TCONS_00018890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018890
Unique NameTCONS_00018890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018890 ID=TCONS_00018890|Name=TCONS_00018890|organism=Clytia hemisphaerica|type=transcript|length=289bp
NCATGTGGCAAACTGATTCTTTGGATCAGTTCAGAAATTTTCGCCGGCAA
CTGATCAATCTCAAAACAGTTTGTTCTGACTATCATGGGCTAGAAAAGTG
TGCATCATGTCCTACGGAGAGCGGCAGTGTATTTTACTGTTTTGATGCAA
ATTTTGGTCTGGTATTGAAAAATTCTTCCTCTAAGTCAAAGAGACTGGCA
ACAAGATCGGACAACCTGTTTTTCTTGGATGAAGAAGTGAAGACATTCAT
GGATGGCTATGATGACTCTCTAAAGACAAAGGTAAGTAT
Run BLAST on NCBI

transcript from alignment at sc0000310:321574..322142-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018890 ID=TCONS_00018890|Name=TCONS_00018890|organism=Clytia hemisphaerica|type=transcript|length=569bp|location=Sequence derived from alignment at sc0000310:321574..322142- (Clytia hemisphaerica)
NCATGTGGCAAACTGATTCTTTGGATCAGTTCAGAAATTTTCGCCGGCAA
CTGATCAATCTCAAAACAGTTTGTTCTGACTATCATGGGCTAGAAAAGTG
TGCATCATGTCCTACGGTAGAGGGGTTTCTTCGTTTTAATTTTTAGGGTG
AATTAGCGATTTATTTTAGAGCATTTTAAGAAATGATATTTTACAATTGC
ATCAAATGACTAGCTGGCTTAACAGGAAAAGCATTAAAAGTCTTTAAAAA
AAACTGCTGACAGATTTCCTCTCTTTGATATTTAATAGCCAGTTGAAAAA
AATGAAGGAAGGATGGAATGACGGATCCTTAAAAAATTCAATTTGATTCG
AACATGAGCCTAATGTAAATTACATACATTTTACTTTCTTTTACAGGAGA
GCGGCAGTGTATTTTACTGTTTTGATGCAAATTTTGGTCTGGTATTGAAA
AATTCTTCCTCTAAGTCAAAGAGACTGGCAACAAGATCGGACAACCTGTT
TTTCTTGGATGAAGAAGTGAAGACATTCATGGATGGCTATGATGACTCTC
TAAAGACAAAGGTAAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010583XLOC_010583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018890-exon-sc0000310-1575043694:322027..322142TCONS_00018890-exon-sc0000310-1575043694:322027..322142Clytia hemisphaericaexon
TCONS_00018890-exon-sc0000310-1575043694:321574..321746TCONS_00018890-exon-sc0000310-1575043694:321574..321746Clytia hemisphaericaexon
TCONS_00018890-exon-sc0000310-1510915933:322027..322142TCONS_00018890-exon-sc0000310-1510915933:322027..322142Clytia hemisphaericaexon
TCONS_00018890-exon-sc0000310-1510915933:321574..321746TCONS_00018890-exon-sc0000310-1510915933:321574..321746Clytia hemisphaericaexon
TCONS_00018890-exon-sc0000310-1491911889:322027..322142TCONS_00018890-exon-sc0000310-1491911889:322027..322142Clytia hemisphaericaexon
TCONS_00018890-exon-sc0000310-1491911889:321574..321746TCONS_00018890-exon-sc0000310-1491911889:321574..321746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000310supercontigsc0000310:321574..322142 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	21.4336	15.0552	17.5958	15.4102	13.3933	16.5898	10.2877	20.2882	17.911	20.7352	0	0	0	0	0	0	0	0	0	0	0.474011	8.88391	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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