TCONS_00018853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018853
Unique NameTCONS_00018853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018853 ID=TCONS_00018853|Name=TCONS_00018853|organism=Clytia hemisphaerica|type=transcript|length=1790bp
TCAGATTACAGTAAGGCAACATCTTCAATGGTCTTGACTTGTTTTGTTGC
ATGGGTGTCATCAGCAAAGGACTTCACAAAGATGTTCAAGATATCTTTGT
CAGTATCTCCAATGAGTATAAGAAAGATCAAAGGACCCAGGACACTTCCT
TGAGGGACTCCtgaaaagagagagagagagagagaagagaagctgaccct
ccgatatcatcggaccgggccctatcccgggatagtttcctgcccctaga
tagggaaatcacagcgcttaccagacattgtacCCTGCgctcgcgacaca
tcagagccgtACTGTATTGATGATGATACTCGAACAGTACGGGAGAACCT
TACATTCTCGCAGGTACTGAACATATGAGTACCATCACCACACCACATTC
AATGTCCAGCATATCTGCCCATACTCTTatatcagagtgatggtacccta
ttcccctcacatggtatgggttgacccgggccaaggtacattcacttgcc
aagtgaatcgcagCACCGAGTAAgaatcgaaccctgacctccAGCGCGGA
AGTCAGGATCGATGACCACTTCACTACTGCGCCTGAAAAGACATATTTTG
ATTACATAGCATTTACGAGCACTGACTGCTTTCTTCCTGTAAGAAAGGAA
TTGAGCCATTGTAGTATTTTTCCATCAATTCCTAGTTGCTTTATCTTGTG
TAGGACAATTTCATGGTCAACTTTATTGAAGGCTTTCGAGACTTTCGACG
CATCAACATCTACCGTGAATTTGGGTAACTTGCATGAGGGAAAAAAGGGT
TCATGGTCGTTATCAtcattattattgttgttatttcaggtttgattttt
atattttaaaggAAGGACACTTGGAGATCCATAACATATAATAAAAACCA
TTAAAGAAAagccattttaccaaaaaaaatatGCAGCAGGAAAAAGAGGA
GAATGTCATTGCAACGTCACtgcaaaatttgattggtcgcgTCAGTGATA
TCAAGATGTCcatccaaaatttcatgtttaaatTGGAACATGAAACTCTC
TCTTGGCCTCAGATGTTGGACAATTTCGCCTTGTTATCGGGTCAAATCAG
CACATTGAACAAACTTCTGAAGAACGATCGAATGCCAGTGTTGAGGAATC
TTTGCATTTTGCCACTGATGGTCAGTCAAGAACGTGACACTGAGATGGAG
gAAATGACAGAAAATCGCATACCAGTTGTGACTCATGAAGTGGTACCGGA
TGCATTGCGAACGAAATACGAACCGGACGTCGAGAAAGTAGAGGAAGAAC
TCACTTTACAATCCAACTCCATCTCTGTTGATATGGCTAGGTCTCAAGTA
GTAGCGTTGAACGATCTGATTGGCTCCATGTTGGATTTGATACAAAACAG
TCGCGATTGGGAAACGGAAAGTTCGGTGGAGCAAGCAGACTTAGCGCCGT
CAGCAAACGATACCAACATCCTCTTGGCTGCCATCACGCAAGGCTCTGGA
TTACGAAAGTCGTCGAGTTCACGAAGTTCCTCACAGCGAAGTTCATCGCA
ACAGCGAAGCAGTTCGCACCACCATTAGAATTTTAATGTAAAAtagcttt
ttcatttttattgtagtataatattttttaaattgtcaatatatacaaaa
tttaacgaataaaatcaaattgtaaaatttatttcatcTGAATTATCAGC
CTTTCCAAGAAACCGAAAACTTTTCGGGTTGATGGAGAAAAACTTGTTAG
GGTCGTAAAATGATTCTTCGTACGTGTTTAGCTTCCATGT
Run BLAST on NCBI

transcript from alignment at sc0000309:212863..223265-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018853 ID=TCONS_00018853|Name=TCONS_00018853|organism=Clytia hemisphaerica|type=transcript|length=10403bp|location=Sequence derived from alignment at sc0000309:212863..223265- (Clytia hemisphaerica)
