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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018863 ID=TCONS_00018863|Name=TCONS_00018863|organism=Clytia hemisphaerica|type=transcript|length=978bp
GTATtctggaaacactacatttttttattctcGCCAAAATGCATAAGAAA
ATATAATACAAATAAAAACATATACAAAAGTCCTATCAAAAAAGCAGCCA
AATATTACTGGATACATACCGTAGGTACCAGTGTGTAAACTCTACAagat
ttaaattattttgtttcacTTTTCTCATACAAATGTGTTTCGACATTATA
CTTGCAATCATAGCCTAAATATCCGTATTTTGACTCCAAAAAGGTGAGCG
TATCATTTGGCACTTGGTACCATTCTCCTTCGTATCTCAATTTTTtgctc
gttggaaagatagCTGAGAGTGGACATCGCAGATGACCCTCAGAGCCATG
TAAACAAATCATGACGTCATTCTCAACGCATGTGTAAAACTGAATATCGA
GACTGACATGATAGTAATTTGAGGCTCGGAAAGGTTTTGTACCGTAAAGG
GGATcgtatatttcaattttttctgcatAATCAAAATCCAAGTTTTCTTT
ATTCAAACTGACAGGTCGAGCTTTGTAGACCGTCCCTTCCAAGAAAGTGT
TGAGCtgttgaagtaatttttctttacgGCCATCCTTTTGAACAAGGCAC
GGGTCAGTTGGGTAGTTGGGGAAAAAAACACCCATATCAAAATCGTCATC
CCAAGCAATCATTTTCCCGTTATCTCTGTACGCAGCTAGAAGTGTCCCAT
TGTCTAAGAACCAATCATATTTATGGTTCTGTAAAAACTCTTTGATTTTA
AGAGATAGCTTGTTACGTAGCGGTCCGTATTTTGAGGCCCTTTCACTCAA
AGTTTGTATATCCTCTCGTGTGTAACAAATATTTATGTTTTCCATCATTT
CAATTTATTGGTTTCTTCTTTACGAACCTTGCAGTAATTTCTTTGTTATC
ATTTGTATTTTTGctgttaaaaaagaaaaaaaacgatgCATTAAAATTGT
CACCGTACAAACTTcccttaaaaaaatt Run BLAST on NCBI protein sequence of TCONS_00018863-protein >TCONS_00018863-protein ID=TCONS_00018863-protein|Name=TCONS_00018863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MMENINICYTREDIQTLSERASKYGPLRNKLSLKIKEFLQNHKYDWFLDN
GTLLAAYRDNGKMIAWDDDFDMGVFFPNYPTDPCLVQKDGRKEKLLQQLN
TFLEGTVYKARPVSLNKENLDFDYAEKIEIYDPLYGTKPFRASNYYHVSL
DIQFYTCVENDVMICLHGSEGHLRCPLSAIFPTSKKLRYEGEWYQVPNDT
LTFLESKYGYLGYDCKYNVETHLYEKSETK Run BLAST on NCBI transcript from alignment at sc0000309:32032..33009 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018863 ID=TCONS_00018863|Name=TCONS_00018863|organism=Clytia hemisphaerica|type=transcript|length=978bp|location=Sequence derived from alignment at sc0000309:32032..33009 (Clytia hemisphaerica)
aatttttttaagggAAGTTTGTACGGTGACAATTTTAATGcatcgttttt
tttcttttttaacagCAAAAATACAAATGATAACAAAGAAATTACTGCAA
GGTTCGTAAAGAAGAAACCAATAAATTGAAATGATGGAAAACATAAATAT
TTGTTACACACGAGAGGATATACAAACTTTGAGTGAAAGGGCCTCAAAAT
ACGGACCGCTACGTAACAAGCTATCTCTTAAAATCAAAGAGTTTTTACAG
AACCATAAATATGATTGGTTCTTAGACAATGGGACACTTCTAGCTGCGTA
CAGAGATAACGGGAAAATGATTGCTTGGGATGACGATTTTGATATGGGTG
TTTTTTTCCCCAACTACCCAACTGACCCGTGCCTTGTTCAAAAGGATGGC
cgtaaagaaaaattacttcaacaGCTCAACACTTTCTTGGAAGGGACGGT
CTACAAAGCTCGACCTGTCAGTTTGAATAAAGAAAACTTGGATTTTGATT
atgcagaaaaaattgaaatatacgATCCCCTTTACGGTACAAAACCTTTC
CGAGCCTCAAATTACTATCATGTCAGTCTCGATATTCAGTTTTACACATG
CGTTGAGAATGACGTCATGATTTGTTTACATGGCTCTGAGGGTCATCTGC
GATGTCCACTCTCAGctatctttccaacgagcaAAAAATTGAGATACGAA
GGAGAATGGTACCAAGTGCCAAATGATACGCTCACCTTTTTGGAGTCAAA
ATACGGATATTTAGGCTATGATTGCAAGTATAATGTCGAAACACATTTGT
ATGAGAAAAgtgaaacaaaataatttaaatctTGTAGAGTTTACACACTG
GTACCTACGGTATGTATCCAGTAATATTTGGCTGCTTTTTTGATAGGACT
TTTGTATATGTTTTTATTTGTATTATATTTTCTTATGCATTTTGGCgaga
ataaaaaaatgtagtgtttccagaATAC Coding sequence (CDS) from alignment at sc0000309:32032..33009 >TCONS_00018863 ID=TCONS_00018863|Name=TCONS_00018863|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at sc0000309:32032..33009 (Clytia hemisphaerica)
ATGATGGAAAACATAAATATTTGTTACACACGAGAGGATATACAAACTTT
GAGTGAAAGGGCCTCAAAATACGGACCGCTACGTAACAAGCTATCTCTTA
AAATCAAAGAGTTTTTACAGAACCATAAATATGATTGGTTCTTAGACAAT
GGGACACTTCTAGCTGCGTACAGAGATAACGGGAAAATGATTGCTTGGGA
TGACGATTTTGATATGGGTGTTTTTTTCCCCAACTACCCAACTGACCCGT
GCCTTGTTCAAAAGGATGGCcgtaaagaaaaattacttcaacaGCTCAAC
ACTTTCTTGGAAGGGACGGTCTACAAAGCTCGACCTGTCAGTTTGAATAA
AGAAAACTTGGATTTTGATTatgcagaaaaaattgaaatatacgATCCCC
TTTACGGTACAAAACCTTTCCGAGCCTCAAATTACTATCATGTCAGTCTC
GATATTCAGTTTTACACATGCGTTGAGAATGACGTCATGATTTGTTTACA
TGGCTCTGAGGGTCATCTGCGATGTCCACTCTCAGctatctttccaacga
gcaAAAAATTGAGATACGAAGGAGAATGGTACCAAGTGCCAAATGATACG
CTCACCTTTTTGGAGTCAAAATACGGATATTTAGGCTATGATTGCAAGTA
TAATGTCGAAACACATTTGTATGAGAAAAgtgaaacaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018863-exon-sc0000309-1491911889:32032..33009 | TCONS_00018863-exon-sc0000309-1491911889:32032..33009 | Clytia hemisphaerica | exon |
| TCONS_00018863-exon-sc0000309-1510915933:32032..33009 | TCONS_00018863-exon-sc0000309-1510915933:32032..33009 | Clytia hemisphaerica | exon |
| TCONS_00018863-exon-sc0000309-1575043694:32032..33009 | TCONS_00018863-exon-sc0000309-1575043694:32032..33009 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:32032..33009 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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