TCONS_00018917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018917
Unique NameTCONS_00018917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018917 ID=TCONS_00018917|Name=TCONS_00018917|organism=Clytia hemisphaerica|type=transcript|length=1852bp
CgaacatcattttcaaaaaaaattgttttgctgttgttGTGTGGTCAGTA
GCAGTTCGCGTGGTTGGACTCTTCAACTCTTTTCTGCTGGAACTCCTCCA
CTTCTTCgccaaaaattttagattacaAACGATCCATGGGCTCTAAAATT
TCCACAACCGAAGCGAAAAACAATCAACAACTGCAAATCCAAAAATCTAA
CAAGCAACAAAGAAAGATTAAACGCAAATTCAAGAATTTATCATCAGCAG
AACACCAATTCTCCCTAGCCAATACAACGCCAGAATGGAAAATGCCTGAA
GTCAAAAGGAAATGTTTACAGTTGATGACTCCTTCAACTTCAAATTCATC
TACAGCTTGTAAACTTTTCAGTAACATGCTTTCAATCAAAACACTACAAC
AATCAGAACGAGGATCTTATTTGGCAgctttttttcgactttttgATGAC
GATTTCATTCAAGACTTTCTATGGTTGGATAGATGTTTTACCCTTTGCGA
TAAGTATCTGCTGGCGATGATTTACGTTTATTTTCGCAGAGCCAAACTAA
CAAGAAAGGATTTTACacgtcaaaatttctttcttgcACTGTATATTGCT
CATGAAATAGAAGAGGACGATGAAGAATTAAAAATGGAGATTTATCCATG
GGCTCTTGGTTCAGAGTTGTGGAGAAGCAAACTTAAAGAGTTTCTATATA
AGAGGAACGTGTTTTTACAACGAATGAAGTTTCGTGCTGTCGTCAGTAGA
ACAACCTGTGATGAGatattcGATTTATTTCCAAAACATCCAGCCTGGCA
ACGTGAGAGAAACGGAAATCATGGGGGTGCCATTCGATTCTATAATCAAA
ATTTGGAGAATGAAGTTTTCAGTCCATCAAGAAATCAAATGAGGTGTAAA
GTATGCCTTAATGGGAAATCACCCATCCGAATCTCGCATAACACATTTAT
AAAAGCATATCCAGCAAATAAGAACGACATTTACTTCAAGAACTCTTCAG
TTGAGATCACACTTGACGACGATCACGAAGAATAATATGCGATCGAACGT
TAACGAACAGCACCTTATTTCAtatattcatattggaagttctAAGAGCA
TCCACATCATCTACGTTCCAAGATATTTATTCGAACTCTTCTAAAACGCT
CATGACAAGCAGTAAATTTAAGCTGACGCCAGCCAAATGCGTCAAGAACC
TGTCAGTTGGTTAAGTGACTTGTCGAAGACATGAGTGACACTACGATATT
TATTTTTCGAGCACATAGTCGCGAATACTTTACCTTCCTTCTGAGTTTAG
GGAATCTTGGAATAGATGACCGGGGTATACCTGAGAAGAATAAGTACCAG
GTATGTGAGCGCATGTAAAGAGGCAAGTGCCGTAAAACCAGAGAAATCGT
tgatatcccccgtcaacgcatCTATCAGTTTATTAATAGCGTAAGGGGTC
AGATAAGCCCTGTGTTTGAGAGTGGGTGTCAAGGGTAACTTCATCTCAAT
TTTTCCCCTGTAAGTTCCGATTCTCCATTCTGGGTGGGGCATACCTGCCA
ATTTGCAAACCAGTTCCCCTAGGGTAATAATTTTTGCTTGAATAATTTGG
ATTacagaaatttaatttattacTTTCTTGATGATCGAATGTAAATAGAA
ATTCAATTCTCTTGGAATCTttttatgaaatcaaactaTTGATGATTTAA
TTCTTAATTGAACCAGATTGAACCATTAAACCAAGAAGccaatataaata
aaaatttgccgCCTTTTTTGCTACGGTACTCCATTTTTTCCGTCCCACTC
GAAAACATACGGGCTCGCTTGTTCTCGGAATGTCAAGGGGCCTGGAAATC
AG
Run BLAST on NCBI

protein sequence of TCONS_00018917-protein

>TCONS_00018917-protein ID=TCONS_00018917-protein|Name=TCONS_00018917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MGSKISTTEAKNNQQLQIQKSNKQQRKIKRKFKNLSSAEHQFSLANTTPE
