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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018891 ID=TCONS_00018891|Name=TCONS_00018891|organism=Clytia hemisphaerica|type=transcript|length=661bp
ACACTAATAGGGTACGCACAATTAGCAGTGTCACATGAAAAAGGTGTTCA
AAAGCTAAAGGAGAGCACATACTAGAATCGAGGCGAACAAGAGTcatact
actttgacccctgtTGTCATTGAACCCACTGTGACAGCTCAAGAATCTGT
TAATCAAGCAAGGGAAATGAGGAAGTTGTCAAGCGCagatcttgaatttt
ttgagaCACCACTCATATATATTGTACAGCATGGACCTACACCTGATGAT
TCAAGCACCGGAATCGTAGATGATTCGGTGGTACTTTCTCATCCTGTTGG
TGATTCGAGCCAGGAGGTTCACCAAGCACTAGACTCGAGCAGGTACTTCC
ATACAACTAACGGTGGGCTGAGTGATGATTCGAGCAGGCCTGTTTGTACC
TTAGATGATTCGGCGGTACCTTCTCATTCCGTTGGTGATTCGAGCCAGGA
GGTTCACCGAGCACTAGACTCGAGCGGGTACTTCCATACAACTAACGGTG
GGCTGATTGATGATTCGGTGGTACCTTCCCATTCCGTTGGTGATTCGAGC
CAGGAGGTTCACCGAGCACTAGACTCGAGCGGGTACTTCCATACAACTAA
CGGTGGGCTGAGTGATAATTCGGTGGTACCTTCTCATTCCGTTGGTGATT
CGAGCCAGGAG Run BLAST on NCBI protein sequence of TCONS_00018891-protein >TCONS_00018891-protein ID=TCONS_00018891-protein|Name=TCONS_00018891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MRKLSSADLEFFETPLIYIVQHGPTPDDSSTGIVDDSVVLSHPVGDSSQE
VHQALDSSRYFHTTNGGLSDDSSRPVCTLDDSAVPSHSVGDSSQEVHRAL
DSSGYFHTTNGGLIDDSVVPSHSVGDSSQEVHRALDSSGYFHTTNGGLSD
NSVVPSHSVGDSSQE Run BLAST on NCBI transcript from alignment at sc0000310:325994..326999- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018891 ID=TCONS_00018891|Name=TCONS_00018891|organism=Clytia hemisphaerica|type=transcript|length=1006bp|location=Sequence derived from alignment at sc0000310:325994..326999- (Clytia hemisphaerica)
ACACTAATAGGGTACGCACAATTAGCAGTGTCACATGAAAAAGGTGTTCA
AAAGCTAAAGGAGAGCACATACTAGAATCGAGGCGAACAAGAGTCATACT
ACTTTGACCCCTGTTGTCATTGAACCCACTGTGACAGCTCAAGAATCTGT
TAATCAAGCAAGGGAAATGAGGAAGTTGTCAAGCGCAGATCTTGAATTTT
TTGAGACACCACTCATATATATTGTACAGCATGGACCTACACCTGATGAT
TCAAGCACCGGAATCGTAGATGATTCGGTGGTACTTTCTCATCCTGTTGG
TGATTCGAGCCAGGAGGCTCACCAAGCACTAGACTCGAGCGGGTACTTCC
ATACAACTAACTGTGGGCTGAGTGATGATTCGGTGGTACCTTCTCATTCC
GTTGGTGATTCGAGCCAGGAGGTTCACCAAGCACTAGACTCGAGCGGGTA
CTTCCATACAACTAACTGTGGGCTGAGTGATGATTCGGTGGTACCTTCTC
ATTCCGTTGGTGATTCGAGCCAGGAGGTTCACCAAGCACTAGACTCGAGC
AGGTACTTCCATACAACTAACGGTGGGCTGAGTGATGATTCGAGCAGGCC
TGTTTGTACCTTAGATGATTCGGCGGTACCTTCTCATTCCGTTGGTGATT
CGAGCCAGGAGGTTCACCAAGCACTAGACTCGAGCAGGTACTTCCATACA
ACTAACGGTGGGCTGAGTGATGATTCGAGCAGGCCTGTTTGTACCTTAGA
TGATTCGGCGGTACCTTCTCATTCCGTTGGTGATTCGAGCCAGGAGGTTC
ACCGAGCACTAGACTCGAGCGGGTACTTCCATACAACTAACGGTGGGCTG
ATTGATGATTCGGTGGTACCTTCCCATTCCGTTGGTGATTCGAGCCAGGA
