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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018868 ID=TCONS_00018868|Name=TCONS_00018868|organism=Clytia hemisphaerica|type=transcript|length=1679bp
ACCAACAGTAAATTATGCTCAGTTTATGCACTACTCAATATCCAGCTTTA
GTGTTTTAATTGAGTTTTAGTTCCTcatccaatttttttgaattattttc
cagcaaaaagaaaaaaattagaagatGGCATTTGGATTGTATAGCCTGTT
AGAGGCAGTCCTTCTGGTTGTCAATGCAATGGCAGTTTTAAATGAAGAGA
GATTTTTATCAAAGATTGGGTGGGGAACAGATCAAATGGCTGCTTATGGA
GAACAACCAAGTGCAAAACAACAATTATTAAATTTGATACGATCAGTTAG
GACAGTCATGAGGATACCATTGATTggagtcaatttttttgttattatcg
TCAAACTGCtgatgggataaacttttgttAAACTGAACTCTCTAGCGAAA
GTTCAAATAAACTCCTTGTTTTGCTTTCTTTCTAGTGCTCTTTAGTTTTT
GATATATAATAGATATTTTAGAGTTTTGTAATGAGGGGAAGTGAAAGATG
TTGTActtaaaactttcatttttttcatttttttagcaGATGGGAATTAA
CAGAATCTACTATGAAGAATTGTTCCAAAATTGTGCTCGTTTGGGGGAGG
AGGATGAGAAAATTGCTCTTTTTCATTTATATAGACTGATGTGCAACCAA
AAGGTTAAGATGCCTCAAATGATATCCTTTAAAATAGTTGCTGCACTTTT
TTGTAAAGCTGAAATCTTTTTAATGTTATTTTAAAATTCGTTTTTCTTCA
ATGTTTTATTactgtttgttttgaatttacgttttttaaatttattgatA
ATTGAATTATCAAGCTTTCTTTTTTCGCTCTTTTTCCTTTCATTCTATAG
GAAAGACTAGAAAATGAGTCAAATCCACATCTTGAAGACAGGCTATGGAA
ACGAAGACGAGAAAGGTATATATCATGCAAGTGCCACGTGTACACTTGTA
CTCAATGATGAAATGAAGATTATTGTTGATCCTGGTGGTGCTTGGGAAAG
AAAAGACATTATCGAAAGGCTGTTGAAATTTGGTGTAGATTGTGAAGATA
TTGATATAGTTGTTGGCACACATGGCCACTCTGATCATATTGGTAATTTG
AACTTGTTCCCAAAAGCAAAACAAATTGTTGGTTTTGATATAAATACTGG
TGATCATTATGAAACAGATCATGATTTCAAATCTGGTCTTTCTTATCCCT
TGATAGAAGGCAAGTTAGAGGTTTTACCAACTCCTGGTCACATGCACCAC
GATGTATCATTGATTGTATATGATAGTTTGAATTCTGAACATGGTGTTGT
TGGGATTTGTGGTGATTTATTTGAGAACAGTGAAGATGATGGAGTCTGGC
AAGAAATCAGTGAGAATGTGGAATTGCAATCAAGGAATCGAAATGTGATT
TTGGATTTGTGCCATCATATTGTTCCTGGTCATGGCAACATGTTTAAAAA
CCCTCtcaagaaatcataaatcacatTGAATGTCCACATGTAGTTTTGAT
TCACTAATTATTACATTAATTTGTTAATCTATTTCAAGACTTTTCGATAA
GaaagattttataaaaacaatctgTATCAGATATAGCTTATGACGTAATC
TCAAGCAAGTTAGTGTTAGAAAAATGATTGCTAAAAACCCTGATGGGAAT
AAGTCAAAATCGAATTAATAAGAATTAAG Run BLAST on NCBI protein sequence of TCONS_00018868-protein >TCONS_00018868-protein ID=TCONS_00018868-protein|Name=TCONS_00018868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MSQIHILKTGYGNEDEKGIYHASATCTLVLNDEMKIIVDPGGAWERKDII
ERLLKFGVDCEDIDIVVGTHGHSDHIGNLNLFPKAKQIVGFDINTGDHYE