WKMPEVKRKCLQLMTPSTSNSSTACKLFSNMLSIKTLQQSERGSYLAAFF
RLFDDDFIQDFLWLDRCFTLCDKYLLAMIYVYFRRAKLTRKDFTRQNFFL
ALYIAHEIEEDDEELKMEIYPWALGSELWRSKLKEFLYKRNVFLQRMKFR
AVVSRTTCDEIFDLFPKHPAWQRERNGNHGGAIRFYNQNLENEVFSPSRN
QMRCKVCLNGKSPIRISHNTFIKAYPANKNDIYFKNSSVEITLDDDHEE
Run BLAST on NCBI

transcript from alignment at sc0000313:163358..167410+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018917 ID=TCONS_00018917|Name=TCONS_00018917|organism=Clytia hemisphaerica|type=transcript|length=4053bp|location=Sequence derived from alignment at sc0000313:163358..167410+ (Clytia hemisphaerica)
CgaacatcattttcaaaaaaaattgttttgctgttgttGTGTGGTCAGTA
GCAGTTCGCGTGGTTGGACTCTTCAACTCTTTTCTGCTGGAACTCCTCCA
CTTCTTCgccaaaaattttagattacaAACGATCCATGGGCTCTAAAATT
TCCACAACCGAAGCGAAAAACAATCAACAACTGCAAATCCAAAAATCTAA
CAAGCAACAAAGAAAGATTAAACGCAAATTCAAGAATTTATCATCAGCAG
AACACCAATTCTCCCTAGCCAATACAACGCCAGAATGGAAAATGCCTGAA
GTCAAAAGGAAATGTTTACAGTTGATGACTCCTTCAACTTCAAATTCATC
TACAGCTTGTAAACTTTTCAGTAACATGCTTTCAATCAAAACACTACAAC
AATCAGAACGAGGATCTTATTTGGCAgctttttttcgactttttggtAAA
GATGCTcccttgaaattttgcattCAAGTCATTCAAGTGTGGTGGAGGGG
GTTGTTAAACAGTCACAAAGTCACAAAGTCTAACTTTTCAAATATGTTGC
TCTAAAAAGGGTcacttttatcgcaaaaattcggTTTATTTACAGTATTC
AAGAGCCAAGTTTATGGTCCAGGCCACACCCCAAACACAAAATTCCCCAA
GCCTATATAGTTTTCTAACTTTTCTGGCAGTCTGGAGATCAAATGATTTA
GGTGTTTTTCTTCTCACAATTTTTACAAGCAGTTCTTCTTTCAATGTTTT
AGATGACGATTTCATTCAAGACTTTCTATGGTTGGATAGATGTTTTACCC
TTTGCGATAAGGTACTAGTATGTAGTATGTTGCAATTATTGTTGTGTCgt
tttatataatataaaatcGGAGATGTGAAATTTTTAAACATAAATACTAA
TTGGATAATCCCCTCAAGGGTCTACAGTCaaggaaatccctcaattgcgg
tagttgAATTTTCATTGGGAAATCATTTTACCAAAATTGAGAGGCAATCT
TGAAAGGAATACCGTACAAAACCTGAAATTCAGAACATGAACAcaaaatt
gaaacatgaatACTCTAAGGTCGTAAACTAAAGTAAAGTTGTTCCCTAAA
ACCCTGAAATATACTTGTTTAAGGCAATCTAAAGGggcaaaaatcaagaa
aaattgtCCCAATGGTGCCCCACACTCTCAATGTAAAGCTGCAGCGTAGG
AATCACGTTGCAGAGTTCTTCATCGTCTTTGACTCCCGTGTAGGAATCAG
CTTGATTCCCTGTATTACAATGATTCACTTTATAAAGGAGCCTTTGCTCA
AAGTAAACGACTCAGGTAGCTCAAATGAGGGGAATGGTGTACGTGTACca
ccatACTTCTGTTCTAAAACATTATCAAGGCCTTAAAATTCGATGGACCA
CTTTAGACAATTTAGAATTAATCACAATCTTATTTTATAGTATCTGCTGG
CGATGATTTACGTTTATTTTCGCAGAGCCAAACTAACAAGAAAGGATTTT
ACacgtcaaaatttctttcttgcACTGTAAGTCTTTCTTGGCACTTTGGT
TTTATCGTTGATATGATCGCAGAAATagactgaaatttcattaattgaCC
AGGATTTTAGCTTCATGGCAAACGGGATGCTACATTTAAATTGACTGACT
GTTGTAAAGTTTACTGTTTAAGAATCCACTGGGggctttcaaaaaattta
tccatAGTAGAAATttcgtgaatttcgaaaaaaattgcgtggttgcgtga
attgagggtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggg
ggggggggggtggctCATCCACTGTATATAAGGTACACATATGATGGACA
TTCTCGAACCCAGAGCCGCCACTGATTTTTCTGATATATGTTAGTACact
atcaaaatcataaaaagcgaACCAAGTGACTGACGTGAGTTCGAGTTTTG
GACTTTCATACTACAGGAGGAAGAAATCTTAGTTGGTGGGGGAAAACTTG
GTcacttttatgaaaatatttgtcaCTTCTCTCTTGAAGTTGATGACTAA
TTTGTCACTTCTCTCCCGaccaatttttcctctttaagGTATCACAAAAC
TGCATATTTCAGGTATATTGCTCATGAAATAGAAGAGGACGATGAAGAAT
TAAAAATGGAGATTTATCCATGGGCTCTTGGTTCAGAGTTGTGGAGAAGC
AAACTTAAAGAGTTTCTATATAAGAGGAACGTGTTTTTACAACGAATGAA
GTTTCGTGCTGTCGTCAGTAGAACAACCTGTGATGAGGTtcgtttttatg
attttgagctTCAAAATTACTTTAAACGCTTTCTTAGTAACATCagatat
aaaatttttcttactaAGCGGTGTCAGTATGAATAAAttaccgatttttt
tctggtcTTATGTCTGTGATCTATTTCCTTTTAACATCCCATGTTTTTAA
GTATCTTTACCAGGTCTTTGTTATTCATGTTTAAAACTATATACGATAGT
TATCAGAGTGAAGCAGAATGAACTTTACAGAAAGTCTTCCATGGTCGTTT
TATTTGGTTCCCAATAAGGATTGTTTGATAGCTTTGTTATCTACATTGTC
CTTGTAACTTCAcatatttttcagatattcGATTTATTTCCAAAACATCC
AGCCTGGCAACGTGAGAGAAACGGAAATCATGGGGGTGCCATTCGATTCT
ATAATCAAAATTTGGAGAATGAAGTTTTCAGTCCATCAAGAAATCAAATG
AGGTGTAAAGTATGCCTTAATGGGAAATCACCCATCCGAATCTCGCATAA
CACATTTATAAAAGGTATTTAACGTGATAAATTCTCTCAGAAATGATGAT
TACATCACGTCATTACATCAACGCCATTAGATGAGACCAGCCTTGCGTTG
ACGTTAAACAAAAGAGCGTTACCAGACTGTTGTCCATCCTCTAGCGTATC
TAGACAAAAAAATTGCATCTTAAGACTGTTTTACGCTTTCTTATGAATCT
ATTttcttcattaatttttttgatcaaTTTGATTAGATTGATCAATTAAT
TTTCAGCATATCCAGCAAATAAGAACGACATTTACTTCAAGAACTCTTCA
GTTGAGATCACACTTGACGACGATCACGAAGAATAATATGCGATCGAACG
TTAACGAACAGCACCTTATTTCAtatattcatattggaagttctAAGAGC
ATCCACATCATCTACGTTCCAAGATATTTATTCGAACTCTTCTAAAACGC
TCATGACAAGCAGTAAATTTAAGCTGACGCCAGCCAAATGCGTCAAGAAC
CTGTCAGTTGGTTAAGTGACTTGTCGAAGACATGAGTGACACTACGATAT
TTATTTTTCGAGCACATAGTCGCGAATACTTTACCTTCCTTCTGAGTTTA
GGGAATCTTGGAATAGATGACCGGGGTATACCTGAGAAGAATAAGTACCA
GGTATGTGAGCGCATGTAAAGAGGCAAGTGCCGTAAAACCAGAGAAATCG
TtgatatcccccgtcaacgcatCTATCAGTTTATTAATAGCGTAAGGGGT
CAGATAAGCCCTGTGTTTGAGAGTGGGTGTCAAGGGTAACTTCATCTCAA
TTTTTCCCCTGTAAGTTCCGATTCTCCATTCTGGGTGGGGCATACCTGCC
AATTTGCAAACCAGTTCCCCTAGGGTAATAATTTTTGCTTGAATAATTTG
GATTacagaaatttaatttattacTTTCTTGATGATCGAATGTAAATAGA
AATTCAATTCTCTTGGAATCTttttatgaaatcaaactaTTGATGATTTA
ATTCTTAATTGAACCAGATTGAACCATTAAACCAAGAAGccaatataaat
aaaaatttgccgCCTTTTTTGCTACGGTACTCCATTTTTTCCGTCCCACT
CGAAAACATACGGGCTCGCTTGTTCTCGGAATGTCAAGGGGCCTGGAAAT
CAG

Coding sequence (CDS) from alignment at sc0000313:163358..167410+

>TCONS_00018917 ID=TCONS_00018917|Name=TCONS_00018917|organism=Clytia hemisphaerica|type=CDS|length=5400bp|location=Sequence derived from alignment at sc0000313:163358..167410+ (Clytia hemisphaerica)
