TCONS_00018984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018984
Unique NameTCONS_00018984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2701

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018984 ID=TCONS_00018984|Name=TCONS_00018984|organism=Clytia hemisphaerica|type=transcript|length=2701bp
CGAACTTTGATATATCACTTTTACTTAAAGTTTCGTCTTTTTATGACAAT
ATTTTTTACAAGTTACAAGATTATATAGGTTTTTATgttaaaatacattt
taaaataaataagatATCTTCATACATCACTTTTTTACCATATTTCTAAT
TTATGCTAAAATACTTTATTTAGATATTTTCCACCAGTAGTTCGTTTCAG
TTTATTGCTGACCCGTTTGTTTATAAATGTTACGGAATAAattacattgt
ttttttttttacaatagtGCCGATTTTTTGGGTGACACATCAGGTCTCCA
CCCCTTAACGACgaaattcaaaagtttctttGATTCCAAATTTGAGATTT
TCACTTTATGATCATTTTTAAGTGAATTTAATGTTTCTTTGTCTAAGATA
TCCAATAATAAATCTCCATTGACTTGATTCTTGATACAGAAGTTACCGAA
ATCAATTAAGTTAATAGTGGTCATGTGTAAGAGAACGTCATTTTCCGACC
AGTCTCTTGGGTTTAGACTATTCCTTCGGGAAGCCTCAGTAATTTGTCTG
TCCTCAGATTGCGGGCGCCAACCTTTTATATATTTCACAATTTTCTTGGC
TTGGAATAACGATAATTTAAGGTCATTGACCAAATCGTCAATTTCAAGGT
CTAATAAAAGTTCACCGTTAATTTGATTTTGTGTGAATATATCTTTGAAG
TCGTAAAAGTTCAATGTCTCTAATACGCGACAGACGCCATCTTCGTTTAA
TTGTCGTATTTCGTTAATACTCTCTAACTGTCTTGAAGTTAAAGGTGATA
AATCTTGATTTGTTGTCTTATTGTTCTCTACTTCGTTAGACTTATCTTTT
TCAGTGTTATGAAAATTCATCATGTTGATTGTATTTTGGTTAGTTAAAAA
GTCTGTTTGATAGTCATCGGTTGCCGGTTGGTTTTCTTGTTCTGTGCTAA
TCAGATTTGAGTCAACACCCCATAAGTAACTAGAGCTTGATCCACCTTGa
gaagaataagtttttcttccCGATGACGGCGAATCCTTCAAATTCATCGG
TAAACTCCATTCAGAAAACGTATCAATCGTGTCACTTGGATTGCTTGACG
GTGCATCGGGCGACATTCGGGATCTGGATCTAGATAAAGATCGGGAGCGT
GGATGTTTACGTCCTGATAGACAAATCCCCGAGTCACCACTTCCCTTGCG
ACTGTGTCTTCGTCGGCGACCAGGAGTCATTGTTTGGTCAATCGACATCG
TCATGGCTTCCATACATTCGGTGATTCGGGAGAAAGACTCGTTCCCAATA
CTGTCACTCCCGTTTGAGGTCGGTGCGATCGATAGGAGATCGGTAGTCGA
ATGACCATCGTCACTCTGAATGAACGAGCGAGTTTCATCTAATTCGTCTT
GACTTTTCTGTTTGTTTCGTCCATTCTTATCTTTCCCAATTTTACTCGAC
ATTGATTTTCTAAGtcctttaaatttgaaaaagttctcAAAATTCTTTCC
AAGATCTAAGCTCTTGTTACGATTTTTAACAATTGTCGAGGTTGATTGTG
TCTTTTTGGGTAGCTCTGGTACTGATGTGGTTGAACTATATCTTGAAGAA
GCATCTGTGGAGCTTCTTGTTCGGTTGTACATTCTAGGTGTAGATCCGCG
CCTGGGAATCATTGGAGTATGCAAATCATCAAAAGTCTGTAAAGTGACTC
CTGAATAAGGATCTGATGGGCTACAATaatcaaatttctttaaatcaaCT
TGTGATTGACTGTTCGGGTAACGATAAGGACTCTTCTTAATTCCAGTAGC
AACTTGAATAGTGACTGGTAGCTCAGCTGAGAATGTCAATGCATGTCTCA
CATTGTCAATGATTGTTGTGGCCAGTATAGAGTTCATAGCTCGTTTACGT
TCAAGGGTTAAAAGTCCCAAATGTGGCCCATAAGATGAGTTTTTCTCTGT
ATTACTCAAAAATTGTACATTGATTGGtaatttaaattctttaatcaaaT
CTGCAACAATGTAACGCTTATGAAGTTGCTGGTATGAAAATGTCTCTGTG
AAGCTTCCCACAAAATGCATCGGGAGAGTGATCGTGCGACCGTCGTTATC
GTTTTGATCGTCGACTCGACAATTCAGTCCCGCGATATCACCATCGCCAG
TCATAACTTTATCTTTAAGCTCTAATATTGTGTCTGCTGTCAATTCAATA
