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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018898 ID=TCONS_00018898|Name=TCONS_00018898|organism=Clytia hemisphaerica|type=transcript|length=1394bp
CCTCTCTCCAGTATGGACAATATCTTGCTCAAACTGGTGTACCACACAAT
CTTTCCTACCAATGTTCTCAACTTCCCAGAAACGATCCAAAGACTCCTTC
AACTGTCGATCCGAATAACTTTCAACAGAACacctaaagttaaaaaaaca
ataacTATCTTCTCTACTTTTGACCTTTGCCTTAACCTTTCCACTCAAAA
CCCAACCAACGACCGTCTTCGACGCAACTGGACCTGACTTACCTATTTTG
GTCTTACCGGAGAAAAAGTCATGGTAAAAATCAATACCGACAACAACACC
AACTGGGCAATCGATTGAAACCGCATTAAAGGTATCCGCCAACTCTAAAT
CCCTCAAATGATCGTATTTTGAACGAACAAAGACCTTGGATATCGAGCCA
CAAATCCTCGGGACACAAAGTGCTTCAACAGCTGTGAAAGAGTTGCGGCC
TTTGTGTTTAACCTTGATCGTGACAACATCCAAGAACttggaaacttttt
tgctgTTGTCTCCCTCACCGAAAGTCTTGATGACTactttctcttttctt
tcagaCTTCAACTGTAACTTATCTCTCAACGCTTGAGTCACGAAACTCCT
TTGACTACCACTGTCAAACAAAATCTTAGAAGAACTCCCCTGTCTCTTAC
ACTTATCCTGAATATAAGCTGTAGCTGTCTGCAACAAAATAGACTCGCGT
TCTGCTCTGGCTGACATAACAAGACCTTGCTGAATTTCTTCTAGTGACTC
TCCGTCATCCTGATCTCTCTCTCTGTCTTCTCCACCTCGATCACCATTTC
TGACTCTATTCTCTTGATCTCTTCCTCCACGATTTCTATCTCTATCTCTA
TCTCTTTCTCGATTTCTCTCGTTCCTGTCTCCCTTTCCAAAACAAATTGC
AATGTTATGCTTCCCATTGCAGTTCCTGCAAATATACTTTACTCTACACT
CTCGCTTCTGATGACCTTTCTTCAAACAGAGAAAACATCTCCTATCTCTC
CTCAACATGTCAGTCCTGGACTTGACATTAGTAACCTTTCTACACTTGTG
AGATGCATGATCTTTACTACAGAAAACACTTACTACATCCTCACTCATAC
CACCGAAAAGATTCCATGTGGTAGACTTCACTTCNACATTAGTAACCTTT
CTACACTTGTGAGATGCATGATCTTTACTACAGAAAACACACTTATCAGC
TACATCCTCACTCATACCACCGAAAAGATTCCATGTGGTAGACTTACCTT
TGGACGAAGGAGACGATGAAGATCCACCTAAGAATGAGGAACAATTCTCA
CTAGTTCTGATCTCCTTGTTCATATACTCAATCAACTTGTCTAAAGTCCA
AACTTCATCCTCAAAACGTCTAGAAATGTGGAAAACTAACTCGT Run BLAST on NCBI protein sequence of TCONS_00018898-protein >TCONS_00018898-protein ID=TCONS_00018898-protein|Name=TCONS_00018898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
ELVFHISRRFEDEVWTLDKLIEYMNKEIRTSENCSSFLGGSSSSPSSKGK
STTWNLFGGMSEDVADKCVFCSKDHASHKCRKVTNXEVKSTTWNLFGGMS
EDVVSVFCSKDHASHKCRKVTNVKSRTDMLRRDRRCFLCLKKGHQKRECR
VKYICRNCNGKHNIAICFGKGDRNERNRERDRDRDRNRGGRDQENRVRNG
DRGGEDRERDQDDGESLEEIQQGLVMSARAERESILLQTATAYIQDKCKR
QGSSSKILFDSGSQRSFVTQALRDKLQLKSERKEKVVIKTFGEGDNSKKV