ATGGGCTCTAAAATTTCCACAACCGAAGCGAAAAACAATCAACAACTGCA
AATCCAAAAATCTAACAAGCAACAAAGAAAGATTAAACGCAAATTCAAGA
ATTTATCATCAGCAGAACACCAATTCTCCCTAGCCAATACAACGCCAGAA
TGGAAAATGCCTGAAGTCAAAAGGAAATGTTTACAGTTGATGACTCCTTC
AACTTCAAATTCATCTACAGCTTGTAAACTTTTCAGTAACATGCTTTCAA
TCAAAACACTACAACAATCAGAACGAGGATCTTATTTGGCAgcttttttt
cgactttttgATGACGATTTCATTCAAGACTTTCTATGGTTGGATAGATG
TTTTACCCTTTGCGATAAGTATCTGCTGGCGATGATTTACGTTTATTTTC
GCAGAGCCAAACTAACAAGAAAGGATTTTACacgtcaaaatttctttctt
gcACTGTATATTGCTCATGAAATAGAAGAGGACGATGAAGAATTAAAAAT
GGAGATTTATCCATGGGCTCTTGGTTCAGAGTTGTGGAGAAGCAAACTTA
AAGAGTTTCTATATAAGAGGAACGTGTTTTTACAACGAATGAAGTTTCGT
GCTGTCGTCAGTAGAACAACCTGTGATGAGatattcGATTTATTTCCAAA
ACATCCAGCCTGGCAACGTGAGAGAAACGGAAATCATGGGGGTGCCATTC
GATTCTATAATCAAAATTTGGAGAATGAAGTTTTCAGTCCATCAAGAAAT
CAAATGAGGTGTAAAGTATGCCTTAATGGGAAATCACCCATCCGAATCTC
GCATAACACATTTATAAAAGCATATCCAGCAAATAAGAACGACATTTACT
TCAAGAACTCTTCAGTTGAGATCACACTTGACGACGATCACGAAGAATAA
ATGGGCTCTAAAATTTCCACAACCGAAGCGAAAAACAATCAACAACTGCA
AATCCAAAAATCTAACAAGCAACAAAGAAAGATTAAACGCAAATTCAAGA
ATTTATCATCAGCAGAACACCAATTCTCCCTAGCCAATACAACGCCAGAA
TGGAAAATGCCTGAAGTCAAAAGGAAATGTTTACAGTTGATGACTCCTTC
AACTTCAAATTCATCTACAGCTTGTAAACTTTTCAGTAACATGCTTTCAA
TCAAAACACTACAACAATCAGAACGAGGATCTTATTTGGCAgcttttttt
cgactttttgATGACGATTTCATTCAAGACTTTCTATGGTTGGATAGATG
TTTTACCCTTTGCGATAAGTATCTGCTGGCGATGATTTACGTTTATTTTC
GCAGAGCCAAACTAACAAGAAAGGATTTTACacgtcaaaatttctttctt
gcACTGTATATTGCTCATGAAATAGAAGAGGACGATGAAGAATTAAAAAT
GGAGATTTATCCATGGGCTCTTGGTTCAGAGTTGTGGAGAAGCAAACTTA
AAGAGTTTCTATATAAGAGGAACGTGTTTTTACAACGAATGAAGTTTCGT
GCTGTCGTCAGTAGAACAACCTGTGATGAGatattcGATTTATTTCCAAA
ACATCCAGCCTGGCAACGTGAGAGAAACGGAAATCATGGGGGTGCCATTC
GATTCTATAATCAAAATTTGGAGAATGAAGTTTTCAGTCCATCAAGAAAT
CAAATGAGGTGTAAAGTATGCCTTAATGGGAAATCACCCATCCGAATCTC
GCATAACACATTTATAAAAGCATATCCAGCAAATAAGAACGACATTTACT
TCAAGAACTCTTCAGTTGAGATCACACTTGACGACGATCACGAAGAATAA
ATGGGCTCTAAAATTTCCACAACCGAAGCGAAAAACAATCAACAACTGCA
AATCCAAAAATCTAACAAGCAACAAAGAAAGATTAAACGCAAATTCAAGA
ATTTATCATCAGCAGAACACCAATTCTCCCTAGCCAATACAACGCCAGAA
TGGAAAATGCCTGAAGTCAAAAGGAAATGTTTACAGTTGATGACTCCTTC
AACTTCAAATTCATCTACAGCTTGTAAACTTTTCAGTAACATGCTTTCAA
TCAAAACACTACAACAATCAGAACGAGGATCTTATTTGGCAgcttttttt
cgactttttgATGACGATTTCATTCAAGACTTTCTATGGTTGGATAGATG
TTTTACCCTTTGCGATAAGTATCTGCTGGCGATGATTTACGTTTATTTTC
GCAGAGCCAAACTAACAAGAAAGGATTTTACacgtcaaaatttctttctt