TCAGATTACAGTAAGGCAACATCTTCAATGGTCTTGACTTGTTTTGTTGC
ATGGGTGTCATCAGCAAAGGACTTCACAAAGATGTTCAAGATATCTTTGT
CAGTATCTCCAATGAGTATAAGAAAGATCAAAGGACCCAGGACACTTCCT
TGAGGGACTCCTGAAAAGAGAGAGAGAGAGAGAGAAGAGAAGCTGACCCT
CCGATATCATCGGACCGGGCCCTATCCCGGGATAGTTTCCTGCCCCTAGA
TAGGGAAATCACAGCGCTTACCAGACATTGTACCCTGCGCTCGCGACACA
TCAGAGCCGTACTGTATTGATGATGATACTCGAACAGTACGGGAGAACCT
TACATTCTCGCAGGTACTGAACATATGAGTACCATCACCACACCACATTC
AATGTCCAGCATATCTGCCCATACTCTTATATCAGAGTGATGGTACCCTA
TTCCCCTCACATGGTATGGGTTGACCCGGGCCAAGGTACATTCACTTGCC
AAGTGAATCGCAGCACCGAGTAAGAATCGAACCCTGACCTCCAGCGCGGA
AGTCAGGATCGATGACCACTTCACTACTGCGCCTGAAAAGACATATTTTG
ATTACATAGCATTTACGAGCACTGACTGCTTTCTTCCTGTAAGAAAGGAA
TTGAGCCATTGTAGTATTTTTCCATCAATTCCTAGTTGCTTTATCTTGTG
TAGGACAATTTCATGGTCAACTTTATTGAAGGCTTTCGAGACTTTCGACG
CATCAACATCTACCGTGAATTTGGGTAACTTGCATGAGGGAAAAAAGGGT
TCATGGTCGTTATCATCATTATTATTGTTGTTATTTCAGGTTTGATTTTT
ATATTTTAAAGGAAGGACACTTGGAGATCCATAACATATAATAAAAACCA
TTAAAGAAAAGCCATTTTACCAAAAAAAATATGCAGCAGGTGTGTACAAT
TTTCCAAAAAAATCTGTTTTATAAGTAGTTACAAATTATTTTTGAAACAG
TTCTAAATGATAATAAAAGGTATATCAGTGTTGCAAATTTTTGGAATGTA
CAGGTATGTAGACGGAAAATCTGGCCATTGAGATAAACAAGAATGATTTT
GATCAAATAACTCCTCACTAAACCAAACGATTCAGAAAATCTAGTCGGTG
CTTTGGATCCCTACTTTGCAGGCGTTTTTAATTTGTAAAGCGTGTGTCAT
TTAGTTCATTTTCTTTAAAAACATTTCTTAAAGAGTACAATCTATACGTC
ACTGTTATTTTAGGAAAAAGAGGAGAATGTCATTGCAACGTCACTGCAAA
ATTTGATTGGTCGCGTCAGTGATATCAAGATGTCCATCCAAAATTTCATG
TTTAAATTGGAACATGAAACTCTCTCTTGGTAAGGGTCTTTTTTCATTAC
AATAAATTTCTTCTTTTTTGCTCATTGTGACTACCATGCTAAGCGTGCTT
AACGAAATAGAATAACAGTTGAATTGACTTTACTATTTTTTTATCATTAA
AATTCTGTAGGCCTCAGATGTTGGACAATTTCGCCTTGTTATCGGGTATT
TTACTACAATTACTTTATTAAAATTTATATTATACAATTTTTTGAGTGGG
ATCACAATTTAACAAAACATTAATTTTGCTTTATTGCGATCATTGCTTTC
ACAAAATAAGAGTTATATGTAATCAATACACCNTTTGATTTTTATATTTT
AAAGGAAGGACACTTGGAGATCCATAACATATAATAAAAACCATTAAAGA
AAAGCCATTTTACCAAAAAAAATATGCAGCAGGTGTGTACAATTTTCCAA
AAAAATCTGTTTTATAAGTAGTTACAAATTATTTTTGAAACAGTTCTAAA
TGATAATAAAAGGTATATCAGTGTTGCAAATTTTTGGAATGTACAGGTAT
GTAGACGGAAAATCTGGCCATTGAGATAAACAAGAATGATTTTGATCAAA
TAACTCCTCACTAAACCAAACGATTCAGAAAATCTAGTCGGTGCTTTGGA
TCCCTACTTTGCAGGCGTTTTTAATTTGTAAAGCGTGTGTCATTTAGTTC
ATTTTCTTTAAAAACATTTCTTAAAGAGTACAATCTATACGTCACTGTTA
