TCONS_00018960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018960
Unique NameTCONS_00018960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018960 ID=TCONS_00018960|Name=TCONS_00018960|organism=Clytia hemisphaerica|type=transcript|length=219bp
ATAGGGGTATCGTGCGGTACTGATAACATGTTATACAAAAATAATAGAAT
GGAATCCAAAAGAGAGAGCGGTTCTGCACATGTCAATCAGGAGTGAAAta
ttataaaattcaaaataatttaaaaaatttgaaaaatgaagaaaaaatca
GCTTCTCATAAAATTGTGTTATAACCACCATTTTCATATAtcagaaaaac
ttcaatctttgTAAAAAGA
Run BLAST on NCBI

transcript from alignment at sc0000313:272403..272621

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018960 ID=TCONS_00018960|Name=TCONS_00018960|organism=Clytia hemisphaerica|type=transcript|length=219bp|location=Sequence derived from alignment at sc0000313:272403..272621 (Clytia hemisphaerica)
TCTTTTTAcaaagattgaagtttttctgaTATATGAAAATGGTGGTTATA
ACACAATTTTATGAGAAGCtgattttttcttcatttttcaaattttttaa
attattttgaattttataataTTTCACTCCTGATTGACATGTGCAGAACC
GCTCTCTCTTTTGGATTCCATTCTATTATTTTTGTATAACATGTTATCAG
TACCGCACGATACCCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010630XLOC_010630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018960-exon-sc0000313-1491911889:272403..272621TCONS_00018960-exon-sc0000313-1491911889:272403..272621Clytia hemisphaericaexon
TCONS_00018960-exon-sc0000313-1510915933:272403..272621TCONS_00018960-exon-sc0000313-1510915933:272403..272621Clytia hemisphaericaexon
TCONS_00018960-exon-sc0000313-1575043694:272403..272621TCONS_00018960-exon-sc0000313-1575043694:272403..272621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:272403..272621 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.02603	4.90117	2.84536	0	25.4171	17.4069	9.69263	16.6359	5.29417	6.55769	5.09204	1.67365	1.67133	3.47138	3.56743	6.89112	0.943255	1.93361	0	2.79542	2.42972	0	14.4069	17.0273	1.34906	7.224	3.44584	1.83875	9.76237	4.26271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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