gcACTGTATATTGCTCATGAAATAGAAGAGGACGATGAAGAATTAAAAAT
GGAGATTTATCCATGGGCTCTTGGTTCAGAGTTGTGGAGAAGCAAACTTA
AAGAGTTTCTATATAAGAGGAACGTGTTTTTACAACGAATGAAGTTTCGT
GCTGTCGTCAGTAGAACAACCTGTGATGAGatattcGATTTATTTCCAAA
ACATCCAGCCTGGCAACGTGAGAGAAACGGAAATCATGGGGGTGCCATTC
GATTCTATAATCAAAATTTGGAGAATGAAGTTTTCAGTCCATCAAGAAAT
CAAATGAGGTGTAAAGTATGCCTTAATGGGAAATCACCCATCCGAATCTC
GCATAACACATTTATAAAAGCATATCCAGCAAATAAGAACGACATTTACT
TCAAGAACTCTTCAGTTGAGATCACACTTGACGACGATCACGAAGAATAA
ATGGGCTCTAAAATTTCCACAACCGAAGCGAAAAACAATCAACAACTGCA
AATCCAAAAATCTAACAAGCAACAAAGAAAGATTAAACGCAAATTCAAGA
ATTTATCATCAGCAGAACACCAATTCTCCCTAGCCAATACAACGCCAGAA
TGGAAAATGCCTGAAGTCAAAAGGAAATGTTTACAGTTGATGACTCCTTC
AACTTCAAATTCATCTACAGCTTGTAAACTTTTCAGTAACATGCTTTCAA
TCAAAACACTACAACAATCAGAACGAGGATCTTATTTGGCAgcttttttt
cgactttttgATGACGATTTCATTCAAGACTTTCTATGGTTGGATAGATG
TTTTACCCTTTGCGATAAGTATCTGCTGGCGATGATTTACGTTTATTTTC
GCAGAGCCAAACTAACAAGAAAGGATTTTACacgtcaaaatttctttctt
gcACTGTATATTGCTCATGAAATAGAAGAGGACGATGAAGAATTAAAAAT
GGAGATTTATCCATGGGCTCTTGGTTCAGAGTTGTGGAGAAGCAAACTTA
AAGAGTTTCTATATAAGAGGAACGTGTTTTTACAACGAATGAAGTTTCGT
GCTGTCGTCAGTAGAACAACCTGTGATGAGatattcGATTTATTTCCAAA
ACATCCAGCCTGGCAACGTGAGAGAAACGGAAATCATGGGGGTGCCATTC
GATTCTATAATCAAAATTTGGAGAATGAAGTTTTCAGTCCATCAAGAAAT
CAAATGAGGTGTAAAGTATGCCTTAATGGGAAATCACCCATCCGAATCTC
GCATAACACATTTATAAAAGCATATCCAGCAAATAAGAACGACATTTACT
TCAAGAACTCTTCAGTTGAGATCACACTTGACGACGATCACGAAGAATAA
ATGGGCTCTAAAATTTCCACAACCGAAGCGAAAAACAATCAACAACTGCA
AATCCAAAAATCTAACAAGCAACAAAGAAAGATTAAACGCAAATTCAAGA
ATTTATCATCAGCAGAACACCAATTCTCCCTAGCCAATACAACGCCAGAA
TGGAAAATGCCTGAAGTCAAAAGGAAATGTTTACAGTTGATGACTCCTTC
AACTTCAAATTCATCTACAGCTTGTAAACTTTTCAGTAACATGCTTTCAA
TCAAAACACTACAACAATCAGAACGAGGATCTTATTTGGCAgcttttttt
cgactttttgATGACGATTTCATTCAAGACTTTCTATGGTTGGATAGATG
TTTTACCCTTTGCGATAAGTATCTGCTGGCGATGATTTACGTTTATTTTC
GCAGAGCCAAACTAACAAGAAAGGATTTTACacgtcaaaatttctttctt
gcACTGTATATTGCTCATGAAATAGAAGAGGACGATGAAGAATTAAAAAT
GGAGATTTATCCATGGGCTCTTGGTTCAGAGTTGTGGAGAAGCAAACTTA
AAGAGTTTCTATATAAGAGGAACGTGTTTTTACAACGAATGAAGTTTCGT
GCTGTCGTCAGTAGAACAACCTGTGATGAGatattcGATTTATTTCCAAA
ACATCCAGCCTGGCAACGTGAGAGAAACGGAAATCATGGGGGTGCCATTC
GATTCTATAATCAAAATTTGGAGAATGAAGTTTTCAGTCCATCAAGAAAT
CAAATGAGGTGTAAAGTATGCCTTAATGGGAAATCACCCATCCGAATCTC
GCATAACACATTTATAAAAGCATATCCAGCAAATAAGAACGACATTTACT
TCAAGAACTCTTCAGTTGAGATCACACTTGACGACGATCACGAAGAATAA
ATGGGCTCTAAAATTTCCACAACCGAAGCGAAAAACAATCAACAACTGCA
AATCCAAAAATCTAACAAGCAACAAAGAAAGATTAAACGCAAATTCAAGA