SKFLDVVTIKVKHKGRNSFTAVEALCVPRICGSISKVFVRSKYDHLRDLE
LADTFNAVSIDCPVGVVVGIDFYHDFFSGKTKIGKSGPVASKTVVGWVLS
GKVKAKVKSREDSYCFFNFRCSVESYSDRQLKESLDRFWEVENIGRKDCV
VHQFEQDIVHTGER Run BLAST on NCBI transcript from alignment at sc0000310:241442..242835 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018898 ID=TCONS_00018898|Name=TCONS_00018898|organism=Clytia hemisphaerica|type=transcript|length=1394bp|location=Sequence derived from alignment at sc0000310:241442..242835 (Clytia hemisphaerica)
ACGAGTTAGTTTTCCACATTTCTAGACGTTTTGAGGATGAAGTTTGGACT
TTAGACAAGTTGATTGAGTATATGAACAAGGAGATCAGAACTAGTGAGAA
TTGTTCCTCATTCTTAGGTGGATCTTCATCGTCTCCTTCGTCCAAAGGTA
AGTCTACCACATGGAATCTTTTCGGTGGTATGAGTGAGGATGTAGCTGAT
AAGTGTGTTTTCTGTAGTAAAGATCATGCATCTCACAAGTGTAGAAAGGT
TACTAATGTNGAAGTGAAGTCTACCACATGGAATCTTTTCGGTGGTATGA
GTGAGGATGTAGTAAGTGTTTTCTGTAGTAAAGATCATGCATCTCACAAG
TGTAGAAAGGTTACTAATGTCAAGTCCAGGACTGACATGTTGAGGAGAGA
TAGGAGATGTTTTCTCTGTTTGAAGAAAGGTCATCAGAAGCGAGAGTGTA
GAGTAAAGTATATTTGCAGGAACTGCAATGGGAAGCATAACATTGCAATT
TGTTTTGGAAAGGGAGACAGGAACGAGAGAAATCGAGAAAGAGATAGAGA
TAGAGATAGAAATCGTGGAGGAAGAGATCAAGAGAATAGAGTCAGAAATG
GTGATCGAGGTGGAGAAGACAGAGAGAGAGATCAGGATGACGGAGAGTCA
CTAGAAGAAATTCAGCAAGGTCTTGTTATGTCAGCCAGAGCAGAACGCGA
GTCTATTTTGTTGCAGACAGCTACAGCTTATATTCAGGATAAGTGTAAGA
GACAGGGGAGTTCTTCTAAGATTTTGTTTGACAGTGGTAGTCAAAGGAGT
TTCGTGACTCAAGCGTTGAGAGATAAGTTACAGTTGAAGtctgaaagaaa
agagaaagtAGTCATCAAGACTTTCGGTGAGGGAGACAAcagcaaaaaag
tttccaaGTTCTTGGATGTTGTCACGATCAAGGTTAAACACAAAGGCCGC
AACTCTTTCACAGCTGTTGAAGCACTTTGTGTCCCGAGGATTTGTGGCTC
GATATCCAAGGTCTTTGTTCGTTCAAAATACGATCATTTGAGGGATTTAG
AGTTGGCGGATACCTTTAATGCGGTTTCAATCGATTGCCCAGTTGGTGTT
GTTGTCGGTATTGATTTTTACCATGACTTTTTCTCCGGTAAGACCAAAAT
AGGTAAGTCAGGTCCAGTTGCGTCGAAGACGGTCGTTGGTTGGGTTTTGA
GTGGAAAGGTTAAGGCAAAGGTCAAAAGTAGAGAAGATAgttattgtttt
tttaactttaggtGTTCTGTTGAAAGTTATTCGGATCGACAGTTGAAGGA
GTCTTTGGATCGTTTCTGGGAAGTTGAGAACATTGGTAGGAAAGATTGTG
TGGTACACCAGTTTGAGCAAGATATTGTCCATACTGGAGAGAGG Coding sequence (CDS) from alignment at sc0000310:241442..242835 >TCONS_00018898 ID=TCONS_00018898|Name=TCONS_00018898|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0000310:241442..242835 (Clytia hemisphaerica)
