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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018870 ID=TCONS_00018870|Name=TCONS_00018870|organism=Clytia hemisphaerica|type=transcript|length=1251bp
aagatgTGGTGGTTCTCTTCAAAGCTTGACTCAAGAGGATTCATTCACAG
AATTTCCCCTGTCCACTTCTTCTCTTTCAGTCTGGTCTGGCgccataata
gacctttttgcctttccatccaccatattgaattgtatgcaaaaattatt
gtggccaaattgccgtggtaagattgcattgaaaatatgcaaaaagaaag
tattaatataaaacttacatgcataatttgcATTacattaaagtgtaatc
ttgtagaagaaaaattaaatttgcttttcttgaaaactaataataataat
tatgacCAGTCATCATGAAACGTATGAAAACCCACCTAACTACATTCGAC
TTAATTCCCGAAGAACAAAAGGGTGGGATCTCAGGTAACCAAGGGACAGT
AGACCAACTCTTAATTGACAACATGATCCTGGAGAAtgcaagaaaatcaa
aacacaaCCTATCGACAGCCTGGATTGATTATCGAAAAGCTTTTGATTCT
GTCCCACATGGCTGGCTAAAAAGATCTCTCCAGATACACAAATTTCCTGA
GAAACTCATCAACTTCTTCACCACCACCATGACCAAATGGAAAACCACCC
TCAACATCCCAACGCAAGACACTACCGTATCTTCCGATCCGATCAACATC
CACAACGGTATCTTCCAAGATGATTGTCCTTCTGGGTTAAACTTTGTCAT
AAGCCTGTTACCTCTATCGTGGCTCATCAAAAGATCGTCGATCGGCTACG
CTATAGGCCCCAGAAACAACCGTACTGTAGTCAGTCATCTTCTATGCGAA
CTGCGATGAACGACTTGAAGACCTTCTCGAAATTGTATCCATGTTCAGCA
ATGATATTTGTATGAGTTTCGGTTTGGATAAATGTAATACATTGTCGATA
AGAGGAGGAAAGCTGACAAAAGGGAATGACATCACCCTCCACACCGAGGA
AACCATCAAAGCTCTTGATCTCCGCGAACAGTACAAGTATCTTGGTATGC
TtcaatcgaacacaattgacaaaaagaatatGAGAAATAAATTTCGAACA
GAATACTTTCAACGGGTGAAGAAGATCTTAAAATCATCCCTCAATAGTAA
AAACACTATTCAAGCCATAAATACGTACGCAATACCGGCATTGTCTTACA
GATTCAGAGTCCTTGACtgctcaagtgagttacggcatgtccaaagcaaa
agtgaaccagttccactcactttcaaaatgtcaaacatagctggaaagaa
g Run BLAST on NCBI protein sequence of TCONS_00018870-protein >TCONS_00018870-protein ID=TCONS_00018870-protein|Name=TCONS_00018870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MKRMKTHLTTFDLIPEEQKGGISGNQGTVDQLLIDNMILENARKSKHNLS
TAWIDYRKAFDSVPHGWLKRSLQIHKFPEKLINFFTTTMTKWKTTLNIPT
QDTTVSSDPINIHNGIFQDDCPSGLNFVISLLPLSWLIKRSSIGYAIGPR
NNRTVVSHLLCELR Run BLAST on NCBI transcript from alignment at sc0000309:146418..147668 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018870 ID=TCONS_00018870|Name=TCONS_00018870|organism=Clytia hemisphaerica|type=transcript|length=1251bp|location=Sequence derived from alignment at sc0000309:146418..147668 (Clytia hemisphaerica)
cttctttccagctatgtttgacattttgaaagtgagtggaactggttcac
ttttgctttggacatgccgtaactcacttgagcaGTCAAGGACTCTGAAT
CTGTAAGACAATGCCGGTATTGCGTACGTATTTATGGCTTGAATAGTGTT
TTTACTATTGAGGGATGATTTTAAGATCTTCTTCACCCGTTGAAAGTATT
CTGTTCGAAATTTATTTCTCatattctttttgtcaattgtgttcgattga