ATTTATCATCAGCAGAACACCAATTCTCCCTAGCCAATACAACGCCAGAA
TGGAAAATGCCTGAAGTCAAAAGGAAATGTTTACAGTTGATGACTCCTTC
AACTTCAAATTCATCTACAGCTTGTAAACTTTTCAGTAACATGCTTTCAA
TCAAAACACTACAACAATCAGAACGAGGATCTTATTTGGCAgcttttttt
cgactttttgATGACGATTTCATTCAAGACTTTCTATGGTTGGATAGATG
TTTTACCCTTTGCGATAAGTATCTGCTGGCGATGATTTACGTTTATTTTC
GCAGAGCCAAACTAACAAGAAAGGATTTTACacgtcaaaatttctttctt
gcACTGTATATTGCTCATGAAATAGAAGAGGACGATGAAGAATTAAAAAT
GGAGATTTATCCATGGGCTCTTGGTTCAGAGTTGTGGAGAAGCAAACTTA
AAGAGTTTCTATATAAGAGGAACGTGTTTTTACAACGAATGAAGTTTCGT
GCTGTCGTCAGTAGAACAACCTGTGATGAGatattcGATTTATTTCCAAA
ACATCCAGCCTGGCAACGTGAGAGAAACGGAAATCATGGGGGTGCCATTC
GATTCTATAATCAAAATTTGGAGAATGAAGTTTTCAGTCCATCAAGAAAT
CAAATGAGGTGTAAAGTATGCCTTAATGGGAAATCACCCATCCGAATCTC
GCATAACACATTTATAAAAGCATATCCAGCAAATAAGAACGACATTTACT
TCAAGAACTCTTCAGTTGAGATCACACTTGACGACGATCACGAAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010604XLOC_010604Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018917-proteinTCONS_00018917-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018917-exon-sc0000313-1491911889:163358..163802TCONS_00018917-exon-sc0000313-1491911889:163358..163802Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1510915933:163358..163802TCONS_00018917-exon-sc0000313-1510915933:163358..163802Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1575043694:163358..163802TCONS_00018917-exon-sc0000313-1575043694:163358..163802Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1491911889:164110..164168TCONS_00018917-exon-sc0000313-1491911889:164110..164168Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1510915933:164110..164168TCONS_00018917-exon-sc0000313-1510915933:164110..164168Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1575043694:164110..164168TCONS_00018917-exon-sc0000313-1575043694:164110..164168Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1491911889:164798..164883TCONS_00018917-exon-sc0000313-1491911889:164798..164883Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1510915933:164798..164883TCONS_00018917-exon-sc0000313-1510915933:164798..164883Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1575043694:164798..164883TCONS_00018917-exon-sc0000313-1575043694:164798..164883Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1491911889:165570..165744TCONS_00018917-exon-sc0000313-1491911889:165570..165744Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1510915933:165570..165744TCONS_00018917-exon