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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018962 ID=TCONS_00018962|Name=TCONS_00018962|organism=Clytia hemisphaerica|type=transcript|length=212bp
CGACACACCCGACAAATGAACCAATCACAACTGATTCAATGTTACCAAGT
GTCAATACTCAAAAGAGTCAAGGCTGACAACAATGTTAATGAAGGAAGAT
CGCAGCGGTAAATTTTCTCACCATGAAACAGAAAATGAACATTTCTATCG
AATAAAAATGATCAATAAAAAATGTGACATCAACCCTATGCCCTATAGTT
CCAGAGTTGTTC Run BLAST on NCBI transcript from alignment at sc0000314:21176..23514+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018962 ID=TCONS_00018962|Name=TCONS_00018962|organism=Clytia hemisphaerica|type=transcript|length=2339bp|location=Sequence derived from alignment at sc0000314:21176..23514+ (Clytia hemisphaerica)
CGACACACCCGACAAATGAACCAATCACAACTGATTCAATGTTACCAAGT
GTCAATACTCAAAAGAGTCAAGGTAAAAGGTCGTTTTTtacgagcacttt
ctgaaagtaactatttttattcaattgagcataacttttgagcTAATAGT
TTTAAACTTTCCACAAGCATTTCCGGAGTGCTCAGAGGCcactttcccga
tcgggaaactggtgaacttcccgatttggaaagtctagccatttcgggaa
gttttcaccttcccgttcgggaaatatttcccgttaaggtaATAGTTGCC
tttctatgtagtggttccgactCTCAAAGTGCACCCGGGCATTGCAGCAT
GTAGTGATTCAGTGTTGCTATATTGCGTATTTGTTAAGACACTAAATGTT
TATCGTAGAGGAAAAACTGTTTTCCTATATATTATCAAATATTATTGTCT
CCTAGCAATTTTCCACGAAATTGAAGGGGGGGGTTCTTATATATATTATC
AAATATTATTGTCTCCTAGCAATTTTCCACGAAATTGAAATATtgctatt
tttcttttgaacttCTAATTTATTGGTTTCTTAACAAATATACCTGAAGG
CCAGGTAgcgtggtagagcattcgcctatTAATCTTAGAGTGTGTGGCTC
CGCTCCCCGGTCGGGGTATAGTCAGCGAATAAGTAGCATAGACTAGGTAA
TCTGTCCTATGCGGTAAGTAACTGGTAACTGAAAATATGAGTGGCGCTCA
ACAGTCCAGCATTCGAGCTCTTAGGTCTAGGGCAAATAGAAAAAGGGGTA
GACTCCCTCAATATCGGCTCCATAAACAGCCACCAAATAAACATACTTAC
TAACTGTCGGCAAAATCAACCATTGGACCGTGATAATTTAGAgagacaaa
attgcaaaaaaatggcccttagagagacattttcacaaaatttcttccaa
tcttcaaaagaattctccaataattttgaaaaatgttcttactttcTTGA
CTTTTGCACTCTTCTTTGACTTGAGTTTGTGgaaaacccgacccttagag
agactaatttaagactttctgatttttgcagcccttagagagactttgaa
aggtgaaaataCCGACCCTTACTAGTCTGCAcctacccagcacccatttt
tgcctaagtaccccccgggcTATACAGTTAAATATTGTTTTGACTTGATT
GGTTTGAACTTTGCACTTTAATTCTACAATATATCCGCATTTAAGGTAAC
ACGAAAGTACGTTGCTGTAGCACGTATCATGAAAgcttgttttctccttt
ttagtagTAAGGGTctgagggtcgaaagtcgggcggcacccccgaccccg
tcagcttgcaaccctaATACACCCTCCTCGGGAGTTGAACAATAACATTT
CCCGCAGcagattttgaaaacaaaggaGTGAgtttattgttttaaattga
TAGTCGGTCTGAAATGAAAGTTCTTCTacgaaatttccataattattaTG
CAACTGttgatgaaaaatatcaaaaccgtCCGCAGCAGTAAGGGCTTTTT
AGAGTGCAAAGCTTGGAGTAATCAAAATCTGCTCAGGCtttaaaattttc
gattttcaaaaatcgggcgactaaacgatttttttataagaaagactATA
TAAGATCTGAAGACTTCAATggtaaaaatattaagaaccaattacatcca
atttcttaggaaattgcataAAAATGCTCGCAAAATTGAATACCCTGAGT
AACTTCACAAGActgtaaaacattttttgaaaattacaatttCATTCAGC
ATCATAACCTATAACAGAGGACGAACATCTCAACCTAAAAATAATAGCCT
TTTCAAGGAACCTTAGAGAGTGACTGTGCTTATTTTTCCCCCTTTTTATG
CAAAGTTTTTCCTATAATGTACTATACTATActtttctacacgttttttt
ataagaacagactatataagaatataaagtCTTTGATGGCCAcaatatta
aaaacaagttaagaacataaggctttacCATGGACTTTGCATGAAAATAG
TTGCAAAATGATGggattaagaaaattttaagacaATTCTGaggtttaaa
attcaaaaagttacgaacattcgaaggtttcaaaattttgaatgctctta
ttaaaaaaatgttcaatccaaatttttattttttccatgtCTTTTTTAGG
CTGACAACAATGTTAATGAAGGAAGATCGCAGCGGTAAATTTTCTCACCA
TGAAACAGAAAATGAACATTTCTATCGAATAAAAATGATCAATAAAAAAT
GTGACATCAACCCTATGCCCTATAGTTCCAGAGTTGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018962-exon-sc0000314-1491911889:21176..21247 | TCONS_00018962-exon-sc0000314-1491911889:21176..21247 | Clytia hemisphaerica | exon |
| TCONS_00018962-exon-sc0000314-1510915933:21176..21247 | TCONS_00018962-exon-sc0000314-1510915933:21176..21247 | Clytia hemisphaerica | exon |
| TCONS_00018962-exon-sc0000314-1575043694:21176..21247 | TCONS_00018962-exon-sc0000314-1575043694:21176..21247 | Clytia hemisphaerica | exon |
| TCONS_00018962-exon-sc0000314-1491911889:23375..23514 | TCONS_00018962-exon-sc0000314-1491911889:23375..23514 | Clytia hemisphaerica | exon |
| TCONS_00018962-exon-sc0000314-1510915933:23375..23514 | TCONS_00018962-exon-sc0000314-1510915933:23375..23514 | Clytia hemisphaerica | exon |
| TCONS_00018962-exon-sc0000314-1575043694:23375..23514 | TCONS_00018962-exon-sc0000314-1575043694:23375..23514 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000314 | supercontig | sc0000314:21176..23514 + |
Blast
The following BLAST results are available for this feature:
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