TTTTAGGAAAAAGAAGAGAATGTCATTGCAACGTCACTGCAAAATTTGAT
TGGTCGCGTCAGTGATATCAAGATGTCCATCCAAAATTTCATGTTTAAAT
TGGAACATGAAACTCTCTCTTGGTAAGGGTCTTTTTTCATTACAATAAAT
TTCTTCTTTTTTGCTCATTGTGACTACCATGCTAAGCGTGCTTAACGAAA
TAGAATAACAGTTGAATTGACTTTACTATTTTTTTATCATTAAAATTCTG
TAGGCCTCAGATGTTGGACAATTTCGCCTTGTTATCGGGTATTTTACTAC
AATTACTTTATTAAAATTTATATTATACAATTTTTTGAGTGGGATCACAA
TTTAACAAAACATTAATTTTGCTTTATTGCGATCATTGCTTTCACAAAAT
AAGAGTTATATGTAATCAATACACCTTAAAGGAAGAAATTTTGGTGGGAA
TTTAATTTGGTGGTTGCAGGATTTGTTTTGGCCAAAATCGTTATCAAATA
AGCAAAAAAACCTGTTTTAAGGCCTGAAATGGCACCAATTTGGGGAATGC
GTTTTAAATAAAATAAATTTGGCAGGAATTTAGTTTGGCGGATGGAGGAA
AGAATAAACTTTGGCGGGAACTTAAATTGGCTAAATCAGCCAAATCAGCC
AAGTTTTCTTTCCGCCAAAATTTCTTCCTTTAAGGTATATAGTTTTTTGT
CAGCAACATTTTCGATCTAATTAGAATCCATGTAGGTGTGGTGTAATCAT
CTTTAAATTTATTTTACGGCAGTCAAATTTGAAGCGATTCTTTACAGTTA
TTATTTTTATCGGTAGGTCAAATCAGCACATTGAACAAACTTCTGAAGAA
CGATCGAATGCCAGTGTTGAGGAATCTTTGCATTTTGCCACTGATGGTCA
GTCAAGAACGTGACACTGAGATGGAGGTAAGTTTATCTTTACTTCAAAAG
TATTTTAAGACCTGCAGAGATCCCACTCGGCATGTTTTTCATGATTTTCA
TGATTTTTGCAAATTTGGCATTTTTCATGGTTTTTAGCATGTTTTGGATC
ATTTTGGCATGTTTTTCAGAGAATCATTAGGGAATTTTGTTTATATTGTC
TCTTCTCTGTCCTGATATTCAGATTCATTAAAGATAGCTCAAAATAGCAC
TTTCAGCCCCCAAAAATTCTAAAATTTTCTGACTTGCCCAACCATGGTGG
GCAACGTTAAATATTATCTTAAGTTTTCAATAAATACCATTGACAGAAAT
GTTAAAACAAGGATGTGTCAGGCAGGGGATCCATCTTTTCCAATGCTTCA
TAGGGAGGTGGGAGATTTCCCGAAAAAAATGAGGGGGTTTAAGATTTTAG
AGGGGGGGTCAAGTAAAAATAGGGGGGATAACAACTTTTGGTCAAAATAT
CTATCATATTTATATTGATTTAGTTATTTGGTATGGGACAACTAAAAAAC
AAGTGTAGATAGCTAAATCTTTGCCTGCGGCACCATGTTAAACTCTTTTT
TTTCATATAATTTTTTATACAAATTTCAATGTTTTCGGTTTTGAATGACT
GGTGGACTGCTGCTGTCAATAGCACGGGCTCGAATTTTTTTTTTAATAGG
GGGATACACATATAGGGGGATGAAATAAAAATAGGGGGTTTAGATTACTC
TGCACACTATGTTTTTCTCCGTTCAAGCTCTACTTTATAAAACAAGTAGC
CAATATTTGGAAGTTTTGTCAAGACTACATGTCACTGAACCACCTCATTA
TTCTTCCAGGGTTTAGACAGGTCCATGACCTCGGCAAAACACAGGGTTTT
TTTAAAGAACCAATTTTTAAAATGTCTCTTGCATTATAGCTTGTATTCTA
GTGTCTGGATATACATGATTTTTAAATATTTCTCCTTTGGGGCCAACTTT
GGTTTTTTCAGGAACAGGGCTCCCTAAGCTAAAATTTGCCTTATGTACAT
TTTTCTGATTCTTACTTATATTGTTCCTACATTTCAATCAGTTATTGGAC
CTACCTTATTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTTCGTTCG
TCTGTCCGTCCGTCTGTTACCAGCTTTTCTCAGAATTGGCTCATTAGTTT
TTTCTGACTTTTTGCACAATGATGCAAAATGGCAATGCCCAGAACGTGAC
