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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018896 ID=TCONS_00018896|Name=TCONS_00018896|organism=Clytia hemisphaerica|type=transcript|length=2755bp
GGGAGCTTGGGGACGGGAGGGATACCCTTAGATCGCTTAATACCCTTGAG
CACAGAGGACAGGAACCAGTTGTCAAGGAGAGGGTTGGGGAAACCCATCT
CCCGGTGAAGAAGACcaacaaaattcaaataaacACAAACAGACTGCGGC
AACAGGAACCGTGCTAGGTAGGCAGCATACATACAGAGGTGAACACGTTG
AACAGAAGCAGGCGAAATATTAAGCATATTACAAAACTGGAGATAGACCT
TTCGGTGAGTACGGTAGGCCTTGCGGGTATTGACAGCATAGGTGGCTTCA
TGATATAACTGCACTTCTGCCAGCAGCGAAGACGCAAACTCTAAAAGGCA
GAGCGAAGGCATGAGCCAGACCCATATAaaccaagaagaaaaaagaaaca
gtTCTCAGAAATGTGCCAGACAATGTCATCAGAAGGATCAAACTGAGCGA
AACAGTCACAAAGATACTGGAGAAAAGCTGCAAGATGTTTGTGTTCATGC
AACCGAGAGNAAAGTTGTATGTGGCTGAGCACCAGAACAGACGCCTGAGG
TAAGTCATCATGAGCGGGTTGCGAGATGATCCCTTATTCAACATGCCCAC
TGCAGCAGTGTTGTCACAATAGATATGGACTACCTTATTACTGAGAAAAG
GAGCCCAGCGTTCTAAGGCAAACACAATGCAAAGAGCCTCTTTGTAGTTG
ATGTGCAAACCTGCTAGGAAAGGAGCATCAACCCACAAGTTAGAATAGAA
CCAATCCTTCTCAAACACTGCTCCGATACCTGAAGAACAAGCATCTGTGT
GGATGTTAGTAACAGGCCTAGTGTCATGGAACAGACACTGGCCATTGAAA
ACTCCTAGAAAGTCTAGCCACCAGGCAATGTCCTTAAAGAATTCCTCATT
CAACAGACACTTGGATGACTGCTTCTGTAAAGAACCCATAAGGTCCAAAA
TGCGACGCAAAAAGGTTCTTCCACCATAGATGACCTTACAGGCCCAGTTG
AGACGCCCAGCCAGCTGTTGCAGCTGTCTCTTTGAGGCACGAGTTCGTGA
TTGAAAAGACATCAAGACGTCTCTCAGTTCACTTAGCTTTTTATCAGGGA
GTGAGAGAGTTAATGTAGTAGTATCAATCTCAACTCCAAGAAAAACTAGT
TTCCGACATGGTGGAACAACCTTAGAAGGGCTGATTGTGAATCCTAGAGA
AACAAGTAGGGAGTGCAATGTATCAAAGGCAGCTTGACATTCATGTTGAT
TCCTCCCGATGATCAAGAAATCATCAAGATAGACAATGATCAAAGGAAAG
CCTTTCCTCTGCATCATACGTCTAACGCTCTGGGTCAACCGATGAAAGAT
ACCAGGAGCACTGCGTGCACCAAAAGGGAGACGTGTGTCTTTTAGATACG
TGTAATGCTCGTCCCCACTGAATTTCCACTTCAAGCCGAGAGCATCCCGG
TTTGCTGGGTGGACTGGGACAGATCTGTACGCGTGTCTCAAATCTATCTT
AGCGATGAAGAAATCCTTCCCTATCAGCCGACAGGCATCATCTAGAGTCT
GGAAAGATTGCTTATCAATATCAATGTAAGAATTTACACCCAAACCGTAG
GGCATAGAACAGTCATGGATCAAACGGAGATCCTCTGAGTCAGGCTTTGG
AACTGCTCCAAGGGCACTGACGTTTTTCAGCAGATATTATGTAGTTTCCG
GCCGATAGTTCTTCCAAAATAGTGGCTTCAACTTTTCCTTTAGAACTAGG
GCCAACAGCAGAATTATAGTTGTCCATCTCCGCAGGGCTGATCTTAGCAT
CTGCTGGGAGCAATTGAAAACCGTTGACCACCccatcaaataaaaattga
cgATCAGGGTCATCCAGTAATTCTTTGTCCCAAACTGCAGAATCAAGCGG
AGAAGGAGCTGGCTCAGAAGAAGGAAGTCATTGAGATTCCCCTCCACTCC
CAGGGTGCAGAAAACCTTGGTGGGATTTTCCACAAGCCTGAGAGCCAACC
