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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018965 ID=TCONS_00018965|Name=TCONS_00018965|organism=Clytia hemisphaerica|type=transcript|length=2853bpRun BLAST on NCBI protein sequence of TCONS_00018965-protein >TCONS_00018965-protein ID=TCONS_00018965-protein|Name=TCONS_00018965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=867bp MQEEKETLNTKENETITGSTTKDDKNETISATEETPKQITNGNPSSGDSSRun BLAST on NCBI transcript from alignment at sc0000314:78929..89897+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018965 ID=TCONS_00018965|Name=TCONS_00018965|organism=Clytia hemisphaerica|type=transcript|length=10969bp|location=Sequence derived from alignment at sc0000314:78929..89897+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000314:78929..89897+ >TCONS_00018965 ID=TCONS_00018965|Name=TCONS_00018965|organism=Clytia hemisphaerica|type=CDS|length=28644bp|location=Sequence derived from alignment at sc0000314:78929..89897+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018965 vs. Swiss-Prot (Human)
Match: SETD6 (N-lysine methyltransferase SETD6 OS=Homo sapiens GN=SETD6 PE=1 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 2.198e-48 Identity = 110/302 (36.42%), Postives = 161/302 (53.31%), Query Frame = 3
Query: 633 LEAFLEWCTLNGLAMSNKV------------------------GVDYEGTSHRYGMKAKEDIRKGETLFKIPRKLLLDPDSGTLSAPLQEYDIWLQTIGRSLDESSGWVPLLITLMYEFKKDDSFWRPYLDLIPDTKGFGHPLFWKEEVIKRELSGMTLLYDLLEDRKNIEEEYKVFVLPFLLRNAELANRIETFDMNLFKRMIAFVMAYSFSEDQE---------SPSMIPMADMLNHHSNNNANLIFERNALKMISCRKIDKGEEIFNTFGKLGNPELLQMYGYTE--DDNSFDTFTIQV 1433
+ FL WC GL +S KV V +GT YGM A+E ++ GE LF +PR LL + ++ L+ + LQ+ SGWVPLL+ L++E + S WRPY L P+ HP+FW EE + L G + + +D NI EY+ VLPF+ + +L + + + L+ +++A VMAYSF E E SP M+P AD+LNH +N+NANL + N L+M++ + I KG EIFNT+G++ N +L+ MYG+ E DN+ DT IQ+
Sbjct: 22 VACFLSWCRRVGLELSPKVSERAGGRRTRGGARAALTSPPAQVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCSIGGLLERERVALQS-------QSGWVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFS-LRVRSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYPDNTDDTADIQM 315 The following BLAST results are available for this feature:
BLAST of TCONS_00018965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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