GGAGCCCGATTTTTGAGAACAAATTTATTTGGGCAAATTTGGGCCAAAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGGGTTTTTTAGACTTTGT
GCAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTACAAAGATGGAGGG
CAAGATTCTCTAAAGAATGGCTGAGGTGATTTTTCCTGGAAAATTCTTAT
TCGCCTTAAAAAACGGATTTTTGTATTTTGGGGAAATTCCCTATAACCAA
ATAAGAAAATATACCTTTTCTCAACGTTGACTCGTTATTTTTTTCTGATT
TTTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGTGTCAGAGCCCG
ATTTTCGAAAAAAAAATATATTTGGGCAAATTTGGGCCAAAAACTGCCTA
AAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTATTTTCT
GATTTTTTGTACAAAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAG
TGGTTTTTCCTGGAAAATTCTTATTCGCCTTAAAAAACGGATTTTCGTAT
TTTGGGGAAATTCCTTTTAACCAAATAAGAAAATATAGCTTTTCTCAAAG
TTGACTCATTATTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAA
TGCCCAAAATGTGACGGAGCCAGATTTTTACGGAAAATTATTTTGAGCAA
ATTTGGGCCAAAAACAGCTTAAAAGGTTTTTTGGGCCTGAATGGTTTAAA
TGATTTTCGTATTTGGGGAAATTCCTTTTTACCATTTTACATTATTCAAC
ACACAAGCTTTATTTTTCCATTCTGAATTTTTGTACAATTATTGTCACTT
TTTTCTTATTTTCATCTGATGTTAATCATTAGGTACAGGTCCATTCAGCA
TGTTGCTTGTTTTCTATTTAGTTTTCCACCCTTGAAAAGAGACTTTTTTT
GCATCTTGAAAATCAGAAACTTTTCCTATTGTCCAACCATGGTGGGCTAC
ATTTTGAATTGCAGCCTTTGATTGATTAATAAATTCCAAGTGAAATGATT
TCTACTTATGTTTGTGTTATTTATTAGATTATATATCGATTTCTCATCAT
GTCTACATCAATGGTTTTAGGTACGGGAAACACGGGGACTTCGTTGATTA
ATAACTCTACTTTTTAGCATGTTTTTCATGTTTTCCATTTAAAATTAGCA
TTATTTAGCATTTTTTTCTGCTCTTTTTGGCATTTTTTTATGCATGTTTT
TTCAAAAATGCCAGTGGGATCTCTGGACCTGTTGTATATTTTTGAAAAGC
TCTCAAAAAATTAAGATTAGTGATATATTGCGAGTATAGGTGATTTCTTT
ACCTAACTCGAGATATTAATCCTTTAAAAACAGTACATTTTTCTGTGTTT
TTCAGCCAGAAACAGCTGTTTTGTCCAGTTTTTGCGCTTTCGGAAGCTCA
ATATCTCGAGTTAGGTACTGAAATCGCCTATACTCGCAATATATCATTAA
TCTTGATTTTTTGAGAGCTTTCCAAAAATATACAACAGGTCTCCGTTTTC
TCAAGCTAAAATTTTCATTAATTTTTCACCCTATGATTTTTGCCTGAGAC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNACCAAAGTGTCCGAAAAAAAATTGGCACCCAAGTTATT
TTGATTCCCCTACCCCTTAGCTTTCCAAAAATGTATAACAAGTGCTTTGA
CTAAGAAATTCGAGCGATTTTACAAATTTTACCCTACTACTTCCACTTTC
TTTCATTGAATATTTCGATTTTGGAGGGGTTCGTTGGTTTCTAGGCTATA
TTGCAAGCCTTATTGGAGCAAATTTTAGGTTTAAAATCCTGACAGATCCT
GAGATCTTAATGGCCTAAGTCTTTAAGTCTCATGTTAAAACTCAGAGTTA
AAACTCTATTTTCCAACTGTAGTTTTAACGCGCTTAAAATCATTTGTAGT
GTTTAAAATTTCGCAGGGAAATCCCCTTTGGTTCAAATATCTTGTCCATG
ATTGTAACACGAACAAATAATACAACACTAAAAAATATTTGTCCTCATGG
AACCAAAATGTTTTGTTGCCTTGCATTTACTGAACGAATGATGAAAGTAT