TTGCGGTTACAAGCATGGGTGAACTTGCAGGGAGACTTCTGACAACCTTT
CCTCGAGTTGAACATTCGGCAAATCTCTGAACCAGAGGAGAGATGCGTCA
TAATGGCAGGACCAGAACCCTTATTGTTACCCGCAAAGCCTAAGAAAAAA
GAATCGTTTTTGGATGAGGAAGTATCACTGCTTTGCCCAAGCCCACGAGG
TAGCTTTGCAGCCCAGCGAGGTATGAGAACAACCTCATGTAGGTGACTAT
GGTCAGTACTCCATGAGAACCCATATGTGTGTTGCAAAATCCGAAATTCA
TCGTCATATTGCAACACCGATTGCCATGTGTACTTAGTCGCCAGCTCCAA
GACCTTAATCGCATAGGAGAGGTATTCCTGTACATGAAGAAGGGTAGAGA
GCttcccagaaaaaagtaattcataaaaaatacgaAGATTGGCAATATTA
AACTGTTCTACGGTAACATTGGAAAGTTTTGGTTTAGAGTCCTGTAAAAT
TAAGGCAAGCTTGCAGTTGTTATCATAAGacaaaactttttcatcttctG
CAGGGCGAATGCGAGAAACAAAGTCAACAATTCGTAAGGCTTTACCTCTC
GTGATGTCGTTGGTTCGTGTCGGTCTTAAAAAGAGTTCGTTCTGGGTGAC
TGGGCGATGGGATTCTTGAGAATTCGAGCCAGAATTTAACGACGAAAGTG
AAGCAGCAAAACCAAGTGCATGACCAGCAGAATGAGATTGAGATTGGGTT
TGTTG Run BLAST on NCBI protein sequence of TCONS_00018896-protein >TCONS_00018896-protein ID=TCONS_00018896-protein|Name=TCONS_00018896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp
MPYGLGVNSYIDIDKQSFQTLDDACRLIGKDFFIAKIDLRHAYRSVPVHP
ANRDALGLKWKFSGDEHYTYLKDTRLPFGARSAPGIFHRLTQSVRRMMQR
KGFPLIIVYLDDFLIIGRNQHECQAAFDTLHSLLVSLGFTISPSKVVPPC
RKLVFLGVEIDTTTLTLSLPDKKLSELRDVLMSFQSRTRASKRQLQQLAG
RLNWACKVIYGGRTFLRRILDLMGSLQKQSSKCLLNEEFFKDIAWWLDFL
GVFNGQCLFHDTRPVTNIHTDACSSGIGAVFEKDWFYSNLWVDAPFLAGL
HINYKEALCIVFALERWAPFLSNKVVHIYCDNTAAVGMLNKGSSRNPLMM
TYLRRLFWCSATYNFXLGCMNTNILQLFSSIFVTVSLSLILLMTLSGTFL
RTVSFFFLVYMGLAHAFALPFRVCVFAAGRSAVIS Run BLAST on NCBI transcript from alignment at sc0000310:59589..62343 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018896 ID=TCONS_00018896|Name=TCONS_00018896|organism=Clytia hemisphaerica|type=transcript|length=2755bp|location=Sequence derived from alignment at sc0000310:59589..62343 (Clytia hemisphaerica)
CAACAAACCCAATCTCAATCTCATTCTGCTGGTCATGCACTTGGTTTTGC
TGCTTCACTTTCGTCGTTAAATTCTGGCTCGAATTCTCAAGAATCCCATC
GCCCAGTCACCCAGAACGAACTCTTTTTAAGACCGACACGAACCAACGAC
ATCACGAGAGGTAAAGCCTTACGAATTGTTGACTTTGTTTCTCGCATTCG
CCCTGCagaagatgaaaaagttttgtCTTATGATAACAACTGCAAGCTTG
CCTTAATTTTACAGGACTCTAAACCAAAACTTTCCAATGTTACCGTAGAA
CAGTTTAATATTGCCAATCTtcgtattttttatgaattacttttttctgg
gaaGCTCTCTACCCTTCTTCATGTACAGGAATACCTCTCCTATGCGATTA
AGGTCTTGGAGCTGGCGACTAAGTACACATGGCAATCGGTGTTGCAATAT
GACGATGAATTTCGGATTTTGCAACACACATATGGGTTCTCATGGAGTAC