GAGTTAGTTTTCCACATTTCTAGACGTTTTGAGGATGAAGTTTGGACTTT
AGACAAGTTGATTGAGTATATGAACAAGGAGATCAGAACTAGTGAGAATT
GTTCCTCATTCTTAGGTGGATCTTCATCGTCTCCTTCGTCCAAAGGTAAG
TCTACCACATGGAATCTTTTCGGTGGTATGAGTGAGGATGTAGCTGATAA
GTGTGTTTTCTGTAGTAAAGATCATGCATCTCACAAGTGTAGAAAGGTTA
CTAATGTNGAAGTGAAGTCTACCACATGGAATCTTTTCGGTGGTATGAGT
GAGGATGTAGTAAGTGTTTTCTGTAGTAAAGATCATGCATCTCACAAGTG
TAGAAAGGTTACTAATGTCAAGTCCAGGACTGACATGTTGAGGAGAGATA
GGAGATGTTTTCTCTGTTTGAAGAAAGGTCATCAGAAGCGAGAGTGTAGA
GTAAAGTATATTTGCAGGAACTGCAATGGGAAGCATAACATTGCAATTTG
TTTTGGAAAGGGAGACAGGAACGAGAGAAATCGAGAAAGAGATAGAGATA
GAGATAGAAATCGTGGAGGAAGAGATCAAGAGAATAGAGTCAGAAATGGT
GATCGAGGTGGAGAAGACAGAGAGAGAGATCAGGATGACGGAGAGTCACT
AGAAGAAATTCAGCAAGGTCTTGTTATGTCAGCCAGAGCAGAACGCGAGT
CTATTTTGTTGCAGACAGCTACAGCTTATATTCAGGATAAGTGTAAGAGA
CAGGGGAGTTCTTCTAAGATTTTGTTTGACAGTGGTAGTCAAAGGAGTTT
CGTGACTCAAGCGTTGAGAGATAAGTTACAGTTGAAGtctgaaagaaaag
agaaagtAGTCATCAAGACTTTCGGTGAGGGAGACAAcagcaaaaaagtt
tccaaGTTCTTGGATGTTGTCACGATCAAGGTTAAACACAAAGGCCGCAA
CTCTTTCACAGCTGTTGAAGCACTTTGTGTCCCGAGGATTTGTGGCTCGA
TATCCAAGGTCTTTGTTCGTTCAAAATACGATCATTTGAGGGATTTAGAG
TTGGCGGATACCTTTAATGCGGTTTCAATCGATTGCCCAGTTGGTGTTGT
TGTCGGTATTGATTTTTACCATGACTTTTTCTCCGGTAAGACCAAAATAG
GTAAGTCAGGTCCAGTTGCGTCGAAGACGGTCGTTGGTTGGGTTTTGAGT
GGAAAGGTTAAGGCAAAGGTCAAAAGTAGAGAAGATAgttattgtttttt
taactttaggtGTTCTGTTGAAAGTTATTCGGATCGACAGTTGAAGGAGT
CTTTGGATCGTTTCTGGGAAGTTGAGAACATTGGTAGGAAAGATTGTGTG
GTACACCAGTTTGAGCAAGATATTGTCCATACTGGAGAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018898-exon-sc0000310-1491911889:241442..242835 | TCONS_00018898-exon-sc0000310-1491911889:241442..242835 | Clytia hemisphaerica | exon |
| TCONS_00018898-exon-sc0000310-1510915933:241442..242835 | TCONS_00018898-exon-sc0000310-1510915933:241442..242835 | Clytia hemisphaerica | exon |
| TCONS_00018898-exon-sc0000310-1575043694:241442..242835 | TCONS_00018898-exon-sc0000310-1575043694:241442..242835 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000310 | supercontig | sc0000310:241442..242835 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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