ATGTTTTTTTTTCTCTCAGGAAATGACAGAAAATCGCATACCAGTTGTGA
CTCATGAAGTGGGTAAGTCCCGGGGGGGAGGGGGCACTCGATTTTGAAAA
CGACCGTACGTTCGGCAAAAATCAGGTCTCCAAAATCGGACCCTTACAGT
GCAGGAAAAATTTGGCTGAAAATCGACCCTTACAGTGCAATTTTTCAAAA
AAATTGGAAATTTCTCAAATTTTACCTCAAAATTTGGTATTTTCTCAAAT
TTTACATCCTTACAGTGCACTTTTTCCCACTTGCTCACAAATCAACCCTT
ACAGTGCACTTTCCAAAGTCCAAAAACCTACCCTTAAGGGCCGCAGGTCC
GGTAGATCACTTACCTGGAGTGCCCTCCCCCCCCCCTGGGGTAAGTTTGA
TCTTGAGGTTTAACTTTTTAATATGACAAAATTTCTAGTGCGGGGCTTTT
CAGATTTTAATAAAGAAAGTTCTTTGAGTCATATTTGAACAGACGTTCTT
AAAAATTGAGGGCGCCCGGGATCAAAGGGGAGAGTCTCCGTTAAAATGGA
TTAGAAACGAACGTAATTTTCCGTTTTAGTACCGGATGCATTGCGAACGA
AATACGAACCGGACGTCGAGAAAGTAGAGGAAGAACTCACTTTACAATCC
AACTCCATCTCTGTTGATATGGCTAGGGTAAGAATTCACAAACAACGTTT
ATGATGGATGGGAAAGTGCTATTTTCAATGTTTTGAAAAAAGTATTTTAA
TTGGATTAATTTTCGCGCGGACTTTTCTTTTGCAAATTGAGAATCTAAAA
ATTTCGCGCGGATTACGCGAATCAGCTTTTTTTTCACCTACTGTAATTAC
TTTCATTTTCCTAGGGTTTTTGGCTGAAATTCGGATTTTTAATTTTTAGT
GAGGACTAAATTTCGCGAAAAGGGCCCAAATTCGCGAAAATTGCGAAAAT
TAATCCACGTGAAATTTAATTATCACAAAAATAGCCTTTTTTTCCTCATT
TTTCACGCACCAGATTCAGGGTCGTGATCGTGATCGTTTTTGCAATTATT
TCAAAGGGATCAAGACAGGTCGTGACTGAATCTCGAAAATAAGTTTCTGA
TTTTTTTTTTTTTACCTTTTTATTTTCTTTATTTGCTAAATTCGTAGATT
TCTTTCTTTTCCTTACATAATAAGTTACTTATCTATACTCGTTTTCCCTT
ACCATTTCAGTCTCAAGTAGTAGCGTTGAACGATCTGATTGGCTCCATGT
TGGATTTGATACAAAACAGTCGCGATTGGGAAACGGAAAGTTCGGTGGAG
CAAGCAGACTTAGCGCCGTCAGCAAACGATACCAACATCCTCTTGGCTGC
CATCACGCAAGGCTCTGGTAAGTTCTACACCTATCATCCAAAGAAGTATA
AGCCCGAAGGGCTAGAATCGAATCTTTAAAATTTCTCAGGCAAGAAAAAT
TGAAGCCTTAAAATATGCGCCGTGTTTTTGACGACGGATTGAATCTAGCG
ATTCCTTTGCTTTAGAGTCATATCTTTTTCGAAATTTAGATCTAAATTTT
AGTTTTAGTCTGTCATTTGTGTAAAAACTCAGCGGACCGCGCTAGGCCGC
GCAACTTTGGTAGGATTTGGCAGGCTTCAAATCCTACCAAGGAGATTCGA
TTCTAGCCCTTTGGACTTATACTTCATATTGCTGTCTTCTCTTACAGCTC
GTATTCTTTGTTGAAAATAGGGTTTTTTCATCACCAGCTTCTTTCAAAGT
TCTTAGAATTAGAGTAATAGTACTGAGAAAGTGTAAAATTTGAATACTGT
AGATTAATGAATAAATTTTCTTATCTTTTTAGGATTACGAAAGTCGTCGA
GTAAGTTTTATCCATTTTCACTCATTAATTTGATGCAAAAGTTAATTTCT
TTAAATTTCTTGACAAGGCAATTAGCGGAGTTCTCTCAAAAAACTCTTTA
ACGAAGGTTAATTTTCGCAAAGATTACAATTTCCTCAAGTTAGCGAGAGT
AAAGGTTGTATTTTTCGCGATTTTTCGACCTCGTGAAAATTTCTGCTCAC
AAAAGTTTGTCTAAATTATATTCCGGTACTTTTAAAAAACCGATGCATCA
TACTGTCCCTTTATAATATTCGACAAGTAAAAGTAGAGCATTTTATATTC
ATAACATTCTGACTGATATAGAAATGACGAAATTTTTCAGCATGTTTTAC
