TCONS_00018878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018878
Unique NameTCONS_00018878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018878 ID=TCONS_00018878|Name=TCONS_00018878|organism=Clytia hemisphaerica|type=transcript|length=359bp
AAACATTGTTTGCTGATGACACATGTCTGTTCATGAGTCATTCAGATCCT
GAAATACTTCAAAATCTCGTAAATACAGAACTCAAAAAAGTATCTGACTG
GCTTGTTGCAAATCAACTAACTTTAAATATCTCCAAGTCCAACTATATCA
TCTTTGGTGAAAACAAAACAGCTAACTTTCATGTCTCTATTTCAGGTCAA
TCTCTAAACAAGGTTAACGAAACAAAATATCTGGGTGTTGTTATTGATCA
CAAGTTGAACTGGAAAGAACATCTGAAAAGGCTACATACTAGAATCAAGC
AAAATACAGGTATATTACGAAAGGTAGGATGGTTCCTTCCACGAGAGAAC
CTTATATAT
Run BLAST on NCBI

protein sequence of TCONS_00018878-protein

>TCONS_00018878-protein ID=TCONS_00018878-protein|Name=TCONS_00018878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
TLFADDTCLFMSHSDPEILQNLVNTELKKVSDWLVANQLTLNISKSNYII
FGENKTANFHVSISGQSLNKVNETKYLGVVIDHKLNWKEHLKRLHTRIKQ
NTGILRKVGWFLPRENLIY
Run BLAST on NCBI

transcript from alignment at sc0000309:301499..301857

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018878 ID=TCONS_00018878|Name=TCONS_00018878|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at sc0000309:301499..301857 (Clytia hemisphaerica)
ATATATAAGGTTCTCTCGTGGAAGGAACCATCCTACCTTTCGTAATATAC
CTGTATTTTGCTTGATTCTAGTATGTAGCCTTTTCAGATGTTCTTTCCAG
TTCAACTTGTGATCAATAACAACACCCAGATATTTTGTTTCGTTAACCTT
GTTTAGAGATTGACCTGAAATAGAGACATGAAAGTTAGCTGTTTTGTTTT
CACCAAAGATGATATAGTTGGACTTGGAGATATTTAAAGTTAGTTGATTT
GCAACAAGCCAGTCAGATACTTTTTTGAGTTCTGTATTTACGAGATTTTG
AAGTATTTCAGGATCTGAATGACTCATGAACAGACATGTGTCATCAGCAA
ACAATGTTT

Coding sequence (CDS) from alignment at sc0000309:301499..301857

>TCONS_00018878 ID=TCONS_00018878|Name=TCONS_00018878|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000309:301499..301857 (Clytia hemisphaerica)
ATATATAAGGTTCTCTCGTGGAAGGAACCATCCTACCTTTCGTAATATAC
CTGTATTTTGCTTGATTCTAGTATGTAGCCTTTTCAGATGTTCTTTCCAG
TTCAACTTGTGATCAATAACAACACCCAGATATTTTGTTTCGTTAACCTT
GTTTAGAGATTGACCTGAAATAGAGACATGAAAGTTAGCTGTTTTGTTTT
CACCAAAGATGATATAGTTGGACTTGGAGATATTTAAAGTTAGTTGATTT
GCAACAAGCCAGTCAGATACTTTTTTGAGTTCTGTATTTACGAGATTTTG
AAGTATTTCAGGATCTGAATGACTCATGAACAGACATGTGTCATCAGCAA
ACAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010576XLOC_010576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018878-exon-sc0000309-1491911889:301499..301857TCONS_00018878-exon-sc0000309-1491911889:301499..301857Clytia hemisphaericaexon
TCONS_00018878-exon-sc0000309-1510915933:301499..301857TCONS_00018878-exon-sc0000309-1510915933:301499..301857Clytia hemisphaericaexon
TCONS_00018878-exon-sc0000309-1575043694:301499..301857TCONS_00018878-exon-sc0000309-1575043694:301499..301857Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018878-proteinTCONS_00018878-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:301499..301857 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.53107	1.85587	3.29386	1.02264	6.07674	4.67063	9.55176	9.46305	2.35893	4.74084	3.74523	4.35179	1.91143	0.692384	2.31526	0	0.328349	0.929216	0.584812	0.526194	1.26274	2.51804	0	2.5047	7.98164	9.0917	0.794892	0.1806	0	0.592191
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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