TCONS_00018954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018954
Unique NameTCONS_00018954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018954 ID=TCONS_00018954|Name=TCONS_00018954|organism=Clytia hemisphaerica|type=transcript|length=172bp
ttctaggttaaattaaaaaaagaaaataataaattaatatAAACAAAATG
CCACCGACGATACAGAACTCAgggacaaagaaaaaagagtaaGCTACGAG
ACTTTTTTCCTTTTATATATAGCAAACTTGTATTCTAGCTTCAATTTTTC
CCATACTCTAAAGGCCGCTAAa
Run BLAST on NCBI

transcript from alignment at sc0000313:145742..145913

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018954 ID=TCONS_00018954|Name=TCONS_00018954|organism=Clytia hemisphaerica|type=transcript|length=172bp|location=Sequence derived from alignment at sc0000313:145742..145913 (Clytia hemisphaerica)
tTTAGCGGCCTTTAGAGTATGGGAAAAATTGAAGCTAGAATACAAGTTTG
CTATATATAAAAGGAAAAAAGTCTCGTAGCttactcttttttctttgtcc
cTGAGTTCTGTATCGTCGGTGGCATTTTGTTTatattaatttattatttt
ctttttttaatttaacctagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010624XLOC_010624Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018954-exon-sc0000313-1491911889:145742..145913TCONS_00018954-exon-sc0000313-1491911889:145742..145913Clytia hemisphaericaexon
TCONS_00018954-exon-sc0000313-1510915933:145742..145913TCONS_00018954-exon-sc0000313-1510915933:145742..145913Clytia hemisphaericaexon
TCONS_00018954-exon-sc0000313-1575043694:145742..145913TCONS_00018954-exon-sc0000313-1575043694:145742..145913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:145742..145913 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top