CTACACACGACCAGATCCTGCAAACCGCTCCCTTTGAAGTTAAGCCGAAG
ACATCCTTGTGTTGTTTTGTTGTTTTTTCGAATTGTACATACTTGTGTTA
TTTATTGCGTGAAAATCCAGACATATTTTATATTACGTTTCAAAGTGCGA
GTCTATTCCCTTTTTTTTGACTTCTTAGTAATTACTCTTGTCTCCCGAAT
AGACGGGGGGAGGGGGTAGGAAAATTTTTTAAAGCAGGGGGGGGGTAGAA
TAAGAGAGGGTTAATTTGAAGACAGAATTTTTTTAACTGGTATCAATTTC
AACAGCAAAAAAGAAACTTTAACAAATGAACACGTAAAATAAGAACCAAT
ACTAACAAAAAGGAAAATTTTAGCCTGTGTAAGGTCTATCTACACTGTAA
TGAAATATTGAATTAATCGAATTTAATTAGCGGGGGTGGATGTTATTTCT
CTTATAACATTTAGTGGGGGGCGTTTATTCGGGAGATAAGAGCATGCACT
TCCTGAAAATTAAATACCCTAGTAAATTTTGAGTTGATCAAGTTGAATGA
ATTTGGTGAAAGAGAGGCTGATTCGCAAAGTCTTGTCCTTAGATTTTAAA
TTCAAACTTACTTCAAGCATAAGTACGTGGTCGAAAAATCGAGACATTAA
TGATATATCTATTGCCTTTCGCGACACTGTAACTTTATTGGCTAAATTGC
TTGCATTCTTTCTTCCTGTAACCTTAAGTTTTATAGGTTTTCTACATTCG
AAAGCATAAAATTTTTTCGAAAAGGCCAAAAGATTGAACGAACAAAAATT
GGTTCTCGAACTCTCATGCAAGGATACTGATAGTATTTGCGATGAAAACA
ATTTAGCAAGCGGGAAGATTTCTTTTAATNAAACTCTCATACAAGGATAC
TGATAGTATTTGCGATGAAAACAATTTAGCAAGCGGGAAGATTTCTTTTA
ATAGGTCAGGTGGCTTGTAGAGCGCATATCTTTAATCATAGAAATTTTAG
CGAGACTAATTTTAGCGAGTTTTCCCTATCTTCGCTAAAATAAATCTCGC
TAAAACACGCCGAATCGCCAGATCGCTAAAATTTATCCGCGCGAAATTTC
TGGTTGTATTGCCTTGATACATTTTTATCAATAGAAAGGGTTTCAGTGCA
AAGAAATGCTAGAAAACGAATTCAATCAATAATGTGATACGAGTGTTCGC
TAAAATTAATAAATAAATCCAAAAAAATCAAGATTTTCCTGACTCGCTAA
TATACGCTAAAATTAGTCTCGCTAAAATTTCTACGATTATAGTATCTTAT
GAAATATTTTTTGGGTCGGTTATTTCCAGGTTCACGAAGTTCCTCACAGC
GAAGTTCATCGCAACAGCGAAGCAGTTCGCACCACCATTAGAATTTTAAT
GTAAAATAGCTTTTTCATTTTTATTGTAGTATAATATTTTTTAAATTGTC
AATATATACAAAATTTAACGAATAAAATCAAATTGTAAAATTTATTTCAT
CTGAATTATCAGCCTTTCCAAGAAACCGAAAACTTTTCGGGTTGATGGAG
AAAAACTTGTTAGGGTCGTAAAATGATTCTTCGTACGTGTTTAGCTTCCA
TGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010554XLOC_010554Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018853-exon-sc0000309-1575043694:222327..223265TCONS_00018853-exon-sc0000309-1575043694:222327..223265Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1575043694:221887..222002TCONS_00018853-exon-sc0000309-1575043694:221887..222002Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1575043694:221721..221755TCONS_00018853-exon-sc0000309-1575043694:221721..221755Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1575043694:220240..220349TCONS_00018853-exon-sc0000309-1575043694:220240..220349Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