TGACCATAGTCACCTACATGAGGTTGTTCTCATACCTCGCTGGGCTGCAA
AGCTACCTCGTGGGCTTGGGCAAAGCAGTGATACTTCCTCATCCAAAAAC
GATTCTTTTTTCTTAGGCTTTGCGGGTAACAATAAGGGTTCTGGTCCTGC
CATTATGACGCATCTCTCCTCTGGTTCAGAGATTTGCCGAATGTTCAACT
CGAGGAAAGGTTGTCAGAAGTCTCCCTGCAAGTTCACCCATGCTTGTAAC
CGCAAGGTTGGCTCTCAGGCTTGTGGAAAATCCCACCAAGGTTTTCTGCA
CCCTGGGAGTGGAGGGGAATCTCAATGACTTCCTTCTTCTGAGCCAGCTC
CTTCTCCGCTTGATTCTGCAGTTTGGGACAAAGAATTACTGGATGACCCT
GATcgtcaatttttatttgatggGGTGGTCAACGGTTTTCAATTGCTCCC
AGCAGATGCTAAGATCAGCCCTGCGGAGATGGACAACTATAATTCTGCTG
TTGGCCCTAGTTCTAAAGGAAAAGTTGAAGCCACTATTTTGGAAGAACTA
TCGGCCGGAAACTACATAATATCTGCTGAAAAACGTCAGTGCCCTTGGAG
CAGTTCCAAAGCCTGACTCAGAGGATCTCCGTTTGATCCATGACTGTTCT
ATGCCCTACGGTTTGGGTGTAAATTCTTACATTGATATTGATAAGCAATC
TTTCCAGACTCTAGATGATGCCTGTCGGCTGATAGGGAAGGATTTCTTCA
TCGCTAAGATAGATTTGAGACACGCGTACAGATCTGTCCCAGTCCACCCA
GCAAACCGGGATGCTCTCGGCTTGAAGTGGAAATTCAGTGGGGACGAGCA
TTACACGTATCTAAAAGACACACGTCTCCCTTTTGGTGCACGCAGTGCTC
CTGGTATCTTTCATCGGTTGACCCAGAGCGTTAGACGTATGATGCAGAGG
AAAGGCTTTCCTTTGATCATTGTCTATCTTGATGATTTCTTGATCATCGG
GAGGAATCAACATGAATGTCAAGCTGCCTTTGATACATTGCACTCCCTAC
TTGTTTCTCTAGGATTCACAATCAGCCCTTCTAAGGTTGTTCCACCATGT
CGGAAACTAGTTTTTCTTGGAGTTGAGATTGATACTACTACATTAACTCT
CTCACTCCCTGATAAAAAGCTAAGTGAACTGAGAGACGTCTTGATGTCTT
TTCAATCACGAACTCGTGCCTCAAAGAGACAGCTGCAACAGCTGGCTGGG
CGTCTCAACTGGGCCTGTAAGGTCATCTATGGTGGAAGAACCTTTTTGCG
TCGCATTTTGGACCTTATGGGTTCTTTACAGAAGCAGTCATCCAAGTGTC
TGTTGAATGAGGAATTCTTTAAGGACATTGCCTGGTGGCTAGACTTTCTA
GGAGTTTTCAATGGCCAGTGTCTGTTCCATGACACTAGGCCTGTTACTAA
CATCCACACAGATGCTTGTTCTTCAGGTATCGGAGCAGTGTTTGAGAAGG
ATTGGTTCTATTCTAACTTGTGGGTTGATGCTCCTTTCCTAGCAGGTTTG
CACATCAACTACAAAGAGGCTCTTTGCATTGTGTTTGCCTTAGAACGCTG
GGCTCCTTTTCTCAGTAATAAGGTAGTCCATATCTATTGTGACAACACTG
CTGCAGTGGGCATGTTGAATAAGGGATCATCTCGCAACCCGCTCATGATG
ACTTACCTCAGGCGTCTGTTCTGGTGCTCAGCCACATACAACTTTNCTCT
CGGTTGCATGAACACAAACATCTTGCAGCTTTTCTCCAGTATCTTTGTGA
CTGTTTCGCTCAGTTTGATCCTTCTGATGACATTGTCTGGCACATTTCTG
AGAactgtttcttttttcttcttggttTATATGGGTCTGGCTCATGCCTT
CGCTCTGCCTTTTAGAGTTTGCGTCTTCGCTGCTGGCAGAAGTGCAGTTA
TATCATGAAGCCACCTATGCTGTCAATACCCGCAAGGCCTACCGTACTCA
CCGAAAGGTCTATCTCCAGTTTTGTAATATGCTTAATATTTCGCCTGCTT
CTGTTCAACGTGTTCACCTCTGTATGTATGCTGCCTACCTAGCACGGTTC
CTGTTGCCGCAGTCTGTTTGTgtttatttgaattttgttgGTCTTCTTCA
CCGGGAGATGGGTTTCCCCAACCCTCTCCTTGACAACTGGTTCCTGTCCT
