TCONS_00018969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018969
Unique NameTCONS_00018969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018969 ID=TCONS_00018969|Name=TCONS_00018969|organism=Clytia hemisphaerica|type=transcript|length=1544bp
ctgttttaaaatatttctcagACACATTTTTCAGTTATTATGGAAGTGTA
gagtttatttttttgttttgatttttcgtaGGGGGAAGAGAGGCTGTTCT
TAGCTGTAGCTGTACCTTAGCGCACTTGGCTGCACTCTTTCAGTAGATGT
CCCACACAGAAACACATTCACTTAAATCGTAGAATCGCAATTCATTTCGC
AAATTAGCTGTTTAGTTTTCATCTGGTGCACGGAGGAGTGATTTTATTAT
TGGACTTTCGAGAAAAAACGGAAACTGTTTTCTATTTAATTGAACATAAT
GGAGGAGACAAGACAAAGCATTTCGAATCCAATGGAAGCTAATGAAGGga
aaatgtttATTGGGGGTTTGCACAGCCAAACATCGTcagATTCGTTGCGT
GCTTATTTCGAGAAATATGGAGAAGTAAAGGAAGCAGTTGTCATGAGAGA
TACAGTCACTAAGCGTTCAAGaGGATTCGGCTTCATCGTGTTCAATGATT
TGACGGCTGTCGATAAAGTATTAGAATTCACTGATTGTCATATCATTGAT
GGCAAAAAGGTTGATCCAAAGCGAGCTGTTCCGAAGAAAGCGACACCTGG
AGCAAATCAGCCATTTCGCAAAGTGTTTGTTGGCGGTTTACCTGGTGACG
TCACTGCAGCAGAATTGCAAGAAtatttcgaagccttcggaaaGGTCACG
GAATGCCTTTTGATGCAAGACAGACAAACAAAACGACTAAGGGGATTTGG
CTTTGTGACATTTGAGAATGAGGCTGCGAGTAAAGCAGTTTGTGATGCTG
GATTTCATAAGTTGAAGGGAAAAAATGTGGAATGCAAGCGAGCGCAACCG
AAGGAAGTGATGTTGTTACAAGGTAAAGGGCGTGACCTTCTGGTTGGTGT
GAATTTGGCGCCATTCCAATTGAATCGAAGTAGTATCTATCCTAATGGAA
TCCCAACAAGTCCCATTGCTTATGGTGTACCAGaTTACGCGAGTTCACCT
CAACTTTACCAACAACTTGTTAaTTGGATGAGCATGGGCAGAGGAAAAGC
ATTCACTGCTCAAAACTACGTCACTGCTGGACCACCACAAGGCTTTGGCA
ACATGCCCGATCACCGACGACACGCCTCATCGCAACAAACACAAGGGGCG
GCCACCACACAACACCAACAAGCTCAATATTTCAACAGTGATTACAACAA
CACTGCAACTACCGCATCTGCTGTCACCACTGAAACACCTTCTCCACAAA
ATCAAGATTACCATCACATTAGTTCAGGACTCACTCAAACCACAACACGG
CCAAATGCTGCTGACATGAGTTTCCTGTCTAGCCGCACAACCTTCGGGAA
TGATCAAGCACAAATTTATCACGGAGCACAGGCTGCATCACAACCAGCAT
TTGGGCACGCTAGTCTACCACCTGTATGATTTTACTACTTTAGCTTATAA
CTCGTCTTATTGACCCAATAGCTtctcaaaatgaatttgatcaAAATCTC
ACCTGTAAGAATATTCCAAATTGACTTAATCACAACTACAGTTC
Run BLAST on NCBI

transcript from alignment at sc0000314:140111..154137+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018969 ID=TCONS_00018969|Name=TCONS_00018969|organism=Clytia hemisphaerica|type=transcript|length=14027bp|location=Sequence derived from alignment at sc0000314:140111..154137+ (Clytia hemisphaerica)
ctgttttaaaatatttctcagACACATTTTTCAGTTATTATGGAAGTGTA
gagtttatttttttgttttgatttttcgtaGGGGGAAGAGAGGCTGTTCT
TAGCTGTAGCTGTACCTTAGCGCACTTGGCTGCACTCTTTCAGTAGATGT
CCCACACAGAAACACATTCACTTAAATCGTAGAATCGCAATTCATTTCGC
AAATTAGCTGTTTAGTTTTCATCTGGTGCACGGAGGAGTGATTTTATTAT
TGGACTTTCGAGAAAAAACGGAAACTGTTTTCTATTTAATTGAACATAAT
GGAGGAGACAAGACAAAGCATTTCGAATCCAATGGAAGCTAATGAAGGGT
AAATTAGTTCATACTGTTATTGTGCATTTTTCCGTGGAAAACATTGTTTC
CGATGTTTCTTTGGGAAAAGAAAATGGAACTTTTTTTTCCATAAAGACTA
TTTTCTGCTTCATCGAACACAATAAATATGCATAATAAATGAAGTGACTT
TTTCTATACATgtgtttttttaggaaaatgtttATTGGGGGTTTGCACAG
CCAAACATCGTcaggtaatttttgtttattttgttatattatAATATCAA
TTTCAACTTTAGTGTttgtttcaattaaaaaaagttgacgTAGCTTGCGA
aataaagtttttgtttatagtgtgaatttgttgaaaaatagaGCTCCTCC
CCTCTCTAGCTCAAAGAAAAGTTATTTTCCCTTATAAAGTAATGCTTGCG