1575043694:216604..216646TCONS_00018853-exon-sc0000309-1575043694:216604..216646Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1575043694:215989..216086TCONS_00018853-exon-sc0000309-1575043694:215989..216086Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1575043694:215299..215455TCONS_00018853-exon-sc0000309-1575043694:215299..215455Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1575043694:214816..214833TCONS_00018853-exon-sc0000309-1575043694:214816..214833Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1575043694:212863..213136TCONS_00018853-exon-sc0000309-1575043694:212863..213136Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1510915933:222327..223265TCONS_00018853-exon-sc0000309-1510915933:222327..223265Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1510915933:221887..222002TCONS_00018853-exon-sc0000309-1510915933:221887..222002Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1510915933:221721..221755TCONS_00018853-exon-sc0000309-1510915933:221721..221755Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1510915933:220240..220349TCONS_00018853-exon-sc0000309-1510915933:220240..220349Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1510915933:216604..216646TCONS_00018853-exon-sc0000309-1510915933:216604..216646Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1510915933:215989..216086TCONS_00018853-exon-sc0000309-1510915933:215989..216086Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1510915933:215299..215455TCONS_00018853-exon-sc0000309-1510915933:215299..215455Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1510915933:214816..214833TCONS_00018853-exon-sc0000309-1510915933:214816..214833Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1510915933:212863..213136TCONS_00018853-exon-sc0000309-1510915933:212863..213136Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1491911889:222327..223265TCONS_00018853-exon-sc0000309-1491911889:222327..223265Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1491911889:221887..222002TCONS_00018853-exon-sc0000309-1491911889:221887..222002Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1491911889:221721..221755TCONS_00018853-exon-sc0000309-1491911889:221721..221755Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