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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018902 ID=TCONS_00018902|Name=TCONS_00018902|organism=Clytia hemisphaerica|type=transcript|length=881bp
TTTTATTGGTCAAGTTTAATTCTCTTCTTGTAGAATTTTAAACGCTCTCT
TTACCTTTTACCCTTTTCTTACCCCTCGTTCTTTGGGCCCTGTTGAAatg
tttgaatttatttataCAGTATTGTGATTATTCACCGTTTTAGTAGCTAA
CACTACGGGACTTGAAATTAAGTATTATTTACTACTTTTAGTAAACGTTA
GTATATAGCTTCTGATTCCCTCAAATTCAAAtaccttatataaaaaagaa
aaagtacttGCTGAAAAAGTTCACGTCTTTCTTACGTACTCTTCAAAACA
TATGTATGTAATTTTTAGTGCACTATGGATGAGTTAAATTCTTGGTTTTC
AAATAACTTGTTTAAAACTGATGGACAGTATTGCGCTATATCGAAAATCA
AATGCAAATATGACGCAGAATCTTCAAAAACTAGTACATCCAATGAACTC
TTTCAAGAAGCTTTAGAACGAAATCTTGCCAGGAGAAATATCGTTTACAC
GATTGGTAGAAAAAGAAATCGAAAGAGAAAGTATGAAAAGATTATTACTG
GTGTCAATCTATCGAATCTTAAACAAAGCTCCAGTCGCAAAAAAGCTCTC
ACCACTGCCAATGCAAATGCTGACTATCCTGAAGTTCTCACTGCAAAAGC
TGACTATCCTGAAGTTCTCACTACAAATGCTGTCTATCCTGAAGTTCTGA
CTGCAAAAGCTGACAATGCTGAAGTTCTTACTGCAAAAGCTGACTATCCT
GAAGTTCTGACTGCGAATGCTGACAATGCTGCAGTTCTCACTGCGAATGC
TGACAATGCTGAAGTTCTCAATGCAAATGCTGACTATCCTGACGTTCTCA
CTGCAAATGCTGACTATCTTGAAGTTCTCAC Run BLAST on NCBI protein sequence of TCONS_00018902-protein >TCONS_00018902-protein ID=TCONS_00018902-protein|Name=TCONS_00018902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MDELNSWFSNNLFKTDGQYCAISKIKCKYDAESSKTSTSNELFQEALERN
LARRNIVYTIGRKRNRKRKYEKIITGVNLSNLKQSSSRKKALTTANANAD
YPEVLTAKADYPEVLTTNAVYPEVLTAKADNAEVLTAKADYPEVLTANAD
NAAVLTANADNAEVLNANADYPDVLTANADYLEVL Run BLAST on NCBI transcript from alignment at sc0000310:332554..333434 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018902 ID=TCONS_00018902|Name=TCONS_00018902|organism=Clytia hemisphaerica|type=transcript|length=881bp|location=Sequence derived from alignment at sc0000310:332554..333434 (Clytia hemisphaerica)
GTGAGAACTTCAAGATAGTCAGCATTTGCAGTGAGAACGTCAGGATAGTC
AGCATTTGCATTGAGAACTTCAGCATTGTCAGCATTCGCAGTGAGAACTG
CAGCATTGTCAGCATTCGCAGTCAGAACTTCAGGATAGTCAGCTTTTGCA
GTAAGAACTTCAGCATTGTCAGCTTTTGCAGTCAGAACTTCAGGATAGAC
AGCATTTGTAGTGAGAACTTCAGGATAGTCAGCTTTTGCAGTGAGAACTT
CAGGATAGTCAGCATTTGCATTGGCAGTGGTGAGAGCTTTTTTGCGACTG
GAGCTTTGTTTAAGATTCGATAGATTGACACCAGTAATAATCTTTTCATA
CTTTCTCTTTCGATTTCTTTTTCTACCAATCGTGTAAACGATATTTCTCC
TGGCAAGATTTCGTTCTAAAGCTTCTTGAAAGAGTTCATTGGATGTACTA
GTTTTTGAAGATTCTGCGTCATATTTGCATTTGATTTTCGATATAGCGCA
ATACTGTCCATCAGTTTTAAACAAGTTATTTGAAAACCAAGAATTTAACT
CATCCATAGTGCACTAAAAATTACATACATATGTTTTGAAGAGTACGTAA
GAAAGACGTGAACTTTTTCAGCaagtactttttcttttttatataaggta
TTTGAATTTGAGGGAATCAGAAGCTATATACTAACGTTTACTAAAAGTAG
TAAATAATACTTAATTTCAAGTCCCGTAGTGTTAGCTACTAAAACGGTGA
ATAATCACAATACTGtataaataaattcaaacatTTCAACAGGGCCCAAA
GAACGAGGGGTAAGAAAAGGGTAAAAGGTAAAGAGAGCGTTTAAAATTCT
ACAAGAAGAGAATTAAACTTGACCAATAAAA Coding sequence (CDS) from alignment at sc0000310:332554..333434 >TCONS_00018902 ID=TCONS_00018902|Name=TCONS_00018902|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0000310:332554..333434 (Clytia hemisphaerica)
GAGAACTTCAAGATAGTCAGCATTTGCAGTGAGAACGTCAGGATAGTCAG
CATTTGCATTGAGAACTTCAGCATTGTCAGCATTCGCAGTGAGAACTGCA
GCATTGTCAGCATTCGCAGTCAGAACTTCAGGATAGTCAGCTTTTGCAGT
AAGAACTTCAGCATTGTCAGCTTTTGCAGTCAGAACTTCAGGATAGACAG
CATTTGTAGTGAGAACTTCAGGATAGTCAGCTTTTGCAGTGAGAACTTCA
GGATAGTCAGCATTTGCATTGGCAGTGGTGAGAGCTTTTTTGCGACTGGA
GCTTTGTTTAAGATTCGATAGATTGACACCAGTAATAATCTTTTCATACT
TTCTCTTTCGATTTCTTTTTCTACCAATCGTGTAAACGATATTTCTCCTG
GCAAGATTTCGTTCTAAAGCTTCTTGAAAGAGTTCATTGGATGTACTAGT
TTTTGAAGATTCTGCGTCATATTTGCATTTGATTTTCGATATAGCGCAAT
ACTGTCCATCAGTTTTAAACAAGTTATTTGAAAACCAAGAATTTAACTCA
TCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018902-exon-sc0000310-1491911889:332554..333434 | TCONS_00018902-exon-sc0000310-1491911889:332554..333434 | Clytia hemisphaerica | exon |
| TCONS_00018902-exon-sc0000310-1510915933:332554..333434 | TCONS_00018902-exon-sc0000310-1510915933:332554..333434 | Clytia hemisphaerica | exon |
| TCONS_00018902-exon-sc0000310-1575043694:332554..333434 | TCONS_00018902-exon-sc0000310-1575043694:332554..333434 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000310 | supercontig | sc0000310:332554..333434 . |
Blast
The following BLAST results are available for this feature:
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