TGACTTTGCAAGTctataaaagtttttaaaataaaaatataaaaatagtC
ACGatataattttctaaaaagggAAATTATAAGTTATTTAAAGACGGTTC
TTTCGCGGGAGAgctatgttttaaatttttttgcaaaagaaaattttaaa
tcagAACATAATTATGACAGACGAACAAGGGCGtttgttgaaattgaata
taCCGAAAAATGTAGCAAACATGGCTGTTCATGGTTTATGACCAAGGAGA
ACAACATGTTTTCGAAAGAATTCACAAAGAACAATAACATTTTTGATAAT
CTTCTGCTTTTTTGCTTGCGacttttaatatatttttgtaaCTTTCCTCA
TTTGTCGTGCGATCAAATTCCCAGCTATGAAAACAAAGCTGAAAACAAAG
CTATCTTTTGCTGTATAACGTCAGTGAAAGCAATGTTTCAAAAACTATAA
TACTAACTCACAAACCTGAGTGTTACAACTAAAACTAAAATATCGCTATT
CTGCACTTCCCAAATGATTTCTTTgagaattttaattttatcaTATATTT
GAAGTTTggaaaattggtgattttttcAGGTCTACTAAAGATCCTTAATT
TGACATAAGGCTTACTCTCAACGGTTTCGAAGTTTTATTGGGGAAATAGA
GCGAgcttaatatttcaaaaatcgagttatcttttggaaataacatttaa
aaatttggatttgCAGTCAAAATCAactaatttctttgaaaatacttgaa
tacATGTTCTTAAAGACAAAAAGTCGCCCCTTTAATACAATGAATTATAT
ACATTAAATTACCTTCtattaaacattaaacaaaGTTTCAAATGGGAACC
TGAGGCGGCCCATACCGTAAAGCCACTGTCCTATCCGACTAATGTTGACC
ACTCCCCTGAAATTGGAAGAAGCATCTAAacgacacccctgtctcataat
GAGAatttttcccacagtggggatggAAGTTTTTATTATAATCTCAAttt
tccttaaatttcaaattaggaTAAAATGAAAGTCAATTTGTAGGGTAACA
TTTTCCCAGCGGAGAAATTTTGACCCAAttttctaccgggtgcgccacaa
aaaagtttctctctttgaaactaattttctcgaaatctaaaaattttaaa
agaaccattcctatttcatttgaaagaagaaagatagaatTAAATtctga
tgggtcatttattaaatttgattaattAGATCAAaggttatgctcaattg
aataaaaaagttactttcagaaagtgctcgaaaatgttaaaaatcgacct
atcctagttttaaagagagaaacttttttgtggcgcacccggtagtggGT
CTGACAAGGGGATGTCCAATGATTTCACTAAAGAAGGAATTGCATAATTA
CTCTTCTTTCTTGGTCGTTTTCAGATTCGTTGCGTGCTTATTTCGAGAAA
TATGGAGAAGTAAAGGAAGCAGTTGTCATGAGAGATACAGTCACTAAGCG
TTCAAGGTTTGTCCTCACTCATTCATCActgcgttttttataagaaactc
aaAAGATTTTGAAGGCTTTGAAACCCTTCTTATTTTAggatttttgagta
ttttggtCTAATTTCTCAAGGAATTACATGTTGTAGACTGTGCTAGcttc
aaaatgttcttagacTTTTGGCCTCGAATCCTCATATTCTTGTAAacgat
gttcttattttaaaaatgttaattttttttaacccttACCCAGAGCTTTT
GGAAGGTCGAAAGCTCAATTTCACGATGTGCCCAGCTAAAGAGAAAATAT
ACCTTTTTCGTGTGGTGACTtttctttttgtgttttatAGAACTCTACCT
TGCGCACCTCCTTTCATTAGGAAGGGGCTTCTTCTTAAAATTGGAAGATT
ATTTTCCAGGTTAAAGGGATTAGCGAAAAAACAGGGCAGTGGACATGAAG
TAGCGAAGAATGTTGAAAATCAGGTCTATTTACTTCCAAGGGCGAATACC
ATATTTACAATTAGTTGCCAATATTAGTGCATTTTAAGTAATCCTTGCTT
TGTACTAAGATGCCAAACATTGGGAATCCCTCAACCGCTTACCAActgaa
ttaaatttttttggcgAAGAGGATTGTAACATATTATGACGCTTTGAGAC
TAGAGACCGTCCAATTTTACCTGTTCAATACtagctttttgaaaaaagcc
gACATAACTCTGATCATGTAGCTTCAAGTCTctaattaccttatttttgg
gggtATTTAAAGGTACAATTACATACCCCCGAAGatgatgctatcgtccg
tttaaaggtcagtaaacgcgggaaagagttagggcgtcagggcggtttat
gggaaaaaagtggcggtagagttttggaacaaaacactgtaaacatctcc
gccactgcttaccccacccgaatttatcacgcctctcctaaactattacc
tttttagtgatcttgtgtagacgataggatcgtctaatacCCCCGGTAAT
CAGCCCCACCCTCATTTTTCAAACTCCCTGTTAATTAAGCACCTGTCAGT
ACCTCGATTGGAGCAATGTTTTAGGAGCTACTTTTTGATGTGTGAATGAA
AATGGACCTATTTGGTATCGGTACTATAGGAAGAAAATTTGAGTATTTTC
ATAAATCAAATCTTCATGATGTATGAGATTCAAACAAAGGTGCTCGTTTA
TGAAATTATGAATTGAGGATTTGATATGAGTCGATATAATTGGTTGAAGA
AGAAGTTGAAAAGAAATGCATGCATGTTTATTATTTGCTTTTCgttgtgt
ttattttttatatattttttttgctgttgcTTGGCATGACTTTTCATTTC