CTGTGCTCAAGGGTATTAAGCGATCTAAGGGTATCCCTCCCGTCCCCAAG
CTCCC Coding sequence (CDS) from alignment at sc0000310:59589..62343 >TCONS_00018896 ID=TCONS_00018896|Name=TCONS_00018896|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at sc0000310:59589..62343 (Clytia hemisphaerica)
ATGCCCTACGGTTTGGGTGTAAATTCTTACATTGATATTGATAAGCAATC
TTTCCAGACTCTAGATGATGCCTGTCGGCTGATAGGGAAGGATTTCTTCA
TCGCTAAGATAGATTTGAGACACGCGTACAGATCTGTCCCAGTCCACCCA
GCAAACCGGGATGCTCTCGGCTTGAAGTGGAAATTCAGTGGGGACGAGCA
TTACACGTATCTAAAAGACACACGTCTCCCTTTTGGTGCACGCAGTGCTC
CTGGTATCTTTCATCGGTTGACCCAGAGCGTTAGACGTATGATGCAGAGG
AAAGGCTTTCCTTTGATCATTGTCTATCTTGATGATTTCTTGATCATCGG
GAGGAATCAACATGAATGTCAAGCTGCCTTTGATACATTGCACTCCCTAC
TTGTTTCTCTAGGATTCACAATCAGCCCTTCTAAGGTTGTTCCACCATGT
CGGAAACTAGTTTTTCTTGGAGTTGAGATTGATACTACTACATTAACTCT
CTCACTCCCTGATAAAAAGCTAAGTGAACTGAGAGACGTCTTGATGTCTT
TTCAATCACGAACTCGTGCCTCAAAGAGACAGCTGCAACAGCTGGCTGGG
CGTCTCAACTGGGCCTGTAAGGTCATCTATGGTGGAAGAACCTTTTTGCG
TCGCATTTTGGACCTTATGGGTTCTTTACAGAAGCAGTCATCCAAGTGTC
TGTTGAATGAGGAATTCTTTAAGGACATTGCCTGGTGGCTAGACTTTCTA
GGAGTTTTCAATGGCCAGTGTCTGTTCCATGACACTAGGCCTGTTACTAA
CATCCACACAGATGCTTGTTCTTCAGGTATCGGAGCAGTGTTTGAGAAGG
ATTGGTTCTATTCTAACTTGTGGGTTGATGCTCCTTTCCTAGCAGGTTTG
CACATCAACTACAAAGAGGCTCTTTGCATTGTGTTTGCCTTAGAACGCTG
GGCTCCTTTTCTCAGTAATAAGGTAGTCCATATCTATTGTGACAACACTG
CTGCAGTGGGCATGTTGAATAAGGGATCATCTCGCAACCCGCTCATGATG
ACTTACCTCAGGCGTCTGTTCTGGTGCTCAGCCACATACAACTTTNCTCT
CGGTTGCATGAACACAAACATCTTGCAGCTTTTCTCCAGTATCTTTGTGA
CTGTTTCGCTCAGTTTGATCCTTCTGATGACATTGTCTGGCACATTTCTG
AGAactgtttcttttttcttcttggttTATATGGGTCTGGCTCATGCCTT
CGCTCTGCCTTTTAGAGTTTGCGTCTTCGCTGCTGGCAGAAGTGCAGTTA
TATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018896-exon-sc0000310-1491911889:59589..62343 | TCONS_00018896-exon-sc0000310-1491911889:59589..62343 | Clytia hemisphaerica | exon |
| TCONS_00018896-exon-sc0000310-1510915933:59589..62343 | TCONS_00018896-exon-sc0000310-1510915933:59589..62343 | Clytia hemisphaerica | exon |
| TCONS_00018896-exon-sc0000310-1575043694:59589..62343 | TCONS_00018896-exon-sc0000310-1575043694:59589..62343 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000310 | supercontig | sc0000310:59589..62343 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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