TDHDFKSGLSYPLIEGKLEVLPTPGHMHHDVSLIVYDSLNSEHGVVGICG
DLFENSEDDGVWQEISENVELQSRNRNVILDLCHHIVPGHGNMFKNPLKK
S Run BLAST on NCBI transcript from alignment at sc0000309:140008..141686 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018868 ID=TCONS_00018868|Name=TCONS_00018868|organism=Clytia hemisphaerica|type=transcript|length=1679bp|location=Sequence derived from alignment at sc0000309:140008..141686 (Clytia hemisphaerica)
CTTAATTCTTATTAATTCGATTTTGACTTATTCCCATCAGGGTTTTTAGC
AATCATTTTTCTAACACTAACTTGCTTGAGATTACGTCATAAGCTATATC
TGATAcagattgtttttataaaatctttCTTATCGAAAAGTCTTGAAATA
GATTAACAAATTAATGTAATAATTAGTGAATCAAAACTACATGTGGACAT
TCAatgtgatttatgatttcttgaGAGGGTTTTTAAACATGTTGCCATGA
CCAGGAACAATATGATGGCACAAATCCAAAATCACATTTCGATTCCTTGA
TTGCAATTCCACATTCTCACTGATTTCTTGCCAGACTCCATCATCTTCAC
TGTTCTCAAATAAATCACCACAAATCCCAACAACACCATGTTCAGAATTC
AAACTATCATATACAATCAATGATACATCGTGGTGCATGTGACCAGGAGT
TGGTAAAACCTCTAACTTGCCTTCTATCAAGGGATAAGAAAGACCAGATT
TGAAATCATGATCTGTTTCATAATGATCACCAGTATTTATATCAAAACCA
ACAATTTGTTTTGCTTTTGGGAACAAGTTCAAATTACCAATATGATCAGA
GTGGCCATGTGTGCCAACAACTATATCAATATCTTCACAATCTACACCAA
ATTTCAACAGCCTTTCGATAATGTCTTTTCTTTCCCAAGCACCACCAGGA
TCAACAATAATCTTCATTTCATCATTGAGTACAAGTGTACACGTGGCACT
TGCATGATATATACCTTTCTCGTCTTCGTTTCCATAGCCTGTCTTCAAGA
TGTGGATTTGACTCATTTTCTAGTCTTTCCTATAGAATGAAAGGAAAAAG
AGCGAAAAAAGAAAGCTTGATAATTCAATTatcaataaatttaaaaaacg
taaattcaaaacaaacagtAATAAAACATTGAAGAAAAACGAATTTTAAA
ATAACATTAAAAAGATTTCAGCTTTACAAAAAAGTGCAGCAACTATTTTA
AAGGATATCATTTGAGGCATCTTAACCTTTTGGTTGCACATCAGTCTATA
TAAATGAAAAAGAGCAATTTTCTCATCCTCCTCCCCCAAACGAGCACAAT
TTTGGAACAATTCTTCATAGTAGATTCTGTTAATTCCCATCtgctaaaaa
aatgaaaaaaatgaaagttttaagTACAACATCTTTCACTTCCCCTCATT
ACAAAACTCTAAAATATCTATTATATATCAAAAACTAAAGAGCACTAGAA
AGAAAGCAAAACAAGGAGTTTATTTGAACTTTCGCTAGAGAGTTCAGTTT
aacaaaagtttatcccatcaGCAGTTTGAcgataataacaaaaaaattga
ctccAATCAATGGTATCCTCATGACTGTCCTAACTGATCGTATCAAATTT
AATAATTGTTGTTTTGCACTTGGTTGTTCTCCATAAGCAGCCATTTGATC
TGTTCCCCACCCAATCTTTGATAAAAATCTCTCTTCATTTAAAACTGCCA
TTGCATTGACAACCAGAAGGACTGCCTCTAACAGGCTATACAATCCAAAT
GCCatcttctaatttttttctttttgctggaaaataattcaaaaaaattg
gatgAGGAACTAAAACTCAATTAAAACACTAAAGCTGGATATTGAGTAGT