TATTGACAATCTATGTTGGCCTGAAGTTTAGTAAAGTTCCTCGTGTACTC
CTATGTTCGAACGAGATAAAACCTTTGTTTGTTGTCGCTAATTTGTGATG
GATATAAATTTGgatgttgtaaaattttccgttGTGACATAAATGTTATA
GGTTCAGATTTTCttcagaaaatattaaaataaagcctttacattttgtt
ttaaaagaacaaactatataagaacatatagcttggcttcgatggccaaa
atattataaGAACAAGTGAAGCTTTGTGGActacacccaatttcttaaag
gaaatttcacaaaatatcatataaacaaatgaaaaatttgaagacgattt
ttaggcttgaaactaaaaaagtcaagaacatccgaaggcttgaACAGTCT
CATTAAAAAACAGATAAAGCCTATGCTTGGTAATCTCATGCTAATGTGCA
AAAAATTTCCCTTTTATTCACGCGAACGACTTTGTTGAATCAGACGTCCA
GGAATCTTTCAacagagaaaatcaaaaaaaaatcatcagtaAAGTCAATC
AGCTCATCAGATTTCATACAGACTAAAATATAGCGTATTGTTTTCTTGCA
AAGaaagaaaccttttttttatttctgcaAATGATATCAAATCGCatcaa
acagttttttaatcaatttccAATATGTAAGGGGGCTGATCTTTTTTACA
TGTACCATGTACTAGAAGACAAAGAAAGCATTTTTGTTGATTCTCCGAAA
ATCTATACCCTGTCAATCTTTTTTATTCATCAGGTTTAACGCGAGATACA
AATAATCCTTTATTCTCACCATCGTNTCCCTTTCATTTACGCGAACGACT
TTGTTGAATCAGACGTCCAGGAATCTTTCAacacagaaaaacaaaagaaa
aatcatcAGCAAAGTCAATCAGCTCATCAGATTTCATACAGACTAAAATA
TAGCGTATTGTTTCTTGCAAAGAAAGaaacattcttttttttatttctgc
aAATGATATCAAATCGCATCAAGCagttttttaatcaatttccAATATGT
AAGGGGGGCTGATCTTTTTTACATGTACCAAGACTACAAGACAAAGAAAG
CATTTTTGTTGATTCTCCTAAAACCTATCCCTTGTCAATCTTTTTTATTC
ATCAGGTTTAAATGAGAGATACAAATAATCCTTTATTCTCACCATCGTGT
CTGGAGCGTCTCTGTCAACCACAAAATACTATTTAACGGGTTTCTCACTT
CCCCGTAAATCATTTCGATTCAAAGATAACCCGGTGATTTTACGCGATAA
TTCGTTTTTAGTTTCGCCCTAAAAATGTATAAACTCACAAGAGCACTCAA
AAAAGTAGTGAGTCAATGACCAATCCCTTGCTGTATGTAAGAGaccattt
ttaatattttaattacAGAATGCAAATCATTATTCGAAAGagaataattt
ttaaattgGCAATACTTTTCATGTTCAGTCGAGAATCCATTACTCTTGCA
GTGGCCTTCGGTTGATCATAGAAAAAATGTCGTTTGGACATCTGATTCTC
AGGCTTATATACATATTCAACACGAATACACGTTTTGTTTTaataacatc
caaaaatttgaagccttcggacgttcttatctttttgagttttaagccta
aagatgttcctaacatgttcttatgttcatcattttgtgagtatttttgg
gtaattttgtccatttcccCAAGAAACttgctgttttagagtccggaaag
ccttaaaatattttaggtttattcttaaaatttttgccatcgaaaccgta
tattcttatatagttttttcttataagtcaGCACGAATATCCCATATGTT
CTTCTCCTTTTTTACATTAGGTTTGTGATATGCAGTTTTGTTCTAAAATT
GAGAATCTTTGTCTGATAAGATTTGTGACTGAGCCCCTGTGAACTTTTAT
TGACTTTAACCtgatcaaattttgatattttcaagtGACTTTCTCACGCA
CCCGCACTTCAAAATAGCTGGAAACTTTTCTTTAAAGATTAAGTTCGTCA
GCTTGAACTTTGAAAGTGCAATTTCAAGACTCATTTGAAAATCTGTTTGT
AGAGAAAAACTTCTTTCTCTGTTACAATACCGACCAACGGCTTAAATATG
TGTTTGTTCCAAACTATGTTCATTCATTTTAAGACAATAATATGTAACAC
GGTACATTTTGCATGTAGTGGAACCAACGACTATATACTATTACGACCGA
GTTAACCAACTCGAATTATGATTTTGGTTCGCTGGatgtaaattttcttt
caaggaGACTCTAACTGTGTGAGGTTAAACAACTGCCCTTGTTAATTTTA
TCAATAACGAAAAAGCCAGACTTGTTTTAAGATTATTATCTTAAGCCCTA
TGAGTTTCGTAAGAACCTTCTTTTTATGAAAGGGAAATAATtattataat
ttaaaatttatgtttttaccTGAGAATAATAAATTCTCTTTCTAAAGCCC
AACATTCTTTGTTGACAATTCAACTTCTGAGAAGGGCTGTTATTTAACCT
TTTAGAGTGGTATTTTTCGAAATAAGGAATTAACACCAAAAGACCCTGGA
CCTGGCTAAGGAAATGAGAACTATTCCTTTAAAGGGCTTTAAACAGTAAT
GATTTTAGTTCGGCGGAGATTCCTCGGTTGTCTAGACAAAAGAGCATTTT
AAAACTAAATCACCTTACACGTTTTTCAGGATGTTTTTTCATAGAggaca
aaattttttaaacctttggtaatttctttatttctaagcctattaatgtt
