTCATCTGTGGAAACTATGATGCATACAAACAAAGTG
AAAGGATTTATTGCACAAAAGAAGGTCAAGATtgtttcttTGGTGCCATC
ATCAAGTGCGAAGAAGCCAAAGTTATAATGTCACCCACCCAAAGCAACAA
ACACGAAAAAGACTGCTCTACCAAGCTCAAATAAATTTACCCTTCCACGA
CCCGAAGCATAACAgaagaaatctttatttattCTTCAAATTTCTACTGC
TACAACTAAGCAACGAGATTCAATTTCTGCTCTTCATNAATTTCAACTGC
TACAACTAAGCAACGAGATTCAATTTCTGCTCTTCATCATCAACTATATA
TTGTACGTACAAATCAGCCTGCTAAAGAACCTGATGTCACACAACCGCTG
AACTTCAAACCGttctcaaaaattatataaagctcTATCTTCTGGACAAC
CACTTCAGCTTTAAGTTCTCAATCCTTtactgaaaaattttaattgaatg
GTCATCCTTCAACTTCTTCGACATAACATTATAACGTTCCAGAAAGTTTG
GTTTGATTCTAAAGAGACATCTCCCTTCCTAAAAAGGATATATTGATACc
ttggaatagaccttttttcaaagaggacgtcctgttgaataattatgtag
tccagtcataaaaacaatgatagagtcatgcataattactgtatcatgca
tattgtaataattatgcatggttttatcattatttttctgctggactaca
taattattcaacagggtggcctctttgaaaaaaggtctatgcaaAGAAGT
AGAAGAAGGAACACCTGCCATATATGAAACACGATATTGGGTTTGCACAC
TTTTTTATTAgagtgtttttattgaataaagCTAATGGTGAAGCATtcat
atatatataaatttagCTAAATAAGGATGACATACTGTACACTATGCTCT
tacagattatttttttgtttataaataaagcaGTAATTTCTGATTGGTAC
CTATGTAAACTAGGAATGACAttatgaaattatatatttttattgcaatg
ttaagaattcattgaaatgataagtccatagacatattttttgtttataa
aaatgttgaataaaaatagtaaaagtaaTATAGAGAAAACTCTGACTATG
CTTgtctagttttaattttttgtgaaaacagTTGTATTGGGAAAAACTTA
GATTAAGATTGAAAGTAAGGGGGTTTTATAGACCAAACCACCAACAAGAA
Agctggaaaagaaagaaagaaaa Run BLAST on NCBI transcript from alignment at sc0000317:52003..53624+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019017 ID=TCONS_00019017|Name=TCONS_00019017|organism=Clytia hemisphaerica|type=transcript|length=1622bp|location=Sequence derived from alignment at sc0000317:52003..53624+ (Clytia hemisphaerica)
aaagtttttgcatCTCATCTGTGGAAACTATGATGCATACAAACAAAGTG
AAAGGATTTATTGCACAAAAGAAGGTCAAGATGTAAGTGTAATAATATAA
TCTTTgctgaattttttatcaaaNAACTAACAGAAGAAAGTTTTTGCATC
TCATCTGTGGAAACTATGATGCATACAAACAAAGTGAAAGGATTTATTGC
ACAAAAGAAGGTCAAGATGTAAGTGTAATAATATAATCTTTgctgaattt
tttatcaaacctaTAAACTAAAACAATAACAGAAGTTTCTTTCTGGTTCT
TTAGTGTTTagtttttcttctcttctttaTCTTGCAGTCTTGCTTTTTAT
ATGCTCTCAAATTACAAATACATCCAAAGTAACCATTGCAATGAACAGCA
TgtaaccatatttctttttcatgtttttcagtgtttcttTGGTGCCATCA
TCAAGTGCGAAGAAGCCAAAGTTATAATGTCACCCACCCAAAGCAACAAA
CACGAAAAAGACTGCTCTACCAAGCTCAAATAAATTTACCCTTCCACGAC
CCGAAGCATAACAgaagaaatctttatttattCTTCAAATTTCTACTGCT
ACAACTAAGCAACGAGATTCAATTTCTGCTCTTCATNAATTTCAACTGCT
ACAACTAAGCAACGAGATTCAATTTCTGCTCTTCATCATCAACTATATAT
TGTACGTACAAATCAGCCTGCTAAAGAACCTGATGTCACACAACCGCTGA
ACTTCAAACCGttctcaaaaattatataaagctcTATCTTCTGGACAACC
ACTTCAGCTTTAAGTTCTCAATCCTTtactgaaaaattttaattgaatgG
TCATCCTTCAACTTCTTCGACATAACATTATAACGTTCCAGAAAGTTTGG
TTTGATTCTAAAGAGACATCTCCCTTCCTAAAAAGGATATATTGATACct
tggaatagaccttttttcaaagaggacgtcctgttgaataattatgtagt
ccagtcataaaaacaatgatagagtcatgcataattactgtatcatgcat
attgtaataattatgcatggttttatcattatttttctgctggactacat
aattattcaacagggtggcctctttgaaaaaaggtctatgcaaAGAAGTA
GAAGAAGGAACACCTGCCATATATGAAACACGATATTGGGTTTGCACACT
TTTTTATTAgagtgtttttattgaataaagCTAATGGTGAAGCATtcata
tatatataaatttagCTAAATAAGGATGACATACTGTACACTATGCTCTt
acagattatttttttgtttataaataaagcaGTAATTTCTGATTGGTACC
TATGTAAACTAGGAATGACAttatgaaattatatatttttattgcaatgt
taagaattcattgaaatgataagtccatagacatattttttgtttataaa
aatgttgaataaaaatagtaaaagtaaTATAGAGAAAACTCTGACTATGC
TTgtctagttttaattttttgtgaaaacagTTGTATTGGGAAAAACTTAG
ATTAAGATTGAAAGTAAGGGGGTTTTATAGACCAAACCACCAACAAGAAA
gctggaaaagaaagaaagaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019017-exon-sc0000317-1491911889:52003..52084 | TCONS_00019017-exon-sc0000317-1491911889:52003..52084 | Clytia hemisphaerica | exon |
| TCONS_00019017-exon-sc0000317-1510915933:52003..52084 | TCONS_00019017-exon-sc0000317-1510915933:52003..52084 | Clytia hemisphaerica | exon |
| TCONS_00019017-exon-sc0000317-1575043694:52003..52084 | TCONS_00019017-exon-sc0000317-1575043694:52003..52084 | Clytia hemisphaerica | exon |
| TCONS_00019017-exon-sc0000317-1491911889:52434..53624 | TCONS_00019017-exon-sc0000317-1491911889:52434..53624 | Clytia hemisphaerica | exon |
| TCONS_00019017-exon-sc0000317-1510915933:52434..53624 | TCONS_00019017-exon-sc0000317-1510915933:52434..53624 | Clytia hemisphaerica | exon |
| TCONS_00019017-exon-sc0000317-1575043694:52434..53624 | TCONS_00019017-exon-sc0000317-1575043694:52434..53624 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000317 | supercontig | sc0000317:52003..53624 + |
Blast
The following BLAST results are available for this feature:
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