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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018980 ID=TCONS_00018980|Name=TCONS_00018980|organism=Clytia hemisphaerica|type=transcript|length=483bp
gtaattaaaaagcAACCACAAGCCGCTATTACCAGCGCATAGACAACATC
ATAAATCAATTATAATTGTCGTTGccagagaaaaataatttcctaCCAAT
ATCTTCTGGTATTTGTAGTAAGACGTGATTCCCAATCAGAGTGGATTTGC
ATTACAATTATCGATGATCCGATaatgAAGGAGATTACTTGACATGCCAA
CCAACATATTGATTCTAGCGAAATTGGGTGCTGGTACTGGCAACAGAACC
ACTGCTGAACGTATCAGGCAGCACTTGAACAATTCGGACTTGTGCACACT
TCTTTGTGACGTCACACAATTCCAATCACCACGTGACCTTTCTGATTATG
TCATTCATAATGACGTCACTTGTCTCATTGTTATTCATGCGTACAGAgct
ggaaaatttttaaacgACATCAGTATACCATTTGCGTTGGTATTTGGTGG
AACTGACGTTCAATGTTCATCCTGGAATGATCA Run BLAST on NCBI transcript from alignment at sc0000314:198755..200720+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018980 ID=TCONS_00018980|Name=TCONS_00018980|organism=Clytia hemisphaerica|type=transcript|length=1966bp|location=Sequence derived from alignment at sc0000314:198755..200720+ (Clytia hemisphaerica)
gtaattaaaaagcAACCACAAGCCGCTATTACCAGCGCATAGACAACATC
ATAAATCAATTATAATTGTCGTTGccagagaaaaataatttcctaCCAAT
ATCTTCTGGTATTTGTAGTAAGACGTGATTCCCAATCAGAGTGGATTTGC
ATTACAATTATCGATGATCCGATGTAcgtattttgttatttttttataat
gtccAAATACACCTATCCGCAGACAAGtgtttcgtccttcccaggactca
tcAGTGCGACTTgggtaagcgagcatagactgctgttgtcgcaccagagt
gctcaaaacactaagTGTTGAGCTTCGCGTAATCGCTTGTGGTGAACGGA
GAAGCAGAGCTTGCTCCTCAACAGAGTCTATAGAGTGCTTAATACATGTC
CAAATATACAGTTGCTCCGATTCATTCGATCTACAAGGGGACcaaaattt
tgtgttaaaagaTTCAAATCACAGAGAATATTTTTTAAGACATTCCAGTG
GAAGGACTAAATTTAATGTTTGATTTAGAATTACAGaggctcgaattaga
gagacaGGTTGGCTGTAATGTTCAACTTTTGTatttaaaataatcataat
ttttattttttattttttaagaatgAAGGAGATTACTTGACATGCCAACC
AACATATTGATTCTAGCGAAATTGGGTGCTGGTACTGGCAACAGAACCAC
TGCTGAACGTATCAGGtgcttatttatttattttaaagcGACGGGAAGAG
TGGGCCTGTAAGGAATTTTTTTGGATGGGGTATGAACACAGatctataaa
gcccgaagggataagtcaactttaagctttctccagcaaaagttttcgga
gcgcgagatcaaaaaaagtaggcagcaaacgctatttcgcatctctcaaa
caaATTGcctgttgtcacgtgatttctttggtaggaaatcctaccaaaac
ttgcttcacttttcgatgaAGGCCGCGGATCTAATGAAGCCACCATtggt
ttttttcatttaatatACAAACAGAGGCTGGACGAATCTCTTCaactcaa
aataaatttttgaaaattatgtggataccccctgaaaaaattacagaaat
ttcatttcaacccaggaaaaaatgaaaaaagacttCCCTTAGACCCTCTG
NTGGAAAAATGAcagaaatttcatttcaacccaggaaaaaagaagaaaaa
aaacttcccTTAGACCCTCTGCGAACTGTTCTAGGAATTCTTAATGCAAC
GAACGTATTAAAGTCTCATTTTCTATTGTCTGGGAAAATTGAAAGAACCC
CCCTTAGGGGCTTCAGAGTTATTGTACCTGTCCTGTAAAAACCTTTTTCA
CAATATCTTTTTAGTCGTTCTTTTCAAAATTGACAAACCTTTTATTTTTC
CAGGCAGCACTTGAACAATTCGGACTTGTGCACACTTCTTTGTGACGTCA