cttaaaatgttcttattttctggGTTTAAAGAGTCtgaaaagccttgaaa
tgttcttaattttgtgTTCTtaaatatagtttgttcttaataAAAGAACA
TGTAGTTGATGTTAGTCCGTAAACATTATGCTCATCGATATTGTAAATGA
GCGTTTTTTGAATTCACCTCGGAATTCTGTTTCTCtttgacagaaaaaaa
aactgtcatcaatcGTGGTTtgcagttttgaaaataaaataacttTAATC
TCTCAAATAGGATTTGTctgaaaaaaggttttttttaggATAAGAATCGG
AGAATAGAATACGGATGTTTTAATCTTGGACGATTCCGGATTTATGATAG
ATTCCGAAATTTTACAGAGATGTTGAAGGAAGTTTTGTTGATAGATGCAT
CAAAGTTGCCAAACTTGTTGTCGAAAGTTACTTTATTTGTTTATGGGCGC
ATTTCGACAATATTTACGACCACTGGCCAATATTTACGAGCATTTACGAA
AAAGTTCACTGACCTCTTCGCAAAATATAAACATGGCATTTCGTTAAAGT
TGCTTCTTTTTTTAGACCAAACAAGTAAATAAAACACTCCATTTTTTGTT
CGGAACTTTTCATGAGCTATCAATGCTTTAAAATTACTTTTGGTGAGCTC
CCATGAGGCAAAACCTAAGCCCTACCTGATTACTACAGCAAAATTCGTTA
TTATTTTCCAAATACAGTTGATGTTCTCTAATTCAATGTTCTTCTATTCG
Atatgctccattattcgataatattgaaaatcgaattagagagcgtcaac
tgtaattcaCAGTGTGCCTCCAAACTGATTAAAAATTACAGATCTCTAAG
AGTCGTATGGTTCTCCCATGcttctttagttttttcttggTCGAATTGGC
GGCTGCGATTTCGCTGCAGCAATTGATATTATGATAAACGTTCGTCTGAA
TTATATTGGAAACATCAGGAAAGATCGGACACAGAAGTCTAGGTCAATGA
ATCAAGAGGtgaagttgatcaaaatcaAGGTTGCCCTAGACTAACGTGGA
AAGTGCAATAGATACCATTTTACCAACTTTATTTTGCAAATGGTAAATGT
AAATAAGAGCCAAGAATGCAAACAATTTAGACCTTAGAACGGTTTTACTT
GCAACTTGGCTCAATGATATGATTAACATTTTCACGTCTTTTATACATTA
GATTAAGGACCAGGCTATGTTCTAGCCTTTCCGGGCTAACtgcctaacga
caaacggcgctacatcactaTTGTGCTAACAAAGTAGATCTAGCTCTCTC
GAcgcgggtaccactttcaaaaaattccgatcaaagattttgcttaccgg
gattgagaaactgccTCCAGGGTCAATATAAAGCTCAGAGCTCATTTCTT
CTCCCATGGACATGCTCCTCCGAATCGATGTCAATGttctcattttttct
ttatagaGGATTCGGCTTCATCGTGTTCAATGATTTGACGGCTGTCGATA
AAGTATTAGAATTCACTGATTGTCATATCATTGATGGCAAAAAGGTAAGC
ATTAGTCTAGCAGAATTAGCGTTTTATAATTCCCAACAAGCTCATATAGA
TAAGTTGCTAAGAGGATACTCTATATCTCTTGAAAAAAAAGCCCTATCGA
TGCACGACTGGGAAAAAGCTCTAGACCTTTTGGTGATTCTGACAATTTCA
AAGATATTCATAGTCTTTCAAAGACAACCTACTCTGGTACTCACGAAGGT
TAAGATGGGAATTTTGTCCGGGTTTCAGTAATATTTCAACTAGTTTTATA
TTTATCAGTTCTTTCTTAGTATTATTTTGTCGGGAATAAGGtattgaaga
atatttttctgttattaTTTTCCGTTATGGAAATATAGTACCATATAATA
CTATCATACCATAACTATCTTCAGAGATAGGATggttggaatcactgatt
gagAAAAGATTTTGActgctaagaaaaaaaaaagtttcaattggCGATTC
ATACCTTCCTTTGTTCCCAgttctaaagaagggtgtcggaattggatgag
ggatgtcgacattagacaaaCTTATGGTATAATTTAAGACAACATGCAAA
TGAACAAACAGTAGACGGGCAGGTAGAATATAAATGTGTAGGAACAAACG
ACAAGGTTTCTAAGGTAAAAATATATGTATGTGAAGTGTAAACCCTCTCC
TTTATACATTTTAGGTTGATCCAAAGCGAGCTGTTCCGAAGAAAGCGACA
CCTGGAGCAAATCAGCCAGTAAGCAGTCATCTTACTTTTATTTAGAAAAC
ACATTTACCAAATTGAGCCTAGGAGTCACTTTTTTCGTCTCtttgttttg
taattttcctTAACCATTTTCTTCGAAGGGTTTTGGAAAGTCAAATCTGA
TCAAAACAGTGACCTAGTGTCTTTTATAAAAATAGTATTTTCATTTGAGT
GATACGATCTGACAAAACCAAGAAATGATATCTCTTCACTCTGATAAGAA
AAACATGGCGACAGTTGTTgctttttctttgtatattaTTTTCCAAGTAA
TAATGCACTTGactattaaaaagcctttttcTGCTCCAAGAATTTTTTGC
CGTGCTAACAAAGATTTCACTCATTTTCCAGTTTCGCAAAGTGTTTGTTG
GCGGTTTACCTGGTGACGTCACTGCAGCAGAATTGCAAGAAtatttcgaa
gccttcggaaaGGTTAGATTTTTTCTCTGTGTTTTGTGAGAATGAGAATA
AAAGCTCTCCAATATGAATTTCCTTATCCGATGTATgtaaaatgatgtaa
aatgctcagtgttaaaagtttttccgtCTCAGGCGGATTTCTTTCTCAGC