-sc0000313-1510915933:165570..165744Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1575043694:165570..165744TCONS_00018917-exon-sc0000313-1575043694:165570..165744Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1491911889:166082..166271TCONS_00018917-exon-sc0000313-1491911889:166082..166271Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1510915933:166082..166271TCONS_00018917-exon-sc0000313-1510915933:166082..166271Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1575043694:166082..166271TCONS_00018917-exon-sc0000313-1575043694:166082..166271Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1491911889:166514..167410TCONS_00018917-exon-sc0000313-1491911889:166514..167410Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1510915933:166514..167410TCONS_00018917-exon-sc0000313-1510915933:166514..167410Clytia hemisphaericaexon
TCONS_00018917-exon-sc0000313-1575043694:166514..167410TCONS_00018917-exon-sc0000313-1575043694:166514..167410Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:163358..167410 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.5641	43.5877	31.7837	20.3113	1.65963	0.874411	0.222092	0	0	0.22539	0	0.071905	0	0	0	0	0.45388	0.41956	0	0	0.939492	0.772212	19.9075	7.65306	62.7346	66.3664	0.740216	1.04277	8.58013	10.6709
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020984Speedy
Blast
[Close]
BLAST of TCONS_00018917 vs. Swiss-Prot (Human)
Match: SPDYA (Speedy protein A OS=Homo sapiens GN=SPDYA PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.083e-38
Identity = 75/160 (46.88%), Postives = 103/160 (64.38%), Query Frame = 1 
Query:  457 IQDFLWLDRCFTLCDKYLLAMIYVYFRRAKLTRKDFTRQNFFLALYIAHXXXXXXXXLKMEIYPWALGSELWRSKLKEFLYKRNVFLQRMKFRAVVSRTTCDEIFDLFPKHPAWQRERNGNHGGAIRFYNQNLENEVFSPSRNQMRCKVCLNGKSPIRIS 936
            IQDFLW+D C  + DKYLLAM +VYF+RAK T  + TR NFF+ALY+A+ +EED+EE K EI+PWALG   WR     FL  R+    R+ +RA+VSR  C+E+  + P H  WQRER+ +H GA+R YN++       PS   + C +C   +  +R+ 
Sbjct:   83 IQDFLWMDCCCKIADKYLLAMTFVYFKRAKFTISEHTRINFFIALYLANTVEEDEEETKYEIFPWALGKN-WRKLFPNFLKLRDQLWDRIDYRAIVSRRCCEEVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRLG 241
The following BLAST results are available for this feature:
BLAST of TCONS_00018917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPDYA2.083e-3846.88Speedy protein A OS=Homo sapiens GN=SPDYA PE=1 SV=... [more]
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