AGCATACCAAGATACTTGTACTGTTCGCGGAGATCAAGAGCTTTGATGGT
TTCCTCGGTGTGGAGGGTGATGTCATTCCCTTTTGTCAGCTTTCCTCCTC
TTATCGACAATGTATTACATTTATCCAAACCGAAACTCATACAAATATCA
TTGCTGAACATGGATACAATTTCGAGAAGGTCTTCAAGTCGTTCATCGCA
GTTCGCATAGAAGATGACTGACTACAGTACGGTTGTTTCTGGGGCCTATA
GCGTAGCCGATCGACGATCTTTTGATGAGCCACGATAGAGGTAACAGGCT
TATGACAAAGTTTAACCCAGAAGGACAATCATCTTGGAAGATACCGTTGT
GGATGTTGATCGGATCGGAAGATACGGTAGTGTCTTGCGTTGGGATGTTG
AGGGTGGTTTTCCATTTGGTCATGGTGGTGGTGAAGAAGTTGATGAGTTT
CTCAGGAAATTTGTGTATCTGGAGAGATCTTTTTAGCCAGCCATGTGGGA
CAGAATCAAAAGCTTTTCGATAATCAATCCAGGCTGTCGATAGGttgtgt
tttgattttcttgcaTTCTCCAGGATCATGTTGTCAATTAAGAGTTGGTC
TACTGTCCCTTGGTTACCTGAGATCCCACCCTTTTGTTCTTCGGGAATTA
AGTCGAATGTAGTTAGGTGGGTTTTCATACGTTTCATGATGACTGgtcat
aattattattattagttttcaagaaaagcaaatttaatttttcttctaca
agattacactttaatgtAATgcaaattatgcatgtaagttttatattaat
actttctttttgcatattttcaatgcaatcttaccacggcaatttggcca
caataatttttgcatacaattcaatatggtggatggaaaggcaaaaaggt
ctattatggcGCCAGACCAGACTGAAAGAGAAGAAGTGGACAGGGGAAAT
TCTGTGAATGAATCCTCTTGAGTCAAGCTTTGAAGAGAACCACCAcatct
t Coding sequence (CDS) from alignment at sc0000309:146418..147668 >TCONS_00018870 ID=TCONS_00018870|Name=TCONS_00018870|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0000309:146418..147668 (Clytia hemisphaerica)
TCATCGCAGTTCGCATAGAAGATGACTGACTACAGTACGGTTGTTTCTGG
GGCCTATAGCGTAGCCGATCGACGATCTTTTGATGAGCCACGATAGAGGT
AACAGGCTTATGACAAAGTTTAACCCAGAAGGACAATCATCTTGGAAGAT
ACCGTTGTGGATGTTGATCGGATCGGAAGATACGGTAGTGTCTTGCGTTG
GGATGTTGAGGGTGGTTTTCCATTTGGTCATGGTGGTGGTGAAGAAGTTG
ATGAGTTTCTCAGGAAATTTGTGTATCTGGAGAGATCTTTTTAGCCAGCC
ATGTGGGACAGAATCAAAAGCTTTTCGATAATCAATCCAGGCTGTCGATA
GGttgtgttttgattttcttgcaTTCTCCAGGATCATGTTGTCAATTAAG
AGTTGGTCTACTGTCCCTTGGTTACCTGAGATCCCACCCTTTTGTTCTTC
GGGAATTAAGTCGAATGTAGTTAGGTGGGTTTTCATACGTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018870-exon-sc0000309-1491911889:146418..147668 | TCONS_00018870-exon-sc0000309-1491911889:146418..147668 | Clytia hemisphaerica | exon |
| TCONS_00018870-exon-sc0000309-1510915933:146418..147668 | TCONS_00018870-exon-sc0000309-1510915933:146418..147668 | Clytia hemisphaerica | exon |
| TCONS_00018870-exon-sc0000309-1575043694:146418..147668 | TCONS_00018870-exon-sc0000309-1575043694:146418..147668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:146418..147668 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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