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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018919 ID=TCONS_00018919|Name=TCONS_00018919|organism=Clytia hemisphaerica|type=transcript|length=1786bpRun BLAST on NCBI protein sequence of TCONS_00018919-protein >TCONS_00018919-protein ID=TCONS_00018919-protein|Name=TCONS_00018919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp MVFVVGVGLTKFSKPHARKWDYPDIGREAASNALNDAGIDYSQIDAAVVSRun BLAST on NCBI transcript from alignment at sc0000313:172675..185184+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018919 ID=TCONS_00018919|Name=TCONS_00018919|organism=Clytia hemisphaerica|type=transcript|length=12510bp|location=Sequence derived from alignment at sc0000313:172675..185184+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000313:172675..185184+ >TCONS_00018919 ID=TCONS_00018919|Name=TCONS_00018919|organism=Clytia hemisphaerica|type=CDS|length=12300bp|location=Sequence derived from alignment at sc0000313:172675..185184+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018919 vs. Swiss-Prot (Human)
Match: NLTP (Non-specific lipid-transfer protein OS=Homo sapiens GN=SCP2 PE=1 SV=2) HSP 1 Score: 363.614 bits (932), Expect = 2.184e-117 Identity = 205/413 (49.64%), Postives = 270/413 (65.38%), Query Frame = 3
Query: 54 KMVFVVGVGLTKFSKPHARK-WDYPDIGREAASNALNDAGIDYSQIDAAVVSHVYGESTS-------ELGLTGIPIFNTXXXXXXXXXXLMLSRLLVMSGEYSCVLALGFEKMDSG-LTVKWDDRIHPSQRHFDRM-EECGVPKGSVTPTLSHFTSEVMKIYAYSAREHEKRYGTTKEHSAKIAYKNHFHSQYNPNASLQKVLPM-EAINAREIVYPLTLAMCALTADGGAAAVVCNKDFMIKHKLQNKAVEIIAQQMTTDLPSSFN-TDVTNVGGLEMARQAANYCYEKSGYTARDVDVIELHDCFAPTELLLYEALGLCETGKAGELIDNAKWIENKQGGKLCQLGNKWVVNTDGGLESKGHPIGATGIAQCAEIVYQLRGEAGKRQVEGAQIGLQHNFGIGGAAVVTMYR 1256
+ VFVVGVG+TKF KP A DYPD+ EA AL DA I YS +D A V +V+G+ST LG+TGIPI N NNNC++ S AL ++R L+ G CVLALGFEKM G L +K+ DR P+ +H D + + G+ V P +++ Y+ +EH ++YGT EH AKI +KNH HS NP + Q + E + ++E+ LT+ C T+DG AAA++ ++ F+ K+ LQ+KAVEI+AQ+M TDLPSSF + + G +M+++AA CYEKSG T D+DVIELHDCF+ ELL YEALGLC G+ L+D +N GGK WV+N GGL SKGHP+GATG+AQCAE+ +QLRGEAGKRQV GA++ LQHN GIGGA VVT+Y+
Sbjct: 12 RRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQACVGYVFGDSTCGQRAIYHSLGMTGIPIINVNNNCATGSTALFMARQLIQGGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAP----------QMFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRG---DNTYGGK-------WVINPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYK 404 The following BLAST results are available for this feature:
BLAST of TCONS_00018919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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