GAAATTATGCAGTGGAgttcttaactcgaacctctgtaactcgaatttct
ccttaactcgaacaagttttctcgatCCTTCCGGTAGCAACGCCTTAGAA
CCTTACTTTATAagtcgaaatttccttaaatcGGACAAAGTTGTGTTCTC
TGTGTGTGTTCGAACTGTGAAGACTTTACTGTTTGAAGAGCCTTTTCTGT
CCAAAAGTTTTGCACAATTAACCAAAATTTCACGAATTATGTGCTATAAA
TGagctgtgtaaaatccattttccgtctcagacgaaaaaccTTAGTTTGA
CCACTGGATGCTTTTTCAGAAGATAATTTTTACTCTCTTTCTTTTTCAGG
TCACGGAATGCCTTTTGATGCAAGACAGACAAACAAAACGACTAAGGGGT
ACGTCAGACTGTCCTTTTTGTTTGGCTCTTATAaagggtgtcccagaaaa
aagttcccttCTTTGAAGAGAATTTTCTGGAGTTCTATGGACTGTTAAAG
AATCGATTCATTTACAttgcaaatttaaattttgaaggaaaattttgaCA
GCTATATAAAAAGTTTTTGTCTAAATGCTAAagattacttttcaaaaaag
tcaaaaaaaggcGAATAATGAGGGGTATGTCTTCGAAATTTTGGTTCAAG
TCAAATTAAATCAAATCTCTTTTGTATTTCAGGATTTGGCTTTGTGACAT
TTGAGAATGAGGCTGCGAGTAAAGCAGTTTGTGATGCTGGATTTCATAAG
TTGAAGGGAAAAAATGTAAGTCATTACTTAACCATGGTCCTGGGATGAGT
CACTGGATAATTCACAATTCAATTTATAGTAGTAGTAACAACTTTCAAAT
gttatagaaaaaaatatattgtcTGATCGGGAAAACAGCTTTAAGATATT
TAGGACTACCAGCGTCCTGGAAAGTCCCGGAAAATCgctgaaaatcatta
aaatatcCTGAGAAATCttcgaatttgaaaaatttcaaatcaacttTATT
TTCTGATTAGTAATTATTTTGGGTGCTTGGTGCGCAAAATTTCATACTGG
TGGTTCCAATTTTTATGCGTATCATTTGTTCTTGTAATTTTCATACTTTC
AATCCAATACATATTTTTTTCCAGCTTGAAAGATATTCTAATAAGTGTAA
TCTAAATTACCTGTAAAGTCCTGGAAAAGTATCCTTGAAAATCCTGGAAA
TAGGACATAAAAAGTACTGgtaaatcacaaaaaatacCTTGGAATTCCAG
TTTCATTTACGGCTGGCAATCCTGAAATTACATTCAATCTGACCTGTAAA
ATTCCCTTGGCTTGGTTAATTTTTTACCACAGATTCTCGTTTGGTTGCAA
CCTCTTCACTCTCCCTCTTTTTCTATTGGGCAGGTGGAATGCAAGCGAGC
GCAACCGAAGGAAGTGATGTTGTTACAAGGTAAAGGGCGTGACCTTCTGG
TTGGTGGTAAATATCATTTCTCTTCGCATTTCTCTACTAGCATGTCGATC
ATGAAATAAGGAATCTATACACAATATTCTAAACGTGACAAACATTGAAA
AACGAATTGGTAAAATGtgccaaatttgccaaattttggtttaaaatCAT
TACTAAAATTGGGAGTTTTGAAGTTGACCCATGTAAAAAAAAGGTCAGAA
CATGATTTGTGTATAGATTTTTCCTTATCAAGCGAGTTCAAGCGAGAGAA
CTTGGTTGATTGCTTGAAACCGCTTCCTCGTAGTTGTAGAAATCGTAGAT
TAGTGATTCAATATCATCAGAAGGGCTCACACTACAAAAAAATATTGTGC
TCTTTTAAACAATTGATCCAAACGCCAGAAATATTTATTACATCGAGTAT
TTTGACCTCTGCGCTGTCATTATTGAAAATACTGATATATTGCTGTAGTC
TAAAGTAGCCTTTTTAATTTCCTTTTGTTTTGTCCATACTAGCTCCCTTT
GGAAAGTAATATGAGAGTTCATCAAAAACCACCTTCGTCCCACATTCAGA
TAGGCCATTATGAGAATCCCGTATTTTCAAACGTCTATAGTTTTTCCAGA
CCCGATTGGTAAACTTTCCTTTCTCCTCTGGGACACTGACACTCACCAAA
CAATTAATATGTAGACTTCCCAAGGCTTTTATGAACAGACTGGATATTGT
TTGGTGACAACAGTTGCGGAATTGACGGAGGTTCAATATTTATGAGTCTT
TCTTTTAGCCATAGACCTTATAAGTAACTCAAGATTAATTTTGAACACCC
TCAGATCCGCCACAGGGTAATGATTAACTGAGGATGGGATGGTATTTTTG
CCCGGGAAGGTCCGTCCCATTGATCTTTGAATAGACCCTGGAGGCAGTTT
CTCAATCTCGGCtaaccaaaatctttgatcggaggtTTTATAAATCGTAT
TCTTCCTTTAATACTCGCGATGATCTAGTGCCGTTTGACGTTAACTGACA
ACATTGCAAAGACTTATTTACAGGCACAACTTAAAAACACTTCGATCAAA
GATAGTGCACAAAGCTTAAGCCAGGGTCCTAAAAGTCAGTGCTTCGTTCA
CGTTTACTGTACTGTATGAACTTTTAATGAAACAGTTTAAATGTTGTTTA
TGGTAATAATTATGTTACATCTTTCTTCGTCAGTGAATTTGGCGCCATTC
CAATTGAATCGAAGTAGTATCTATCCTAATGGAATCCCAACAAGTCCCAT
TGCTTATGGTGTACCAGGTATTTCTTCTACTGCTATTTACGCCCCAAGTT
TCTTGGATTCTTAATCATAGCGATTAAGGTTTCTTTTTCATGTTCTATAG
ATCAAATTCGGAATTGGTGTAGAGAAAATTCTACACTTGCATTGTCTCAT