TCGTCACAACCTAAAGCGTCTTGTTGCAGTGTCACGAAACTTGGTGGTGA
TTCACAGTAACAAAGTTCACGAATGTCTTTAAAAGTACGGGGTGATGTCA
TGGCGATAACACGTAACTTAAATGGACACGATAGCGGAATATTCAATTCG
CGACCATAAATATCCTGACCTGTGACATTCTCAATCTTCTTTTTCCCGTG
AATGGTGAGAATTTGTCCGCTAGCTAGCGCATCATCTTCATCGATCATGT
GACCTTGATGAATACGAACTACTTGAGGTAACTCGAAGTTTGGATTGTCT
AAAATGAATTTGAGTTTGTACTCTGTGTTTTTCCATACTAAGTCGTCTGG
ATTCATACTGAGTTCCATAGGAGGGCTACTCGTTGATGATATGATACTCA
TTGCGCATGCGTCGATTTTTGTTGTCCTTGTTGTTGTTTCTATGTTCTTT
TATTGTGCTGAAACGAAATAAGGAATACCATTAAATTTCTGATTACCAAG
C
Run BLAST on NCBI

transcript from alignment at sc0000314:58817..61576-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018984 ID=TCONS_00018984|Name=TCONS_00018984|organism=Clytia hemisphaerica|type=transcript|length=2760bp|location=Sequence derived from alignment at sc0000314:58817..61576- (Clytia hemisphaerica)
CGAACTTTGATATATCACTTTTACTTAAAGTTTCGTCTTTTTATGACAAT
ATTTTTTACAAGTTACAAGATTATATAGGTTTTTATGTTAAAATACATTT
TAAAATAAATAAGATATCTTCATACATCACTTTTTTACCATATTTCTAAT
TTATGCTAAAATACTTTATTTAGATATTTTCCACCAGTAGTTCGTTTCAG
TTTATTGCTGACCCGTTTGTTTATAAATGTTACGGAATAAATTACATTGT
TTTTTTTTTTACAATAGTGCCGATTTTTTGGGTGACACATCAGGTCTCCA
CCCCTTAACGACGAAATTCAAAAGTTTCTTTGATTCCAAATTTGAGATTT
TCACTTTATGATCATTTTTAAGTGAATTTAATGTTTCTTTGTCTAAGATA
TCCAATAATAAATCTCCATTGACTTGATTCTTGATACAGAAGTTACCGAA
ATCAATTAAGTTAATAGTGGTCATGTGTAAGAGAACGTCATTTTCCGACC
AGTCTCTTGGGTTTAGACTATTCCTTCGGGAAGCCTCAGTAATTTGTCTG
TCCTCAGATTGCGGGCGCCAACCTTTTATATATTTCACAATTTTCTTGGC
TTGGAATAACGATAATTTAAGGTCATTGACCAAATCGTCAATTTCAAGGT
CTAATAAAAGTTCACCGTTAATTTGATTTTGTGTGAATATATCTTTGAAG
TCGTAAAAGTTCAATGTCTCTAATACGCGACAGACGCCATCTTCGTTTAA
TTGTCGTATTTCGTTAATACTCTCTAACTGTCTTGAAGTTAAAGGTGATA
AATCTTGATTTGTTGTCTTATTGTTCTCTACTTCGTTAGACTTATCTTTT
TCAGTGTTATGAAAATTCATCATGTTGATTGTATTTTGGTTAGTTAAAAA
GTCTGTTTGATAGTCATCGGTTGCCGGTTGGTTTTCTTGTTCTGTGCTAA
TCAGATTTGAGTCAACACCCCATAAGTAACTAGAGCTTGATCCACCTTGA
GAAGAATAAGTTTTTCTTCCCGATGACGGCGAATCCTTCAAATTCATCGG
TAAACTCCATTCAGAAAACGTATCAATCGTGTCACTTGGATTGCTTGACG
GTGCATCGGGCGACATTCGGGATCTGGATCTAGATAAAGATCGGGAGCGT
GGATGTTTACGTCCTGATAGACAAATCCCCGAGTCACCACTTCCCTTGCG
ACTGTGTCTTCGTCGGCGACCAGGAGTCATTGTTTGGTCAATCGACATCG
TCATGGCTTCCATACATTCGGTGATTCGGGAGAAAGACTCGTTCCCAATA
CTGTCACTCCCGTTTGAGGTCGGTGCGATCGATAGGAGATCGGTAGTCGA
ATGACCATCGTCACTCTGAATGAACGAGCGAGTTTCATCTAATTCGTCTT
GACTTTTCTGTTTGTTTCGTCCATTCTTATCTTTCCCAATTTTACTCGAC
ATTGATTTTCTAAGTCCTTTAAATTTGAAAAAGTTCTCAAAATTCTTTCC
AAGATCTAAGCTCTTGTTACGATTTTTAACAATTGTCGAGGTTGATTGTG
TCTTTTTGGGTAGCTCTGGTACTGATGTGGTTGAACTATATCTTGAAGAA
GCATCTGTGGAGCTTCTTGTTCGGTTGTACATTCTAGGTGTAGATCCGCG