GGTTCACCGAGCACTAGACTCGAGCGGGTACTTCCATACAACTAACGGTG
GGCTGAGTGATAATTCGGTGGTACCTTCTCATTCCGTTGGTGATTCGAGC
CAGGAG Coding sequence (CDS) from alignment at sc0000310:325994..326999- >TCONS_00018891 ID=TCONS_00018891|Name=TCONS_00018891|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000310:325994..326999- (Clytia hemisphaerica)
GTTCACCAAGCACTAGACTCGAGCAGGTACTTCCATACAACTAACGGTGG
GCTGAGTGATGATTCGAGCAGGCCTGTTTGTACCTTAGATGATTCGGCGG
TACCTTCTCATTCCGTTGGTGATTCGAGCCAGGAGGTTCACCGAGCACTA
GACTCGAGCGGGTACTTCCATACAACTAACGGTGGGCTGATTGATGATTC
GGTGGTACCTTCCCATTCCGTTGGTGATTCGAGCCAGGAGGTTCACCGAG
CACTAGACTCGAGCGGGTACTTCCATACAACTAACGGTGGGCTGAGTGAT
AATTCGGTGGTACCTTCTCATTCCGTTGGTGATTCGAGCCAGGAGATGAG
GAAGTTGTCAAGCGCAGATCTTGAATTTTTTGAGACACCACTCATATATA
TTGTACAGCATGGACCTACACCTGATGATTCAAGCACCGGAATCGTAGAT
GATTCGGTGGTACTTTCTCATCCTGTTGGTGATTCGAGCCAGGAGGTTCA
CCAAGCACTAGACTCGAGCAGGTACTTCCATACAACTAACGGTGGGCTGA
GTGATGATTCGAGCAGGCCTGTTTGTACCTTAGATGATTCGGCGGTACCT
TCTCATTCCGTTGGTGATTCGAGCCAGGAGGTTCACCGAGCACTAGACTC
GAGCGGGTACTTCCATACAACTAACGGTGGGCTGATTGATGATTCGGTGG
TACCTTCCCATTCCGTTGGTGATTCGAGCCAGGAGGTTCACCGAGCACTA
GACTCGAGCGGGTACTTCCATACAACTAACGGTGGGCTGAGTGATAATTC
GGTGGTACCTTCTCATTCCGTTGGTGATTCGAGCCAGGAGATGAGGAAGT
TGTCAAGCGCAGATCTTGAATTTTTTGAGACACCACTCATATATATTGTA
CAGCATGGACCTACACCTGATGATTCAAGCACCGGAATCGTAGATGATTC
GGTGGTACTTTCTCATCCTGTTGGTGATTCGAGCCAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018891-exon-sc0000310-1575043694:326684..326999 | TCONS_00018891-exon-sc0000310-1575043694:326684..326999 | Clytia hemisphaerica | exon |
| TCONS_00018891-exon-sc0000310-1575043694:325994..326338 | TCONS_00018891-exon-sc0000310-1575043694:325994..326338 | Clytia hemisphaerica | exon |
| TCONS_00018891-exon-sc0000310-1510915933:326684..326999 | TCONS_00018891-exon-sc0000310-1510915933:326684..326999 | Clytia hemisphaerica | exon |
| TCONS_00018891-exon-sc0000310-1510915933:325994..326338 | TCONS_00018891-exon-sc0000310-1510915933:325994..326338 | Clytia hemisphaerica | exon |
| TCONS_00018891-exon-sc0000310-1491911889:326684..326999 | TCONS_00018891-exon-sc0000310-1491911889:326684..326999 | Clytia hemisphaerica | exon |
| TCONS_00018891-exon-sc0000310-1491911889:325994..326338 | TCONS_00018891-exon-sc0000310-1491911889:325994..326338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000310 | supercontig | sc0000310:325994..326999 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011993 | PH_dom-like |
Blast
The following BLAST results are available for this feature:
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