GCATAAACTGAGCATAATTTACTGTTGGT Coding sequence (CDS) from alignment at sc0000309:140008..141686 >TCONS_00018868 ID=TCONS_00018868|Name=TCONS_00018868|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000309:140008..141686 (Clytia hemisphaerica)
ttatgatttcttgaGAGGGTTTTTAAACATGTTGCCATGACCAGGAACAA
TATGATGGCACAAATCCAAAATCACATTTCGATTCCTTGATTGCAATTCC
ACATTCTCACTGATTTCTTGCCAGACTCCATCATCTTCACTGTTCTCAAA
TAAATCACCACAAATCCCAACAACACCATGTTCAGAATTCAAACTATCAT
ATACAATCAATGATACATCGTGGTGCATGTGACCAGGAGTTGGTAAAACC
TCTAACTTGCCTTCTATCAAGGGATAAGAAAGACCAGATTTGAAATCATG
ATCTGTTTCATAATGATCACCAGTATTTATATCAAAACCAACAATTTGTT
TTGCTTTTGGGAACAAGTTCAAATTACCAATATGATCAGAGTGGCCATGT
GTGCCAACAACTATATCAATATCTTCACAATCTACACCAAATTTCAACAG
CCTTTCGATAATGTCTTTTCTTTCCCAAGCACCACCAGGATCAACAATAA
TCTTCATTTCATCATTGAGTACAAGTGTACACGTGGCACTTGCATGATAT
ATACCTTTCTCGTCTTCGTTTCCATAGCCTGTCTTCAAGATGTGGATTTG
ACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018868-exon-sc0000309-1491911889:140008..141686 | TCONS_00018868-exon-sc0000309-1491911889:140008..141686 | Clytia hemisphaerica | exon |
| TCONS_00018868-exon-sc0000309-1510915933:140008..141686 | TCONS_00018868-exon-sc0000309-1510915933:140008..141686 | Clytia hemisphaerica | exon |
| TCONS_00018868-exon-sc0000309-1575043694:140008..141686 | TCONS_00018868-exon-sc0000309-1575043694:140008..141686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:140008..141686 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001279 | Metallo-B-lactamas |
Blast
BLAST of TCONS_00018868 vs. Swiss-Prot (Human)
Match: MBLC1 (Metallo-beta-lactamase domain-containing protein 1 OS=Homo sapiens GN=MBLAC1 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.450e-25 Identity = 67/162 (41.36%), Postives = 87/162 (53.70%), Query Frame = 3
Query: 966 KIIVDPGGAWERKDIIERLLKFGVDCEDIDIVVGTHGHSDHIGNLNLFPKAKQIVGFDINTGDHYETDHDFKSGLSYPLIEGKLEVLPTPGH-MHHDVSLIVYDSLNSEHGVVGICGDLFENSEDDGVWQEISENVELQSRNRNVILDLCHHIVPGHGNMFK 1448
I+VD GG W R+ ++ L GV D+ +VVGTHGHSDHIGNL LFP A +V D H G L G LEV TPGH DVS++V + G V + GD+FE D+ WQ +SE+ Q R+R +L + +VPGHG F+
Sbjct: 79 PILVDTGGPWAREALLGALAGQGVAPGDVTLVVGTHGHSDHIGNLGLFPGAALLVSHDFCLPGGRYLPHGLGEGQPLRLGPG-LEVWATPGHGGQRDVSVVVA---GTALGTVVVAGDVFERDGDEDSWQALSEDPAAQERSRKRVLVVADVVVPGHGPPFR 236
The following BLAST results are available for this feature:
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