CACAATTCCAATCACCACGTGACCTTTCTGATTATGTCATTCATAATGAC
GTCACTTGTCTCATTGTTATTCATGCGTACAGAgctggaaaatttttaaa
cggTTTGGAAATTGTATTACTAAACTTACAGTGCGTTGTTAAactgggct
tttccagaaaaaccgTTCAAAAGTGGAAGATATATTGTCAAAGGGAACAA
AAAAAGACTGTCAAGCACCTCCTTTTTAAACAACTTgatctgaaaatttt
tccacATGTAAATTTGATCAGCATTCTGGTGGTCCACCAATGTTATCTGA
TGTAGGCGGTGAGTGACTAGGAGCTGAGGGTTGATGTGGCAATCCACTTA
AGTATTCAATCTTCCACAGGGCTAGTGCACATAGAAAAGGATATAGACTC
CCTGACTTCCACGGCCAACACTTACATACTTACTTCAAACACCTTTCAGA
CATCAGTATACCATTTGCGTTGGTATTTGGTGGAACTGACGTTCAATGTT
CATCCTGGAATGATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018980-exon-sc0000314-1491911889:198755..198927 | TCONS_00018980-exon-sc0000314-1491911889:198755..198927 | Clytia hemisphaerica | exon |
| TCONS_00018980-exon-sc0000314-1510915933:198755..198927 | TCONS_00018980-exon-sc0000314-1510915933:198755..198927 | Clytia hemisphaerica | exon |
| TCONS_00018980-exon-sc0000314-1575043694:198755..198927 | TCONS_00018980-exon-sc0000314-1575043694:198755..198927 | Clytia hemisphaerica | exon |
| TCONS_00018980-exon-sc0000314-1491911889:199376..199469 | TCONS_00018980-exon-sc0000314-1491911889:199376..199469 | Clytia hemisphaerica | exon |
| TCONS_00018980-exon-sc0000314-1510915933:199376..199469 | TCONS_00018980-exon-sc0000314-1510915933:199376..199469 | Clytia hemisphaerica | exon |
| TCONS_00018980-exon-sc0000314-1575043694:199376..199469 | TCONS_00018980-exon-sc0000314-1575043694:199376..199469 | Clytia hemisphaerica | exon |
| TCONS_00018980-exon-sc0000314-1491911889:200158..200306 | TCONS_00018980-exon-sc0000314-1491911889:200158..200306 | Clytia hemisphaerica | exon |
| TCONS_00018980-exon-sc0000314-1510915933:200158..200306 | TCONS_00018980-exon-sc0000314-1510915933:200158..200306 | Clytia hemisphaerica | exon |
| TCONS_00018980-exon-sc0000314-1575043694:200158..200306 | TCONS_00018980-exon-sc0000314-1575043694:200158..200306 | Clytia hemisphaerica | exon |
| TCONS_00018980-exon-sc0000314-1491911889:200654..200720 | TCONS_00018980-exon-sc0000314-1491911889:200654..200720 | Clytia hemisphaerica | exon |
| TCONS_00018980-exon-sc0000314-1510915933:200654..200720 | TCONS_00018980-exon-sc0000314-1510915933:200654..200720 | Clytia hemisphaerica | exon |
| TCONS_00018980-exon-sc0000314-1575043694:200654..200720 | TCONS_00018980-exon-sc0000314-1575043694:200654..200720 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000314 | supercontig | sc0000314:198755..200720 + |
Blast
The following BLAST results are available for this feature:
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