1491911889:220240..220349TCONS_00018853-exon-sc0000309-1491911889:220240..220349Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1491911889:216604..216646TCONS_00018853-exon-sc0000309-1491911889:216604..216646Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1491911889:215989..216086TCONS_00018853-exon-sc0000309-1491911889:215989..216086Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1491911889:215299..215455TCONS_00018853-exon-sc0000309-1491911889:215299..215455Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1491911889:214816..214833TCONS_00018853-exon-sc0000309-1491911889:214816..214833Clytia hemisphaericaexon
TCONS_00018853-exon-sc0000309-1491911889:212863..213136TCONS_00018853-exon-sc0000309-1491911889:212863..213136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:212863..223265 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.213598	0.976741	8.83859e-05	1.76551	3.02747	3.26387	3.53336	2.75641	2.68435	2.06463	1.3871	1.91899	1.24772	1.13754	0.500114	1.4514	1.64244	1.13799	1.13525	0.972763	0.662958	0.722831	0.277447	0.916957	1.50739	0.815189	0.608685	0	1.00328	0
Blast
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BLAST of TCONS_00018853 vs. Swiss-Prot (Human)
Match: MED8 (Mediator of RNA polymerase II transcription subunit 8 OS=Homo sapiens GN=MED8 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 3.512e-43
Identity = 83/195 (42.56%), Postives = 129/195 (66.15%), Query Frame = 1 
Query:  940 EKEENVIATSLQNLIGRVSDIKMSIQNFMFKLEHET--LSWPQMLDNFALLSGQISTLNKLLKNDRMPVLRNLCILPLMVSQERDTEMEEMTENRIPVVTHEVVPDALRTKYEPDVEKVEEELTLQSNSISVDMARSQVVALNDLIGSMLDLIQNSRDWETESSVEQADLAP-----SANDTNILLAAITQGSGL 1503
            ++EE  +  SL  L+ +V+D+K S+ +F+ KLE+E   L+WP +LD+FALLSGQ++TLNK+LK+++ P+ RN  I+PL++S +RD ++   TE R+PV +HEVVPD LRTK +P+VE+ E++LT  +  I  D A+ Q+ +LN +  ++L+ I      + E   E   L P     +  DTN L+AA+  G GL
Sbjct:    2 QREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKIS-----KEERESESGGLRPNKQTFNPTDTNALVAAVAFGKGL 191
The following BLAST results are available for this feature:
BLAST of TCONS_00018853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED83.512e-4342.56Mediator of RNA polymerase II transcription subuni... [more]
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