CTTCAGATCTACCTTTCTGGATCCAAAAATTCTAGCTTCTCATTTATTag
cttctcaaaaatttttaactttaagCAAAGGGCACTTGGAGAGCTTTCAT
GAATTCCtaactttttttaatcaaaatggaTTCCATGATTTCCGATTCTC
AGTAGCAACTAGCTCAAATCAGACTAATTGGGAATCCGACTGAAAATTTG
TACTAAAGAACCATAACTATTAATTTTTAAGACCATTCATAATCATTGCA
ACAGTTTAACGattattctttttcattttctatagaTTACGCGAGTTCAC
CTCAACTTTACCAACAACTTGTTAGTAAGTCATTTTTACATTCATTACTT
TATAGACCAATTGAATGTTTAGGAGTATCGAGACATCATTGATTGAATTG
ATTTTTCTCGAAAGGATGAAGtactttaaaaacttttttgcgaGGATTGA
CGAAAATCTTTCATGACCGAACGAGGGGTGCTACATACTAGTATGTAAAC
TCAAACAGGGCTTATAAATAGTTTTAATCCTTTAATAATCACTTTTTTTG
TGAAAGCAAGTGAAAGTAGTATTCCACTAGTAATTCTCTTTTCAACGAAT
ATGAAACTGCAATCTAGTTTGAAtcatacccggggggggggcactcgatt
caaaaaacGACCATACctgcggcccaaaattaggcctttgaaatcggacc
cttacagtgcagagaaaattttgcaaaatttgggcaaatttgagccaaaa
attcGTACTCGtgcggtgcattttcttgaaatttttttacctttttcact
tttcagaTTGGATGAGCATGGGCAGAGGAAAAGGTGAGACGTTTCTTCTA
ACTTGGATGAGACCTGTCTGAATAAGAGCTACGGCTTCAAGGGAGTACAG
CCGCAGGATACTAACCCTGATTTTCACGCAAATTTGTCTTAGGTACCAGG
AAAAAAGTGACCCATGCCCCCTATTCCCCCTATTTAAGAGACGGTCACCA
AGAAAAACATGGGTACACCACCCTAGGAAAATGCCTTGTAATACTAGCAT
TCAATTTCACTTcgccaaaaagtttttttcttctttccctTTTGGTAACC
CGAAACTGGGAATCCTTACCTATTTTAGCCACCAAAAACAGTTGTAATAC
CAGTTAACTTCTTTGAAATTAGACACCACCGACCGGCTATGGGTCAGACA
GATCATACAGCTGTATCACCCCCATCCCTTGACAGCTTAACTTTGaggaa
aaaagaataaaaaacggTTTTGTCAGGTTCTATTCAAACTTTTGGGACTA
ACGACCTTCTCACCTTTCAGCATTCACTGCTCAAAACTACGTCACTGCTG
GACCACCACAAGGCTTTGGCAACATGCCCGATCACCGACGACACGCCTCA
TCGCAACAAACACAAGGGGCGGCCACCACACAACACCAACAAGCTCAATA
TTTCAACAGTGATTACAACAACACTGCAACTACCGCATCTGCTGTCACCA
CTGAAACACCTTCTCCACAAAATCAAGATTACCATCACATTAGTTCAGGT
ACATCTGTCTATCCGCCAGTCGTAATTATAATTTTGGTTTTAACGAATTT
GGTTTTAGAAACCCATCGTTTTATTAACCGTCTAATGTGTATTTTACGTT
TCTTTGGAAGGACTCACTCAAACCACAACACGGCCAAATGCTGCTGACAT
GAGTTTCCTGTCTAGCCGCACAACCTTCGGGAATGATCAAGCACAAATTT
ATCACGGAGCACAGGCTGCATCACAACCAGCATTTGGGCACGCTAGTCTA
CCACCTGTATGATTTTACTACTTTAGCTTATAACTCGTCTTATTGACCCA
ATAGCTtctcaaaatgaatttgatcaAAATCTCACCTGTAAGAATATTCC
AAATTGACTTAATCACAACTACAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010636XLOC_010636Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018969-exon-sc0000314-1491911889:140111..140458TCONS_00018969-exon-sc0000314-1491911889:140111..140458Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:140111..140458TCONS_00018969-exon-sc0000314-1510915933:140111..140458Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:140111..140458TCONS_00018969-exon-sc0000314-1575043694:140111..140458Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:140634..140674TCONS_00018969-exon-sc0000314-1491911889:140634..140674Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:140634..140674TCONS_00018969-exon-sc0000314-1510915933:140634..140674Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:140634..140674TCONS_00018969-exon-sc0000314-1575043694:140634..140674Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:142285..142366TCONS_00018969-exon-sc0000314-1491911889:142285..142366Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:142285..142366TCONS_00018969-exon-sc0000314-1510915933:142285..142366Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:142285..142366TCONS_00018969-exon-sc0000314-1575043694:142285..142366Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:147967..148054TCONS_00018969-exon-sc0000314-1491911889:147967..148054Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:147967..148054TCONS_00018969-exon-sc0000314-1510915933:147967..148054Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:147967..148054TCONS_00018969-exon-sc0000314-1575043694:147967..148054Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:148725..148778TCONS_00018969-exon-sc0000314-1491911889:148725..148778Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:148725..148778TCONS_00018969-exon-sc0000314-1510915933:148725..148778Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:148725..148778TCONS_00018969-exon-sc0000314-1575043694:148725..148778Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:149142..149222TCONS_00018969-exon-sc0000314-1491911889:149142..149222Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:149142..149222TCONS_00018969-exon-sc0000314-1510915933:149142..149222Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:149142..149222TCONS_00018969-exon-sc0000314-1575043694:149142..149222Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:149710..149758TCONS_00018969-exon-sc0000314-1491911889:149710..149758Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:149710..149758TCONS_00018969-exon-sc0000314-1510915933:149710..149758Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:149710..149758TCONS_00018969-exon-sc0000314-1575043694:149710..149758Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:150043..150125TCONS_00018969-exon-sc0000314-1491911889:150043..150125Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:150043..150125TCONS_00018969-exon-sc0000314-1510915933:150043..150125Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:150043..150125TCONS_00018969-exon-sc0000314-1575043694:150043..150125Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:150744..150816TCONS_00018969-exon-sc0000314-1491911889:150744..150816Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:150744..150816TCONS_00018969-exon-sc0000314-1510915933:150744..150816Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:150744..150816TCONS_00018969-exon-sc0000314-1575043694:150744..150816Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:151994..152077TCONS_00018969-exon-sc0000314-1491911889:151994..152077Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:151994..152077TCONS_00018969-exon-sc0000314-1510915933:151994..152077Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:151994..152077TCONS_00018969-exon-sc0000314-1575043694:151994..152077Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:152496..152534TCONS_00018969-exon-sc0000314-1491911889:152496..152534Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:152496..152534TCONS_00018969-exon-sc0000314-1510915933:152496..152534Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:152496..152534TCONS_00018969-exon-sc0000314-1575043694:152496..152534Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:153017..153043TCONS_00018969-exon-sc0000314-1491911889:153017..153043Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:153017..153043TCONS_00018969-exon-sc0000314-1510915933:153017..153043Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:153017..153043TCONS_00018969-exon-sc0000314-1575043694:153017..153043Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:153531..153758TCONS_00018969-exon-sc0000314-1491911889:153531..153758Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:153531..153758TCONS_00018969-exon-sc0000314-1510915933:153531..153758Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:153531..153758TCONS_00018969-exon-sc0000314-1575043694:153531..153758Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1491911889:153871..154137TCONS_00018969-exon-sc0000314-1491911889:153871..154137Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1510915933:153871..154137TCONS_00018969-exon-sc0000314-1510915933:153871..154137Clytia hemisphaericaexon
TCONS_00018969-exon-sc0000314-1575043694:153871..154137TCONS_00018969-exon-sc0000314-1575043694:153871..154137Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:140111..154137 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.323299	0.494234	0.602559	0	1.44635	1.95965	9.45928	19.0273	11.45	9.96988	18.5723	13.2796	2.15844	3.72266	11.0333	9.28854	14.7344	11.7629	1.3732	1.76326	21.5416	24.5802	62.8961	85.4933	58.3608	43.9516	108.404	101.706	32.6931	25.0274
Blast
[Close]
BLAST of TCONS_00018969 vs. Swiss-Prot (Human)
Match: MSI2H (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 8.306e-61
Identity = 110/227 (48.46%), Postives = 144/227 (63.44%), Query Frame = 2 
Query:  323 SNPMEANEGKMFIGGLHSQTSSDSLRAYFEKYGEVKEAVVMRDTVTKRSRGFGFIVFNDLTAVDKVLEFTDCHIIDGKKVDPKRAVPKKATPGANQPFRKVFVGGLPGDVTAAELQEYFEAFGKVTECLLMQDRQTKRLRGFGFVTFENEAASKAVCDAGFHKLKGKNVECKRAQPKEVMLLQG-KGRDLLVGVNLAPFQLNRSSI-YPNGIPTSPIAYGVPDYASS 997
            +N  + + GKMFIGGL  QTS DSLR YF K+GE++E +VMRD  TKRSRGFGF+ F D  +VDKVL     H +D K +DPK A P++A P      +K+FVGGL  +    ++++YFE FGKV + +LM D+ T R RGFGFVTFENE   + VC+  FH++  K VECK+AQPKEVM   G +GR   +   +  F L    + YPN + T     G P +A S
Sbjct:   13 ANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG-QPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVAT--YGRGYPGFAPS 236
The following BLAST results are available for this feature:
BLAST of TCONS_00018969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSI2H8.306e-6148.46RNA-binding protein Musashi homolog 2 OS=Homo sapi... [more]
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