TCONS_00018897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018897
Unique NameTCONS_00018897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018897 ID=TCONS_00018897|Name=TCONS_00018897|organism=Clytia hemisphaerica|type=transcript|length=511bp
CTTCGACTAATTTAAAAGAACGACTATTAAGCCAAGACCATCACAGCGAA
AAAACACGCaaagaagaaaatgtaaaagattttgaaaagaaagattcaat
aaaaacaaaagcaatAACCTTTACTTAGCCTATGGCCTTCAATACCGCTA
AGACTCAAAGATTAATATCAAAACTGATGAAGGAAACGCGATACCTCAAC
TCCTGACGTTTTTTCCAGTTTGAACTGCTTCCGTTCCAATGATCTTTAGA
TGGGTTCTGTATCAGCAAATCGGTGCGCCATGTAAAAACCTGATGTCCCT
AGGTTTCAGAGGGCTGTATTTTAGCTGGTCGGTCTTTAGCAATAATAGTC
GAATCTTGATTTATTAGTTTACATGCTTCTTCCGTTCACTTTATATAATT
ATGATAAGTAACTACTCAAAAACGTGAGTTCACAAGTTTAAATACATGGA
AGACCACGAGATAATCACGTGATCttagaataataaaaatatacaaagaa
agaaaagataa
Run BLAST on NCBI

transcript from alignment at sc0000310:239489..239999

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018897 ID=TCONS_00018897|Name=TCONS_00018897|organism=Clytia hemisphaerica|type=transcript|length=511bp|location=Sequence derived from alignment at sc0000310:239489..239999 (Clytia hemisphaerica)
ttatcttttctttctttgtatatttttattattctaaGATCACGTGATTA
TCTCGTGGTCTTCCATGTATTTAAACTTGTGAACTCACGTTTTTGAGTAG
TTACTTATCATAATTATATAAAGTGAACGGAAGAAGCATGTAAACTAATA
AATCAAGATTCGACTATTATTGCTAAAGACCGACCAGCTAAAATACAGCC
CTCTGAAACCTAGGGACATCAGGTTTTTACATGGCGCACCGATTTGCTGA
TACAGAACCCATCTAAAGATCATTGGAACGGAAGCAGTTCAAACTGGAAA
AAACGTCAGGAGTTGAGGTATCGCGTTTCCTTCATCAGTTTTGATATTAA
TCTTTGAGTCTTAGCGGTATTGAAGGCCATAGGCTAAGTAAAGGTTattg
cttttgtttttattgaatctttcttttcaaaatcttttacattttcttct
ttGCGTGTTTTTTCGCTGTGATGGTCTTGGCTTAATAGTCGTTCTTTTAA
ATTAGTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010590XLOC_010590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018897-exon-sc0000310-1491911889:239489..239999TCONS_00018897-exon-sc0000310-1491911889:239489..239999Clytia hemisphaericaexon
TCONS_00018897-exon-sc0000310-1510915933:239489..239999TCONS_00018897-exon-sc0000310-1510915933:239489..239999Clytia hemisphaericaexon
TCONS_00018897-exon-sc0000310-1575043694:239489..239999TCONS_00018897-exon-sc0000310-1575043694:239489..239999Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000310supercontigsc0000310:239489..239999 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.532744	0	0	0	21.3759	15.4017	1.63831	2.08404	0.197989	0.490484	0	0.0236703	0.156259	0	0.20012	0	0.0881888	0.180781	0.374639	0.130677	0	0.166205	0.325256	0.404743	0.252257	0.225134	0	0	0.553706	0.204777
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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