TCONS_00018889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018889
Unique NameTCONS_00018889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018889 ID=TCONS_00018889|Name=TCONS_00018889|organism=Clytia hemisphaerica|type=transcript|length=306bp
TTGCGTTCAAAAAGGAAGACCAACAAGCTCAGCATTACTGGCATATTTGG
AATGTCTTGTCGACATGAATTCCCCAAGCTGTTTCTGAGCGTGAGACATG
GTGAAAGATTGGGCTATGCAGTGATAATACTTGATCAAATATTGAAGGAT
GTAAAAGACAAAGATTTGAGTGTTCACATCATATATGATATTGCTTGTGT
ACTAAAAGCCCATTTGCAGaaaaagaaaagttataccaaatacaaaaatt
ttaaattcggaattccagttTTTCATTCCTATGGTCACAGGGGAGATTGT
CAGGTA
Run BLAST on NCBI

protein sequence of TCONS_00018889-protein

>TCONS_00018889-protein ID=TCONS_00018889-protein|Name=TCONS_00018889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
LRSKRKTNKLSITGIFGMSCRHEFPKLFLSVRHGERLGYAVIILDQILKD
VKDKDLSVHIIYDIACVLKAHLQKKKSYTKYKNFKFGIPVFHSYGHRGDC
QV
Run BLAST on NCBI

transcript from alignment at sc0000310:320627..321402-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018889 ID=TCONS_00018889|Name=TCONS_00018889|organism=Clytia hemisphaerica|type=transcript|length=776bp|location=Sequence derived from alignment at sc0000310:320627..321402- (Clytia hemisphaerica)
TTGCGTTCAAAAAGGAAGACCAACAAGCTCAGCATTACTGGCATATTTGG
AATGTCTTGTCGACATGAATTCCCCAAGCTGTTTCTGAGCGTGAGACATG
GTGAAAGGTATTTTATATACAATATGGTATACTAATCACAGCGAAGGAAG
GTCATTAAAATTTATTTGATAAATTGATAAATTGTGAAGAATGATTATTA
TTTTATTCTGGAGCAATATGAATAAAATTCAATGAAAGATCTGTCATCTC
TATCTCATACAAAAAATATGCTACCTTGTGAATCATGAAATAAACCTTTG
ATATAATGACGAAGTCTAACGTTGCGAAAGAGTGAAAATGAGCTAGAGAG
AATGTCATAATATTTATTTATTATTCATTATGCCATAAAGTTTATTTCCT
TTGATTTTCAACTGATTAGATTGGGCTATGCAGTGATAATACTTGATCAA
ATATTGAAGGATGTAAAAGACAAAGATTTGAGTGTTCACATCATATATGA
TATTGCTTGTGTACTAAAAGCCCATTTGCAGGTATTTCTTTTTACTCATC
GTCACAGTAATGTCAATGCTCCTAGATCTCTTTGAATAAATTTAGAAAGT
AGGGCCTCAAAATTTCATAGAGAAAAACCTTTTAGAAGTCAAATTTAATA
ACAGATATCTATACTAATGATTCATTTCTTCTTTTGTAGAAAAAGAAAAG
TTATACCAAATACAAAAATTTTAAATTCGGAATTCCAGTTTTTCATTCCT
ATGGTCACAGGGGAGATTGTCAGGTA

Coding sequence (CDS) from alignment at sc0000310:320627..321402-

>TCONS_00018889 ID=TCONS_00018889|Name=TCONS_00018889|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000310:320627..321402- (Clytia hemisphaerica)
AAAAAGAAAAGTTATACCAAATACAAAAATTTTAAATTCGGAATTCCAGT
TTTTCATTCCTATGGTCACAGGGGAGATTGTCAGGTAATTGGGCTATGCA
GTGATAATACTTGATCAAATATTGAAGGATGTAAAAGACAAAGATTTGAG
TGTTCACATCATATATGATATTGCTTGTGTACTAAAAGCCCATTTGCAGT
TGCGTTCAAAAAGGAAGACCAACAAGCTCAGCATTACTGGCATATTTGGA
ATGTCTTGTCGACATGAATTCCCCAAGCTGTTTCTGAGCGTGAGACATGG
TGAAAGAAAAAGAAAAGTTATACCAAATACAAAAATTTTAAATTCGGAAT
TCCAGTTTTTCATTCCTATGGTCACAGGGGAGATTGTCAGGTAATTGGGC
TATGCAGTGATAATACTTGATCAAATATTGAAGGATGTAAAAGACAAAGA
TTTGAGTGTTCACATCATATATGATATTGCTTGTGTACTAAAAGCCCATT
TGCAGTTGCGTTCAAAAAGGAAGACCAACAAGCTCAGCATTACTGGCATA
TTTGGAATGTCTTGTCGACATGAATTCCCCAAGCTGTTTCTGAGCGTGAG
ACATGGTGAAAGAAAAAGAAAAGTTATACCAAATACAAAAATTTTAAATT
CGGAATTCCAGTTTTTCATTCCTATGGTCACAGGGGAGATTGTCAGGTAA
TTGGGCTATGCAGTGATAATACTTGATCAAATATTGAAGGATGTAAAAGA
CAAAGATTTGAGTGTTCACATCATATATGATATTGCTTGTGTACTAAAAG
CCCATTTGCAGTTGCGTTCAAAAAGGAAGACCAACAAGCTCAGCATTACT
GGCATATTTGGAATGTCTTGTCGACATGAATTCCCCAAGCTGTTTCTGAG
CGTGAGACATGGTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010582XLOC_010582Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018889-proteinTCONS_00018889-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018889-exon-sc0000310-1575043694:321296..321402TCONS_00018889-exon-sc0000310-1575043694:321296..321402Clytia hemisphaericaexon
TCONS_00018889-exon-sc0000310-1575043694:320872..320983TCONS_00018889-exon-sc0000310-1575043694:320872..320983Clytia hemisphaericaexon
TCONS_00018889-exon-sc0000310-1575043694:320627..320713TCONS_00018889-exon-sc0000310-1575043694:320627..320713Clytia hemisphaericaexon
TCONS_00018889-exon-sc0000310-1510915933:321296..321402TCONS_00018889-exon-sc0000310-1510915933:321296..321402Clytia hemisphaericaexon
TCONS_00018889-exon-sc0000310-1510915933:320872..320983TCONS_00018889-exon-sc0000310-1510915933:320872..320983Clytia hemisphaericaexon
TCONS_00018889-exon-sc0000310-1510915933:320627..320713TCONS_00018889-exon-sc0000310-1510915933:320627..320713Clytia hemisphaericaexon
TCONS_00018889-exon-sc0000310-1491911889:321296..321402TCONS_00018889-exon-sc0000310-1491911889:321296..321402Clytia hemisphaericaexon
TCONS_00018889-exon-sc0000310-1491911889:320872..320983TCONS_00018889-exon-sc0000310-1491911889:320872..320983Clytia hemisphaericaexon
TCONS_00018889-exon-sc0000310-1491911889:320627..320713TCONS_00018889-exon-sc0000310-1491911889:320627..320713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000310supercontigsc0000310:320627..321402 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	17.744	22.2008	9.86792	18.4764	8.00787	10.3005	15.1821	11.4406	12.1539	21.4574	0	0	0	0	0	0	0	0	0	0	0.78483	8.05509	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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