CCTGGGAATCATTGGAGTATGCAAATCATCAAAAGTCTGTAAAGTGACTC
CTGAATAAGGATCTGATGGGCTACAATAATCAAATTTCTTTAAATCAACT
TGTGATTGACTGTTCGGGTAACGATAAGGACTCTTCTTAATTCCAGTAGC
AACTTGAATAGTGACTGGTAGCTCAGCTGAGAATGTCAATGCATGTCTCA
CATTGTCAATGATTGTTGTGGCCAGTATAGAGTTCATAGCTCGTTTACGT
TCAAGGGTTAAAAGTCCCAAATGTGGCCCATAAGATGAGTTTTTCTCTGT
ATTACTCAAAAATTGTACATTGATTGGTAATTTAAATTCTTTAATCAAAT
CTGCAACAATGTAACGCTTATGAAGTTGCTGGTATGAAAATGTCTCTGTG
AAGCTTCCCACAAAATGCATCGGGAGAGTGATCGTGCGACCGTCGTTATC
GTTTTGATCGTCGACTCGACAATTCAGTCCCGCGATATCACCATCGCCAG
TCATAACTTTATCTTTAAGCTCTAATATTGTGTCTGCTGTCAATTCAATA
TCGTCACAACCTAAAGCGTCTTGTTGCAGTGTCACGAAACTTGGTGGTGA
TTCACAGTAACAAAGTTCACGAATGTCTTTAAAAGTACGGGGTGATGTCA
TGGCGATAACACGTAACTTAAATGGACACGATAGCGGAATATTCAATTCG
CGACCATAAATATCCTGACCTGTGACATTCTCAANCACGATAGCGGAATA
TTCAATTCGCGACCGTAAATATCTTGACCTGTGACATTCTCAATCTTCTT
TTTCCCGTGAATGGTGAGAATTTGTCCGCTAGCTAGCGCATCATCTTCAT
CGATCATGTGACCTTGATGAATACGAACTACTTGAGGTAACTCGAAGTTT
GGATTGTCTAAAATGAATTTGAGTTTGTACTCTGTGTTTTTCCATACTAA
GTCGTCTGGATTCATACTGAGTTCCATAGGAGGGCTACTCGTTGATGATA
TGATACTCATTGCGCATGCGTCGATTTTTGTTGTCCTTGTTGTTGTTTCT
ATGTTCTTTTATTGTGCTGAAACGAAATAAGGAATACCATTAAATTTCTG
ATTACCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010642XLOC_010642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018984-exon-sc0000314-1575043694:59201..61576TCONS_00018984-exon-sc0000314-1575043694:59201..61576Clytia hemisphaericaexon
TCONS_00018984-exon-sc0000314-1575043694:58817..59141TCONS_00018984-exon-sc0000314-1575043694:58817..59141Clytia hemisphaericaexon
TCONS_00018984-exon-sc0000314-1510915933:59201..61576TCONS_00018984-exon-sc0000314-1510915933:59201..61576Clytia hemisphaericaexon
TCONS_00018984-exon-sc0000314-1510915933:58817..59141TCONS_00018984-exon-sc0000314-1510915933:58817..59141Clytia hemisphaericaexon
TCONS_00018984-exon-sc0000314-1491911889:59201..61576TCONS_00018984-exon-sc0000314-1491911889:59201..61576Clytia hemisphaericaexon
TCONS_00018984-exon-sc0000314-1491911889:58817..59141TCONS_00018984-exon-sc0000314-1491911889:58817..59141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:58817..61576 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.484098	0.678082	1.41851	0	3.27168	3.31017	7.82746	12.4588	1.46371	3.49907	0.941049	9.46868e-06	2.85714	1.29784	1.3794	1.66273	6.09428	4.52301	3.91476	5.90028	7.70237	11.1409	4.91223	6.27692	2.32559e-05	0	35.2396	30.4523	0.727848	1.5763
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR025946CABIT_dom
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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