TCONS_00018849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018849
Unique NameTCONS_00018849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4064

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018849 ID=TCONS_00018849|Name=TCONS_00018849|organism=Clytia hemisphaerica|type=transcript|length=4064bp
ttttgaatgaaaaaaacaaccaattatatggaaaaagtccaatgaaaatc
cagaaaaacggcgatttccggcatattttcggcattttcgaccggaaaaa
attgtttctcaagaatcggactaggccatgttttggtcattgttaatacg
catctttgagcaaaaaatcagaaaaaactgatgatgaaatctcgagaaaa
tgccgaaaaaccagtttttccggcatatttccgccattttcggccggaaa
aaattttttttcgaaaagcgggctccgtcacattttggccattgccattt
tgattaatgtgcaaaaaatcagaaaaaactgatgatgaaatctcgagaaa
atgccgaaaaaccagtttttccggcatatttccgccattttcggccggaa
aaaattttttttcgaaaagcgggctccgtcacattttgggcattgccatt
ttgcatcattgtgcaaaacattagaaaaaactaatgagccaatctcgaga
aaagctggtaactaacggacggacggacagacggacggacagacggacaa
aggttaatttataggacctccaccccaccggggtaggtccaaaaataata
ataatgaacAAACCTTCAAGCGTCAATTCCAGTGCTTCAATTTTGATTCG
AAGGTTTTCCTCTCGCTCCTTGTGTTCTTGCTTCAAGGATTTGAGATCTT
GCGCCAAACTTTTTGCCTTTCCTGAAATCTGACCATGAACACTTTTCAAA
AGTCTTAATTCCTCACTCAAACGCGTACGTTCAGATTCGAGGTGTTCAAT
GTCTTGTCGTTGTAGGTCGTTTTCTTCAAGAAGTTGAGTTCTTTCGTTTT
CCGAAGTTAATATCGACTCGTTGTNTTCTTCAAGAAGTTGAGTTCTTTCG
TTTTCCAAAGTTAATATCGACTCGTTGTGAATTTTACATTGATTATTTTC
AAGAAGCAAACTTTCGTAAGCCTCATTACAACCTTCAATCCTCTTTGATT
GATCTTCTAACTGTCTCTCGAGCGATTCTTTCTCTCTTTGTAATTTCTGA
ATCTCAAGGTCGTTTTCCTGCTTACTCATCTCTAAGCGTTCAATATTTGA
CAACAAGGTTTCAATTTCCCCATTCTGTTGTTCTAAGCTTTGCTTCATAG
AGGTGTTTTGCGTTTCCAAATCTCCGTGTTCATTCTGAAGAGTTTCTAAA
CGTGATTTAATTTCAGCGTAGACTTTAAGTAAAACCAAGAAAGCATTAGA
AAGATCCTCAAAACTACCAATGTCAGTTAAAGCTGGCTCCTCGTTAATAG
TTGTTGTTGCAGACTGTAAGTTTTCTATTGTCCTTGAAACTTGTTGCTTC
TCCTGAGCGATTCGCTGAGCTATTTGTACACATTGTTGTATTGTTGGAAG
CTGTGACGAGTCTCCGTCACACAAGCATTGCTTTATCGTCCGTAAATCAT
TGCATAACTTGCAAAGGTTCTTTTTGAATTGGTTAGTTATTTCATCAAAG
CTCGCATCATCTCCACCGGAGGCATATATTCCAAACGTGGTTTGATCTTC
TACCTCTTGCAAGTCCTTATGGCAGTCTTTTATCACATTTTCCAGAGAAA
TTAATTGTTCATTTTTTCCAGTCAGGGTTTGGTGCATGCGTACATGTTCT
TCTGCAAGACGATCAAAATTTTCGAGTGTACTTTTAGAAGTATCGACGAT
AGCTGATGAAGCCTCCATTCTCTGTTCTATTTTGTGTAGAATTGATGCCT
CCTCGCACAATTTTTGGTATCGTTTAGAAAAAGATCGGAGTCTCTGATGA
GTATCAATGTTGTTGTTAATGTCATCAATATTGTCATTCCCATCACCAAT
CAAATTGAAAGACAAACTTTCGATCTCCTTCACAAATGACTGATGATCAT
CCACAGCCGATTCTAAATTCACCACGTGCTCCTGAACGTGTTCGATTTTG
GACAAAATGTCTTCATTTAGGGATGGACCAGGGAGTTTTATAGCATCAAT
TTTGGCTTTTAATAGAGTTTCTGTTTCttcgaatttcaatttttcagatt
cTGCTTTGCTCAAATCACTTTTCATTTCTCTTACTTTATCtgagaaaaat
gtaatttttcgtTCGAAGGGAAGTATTTGACTTTCGTTTTCGAATCCGTT
TTCTCTTAAAAAGTCATCAATCACAGTTTGAGCCTGATTCTTACCATCGA
TCAAAACTCGTATCGAATCTTCCAGTTTCTCATCTTTTAGAAGTTCACTG
TATTGCAAGTTATTGCACAATAGTTGTTTTGCACTTGAGATTTCTTCATT
CTTGTTAGAAATTGAATCTTTGCAACACTGTATGAGCAATGTCAGGTTTT
CTTTGATGTCTTCATAATTTGTTTCAATGTCCACCAACCCCGAATCGTGT
ATCAAATTCACCAATTCCAACATTTCACTTTTCTTATTTTCctcatattt
ttgcaaaatgcGACAAATATCGTGGTCTTCTGTAGCTTGCTCACGTCCAA
CAAGTCCGACGCAAAATTCTTTTATCCGTTCTTCCAGCGATATGTATTCC
CTCTTCAACAATTCTTCAGATTTCTTTAACTTGGTAAACTCGTCAAATAA
AACACGCAAAGACATTTCATCATCTGTAGCTTTCTCACAGTTTGCATGAA
CAAATTCTCTTATTTCTTCCTCCTCTGACATATAATATTTCAATCTGGTC
TTGATATCATTCAAAGAATCTAAAACAATTTCGGTTCTCTCTTCACCCTG
CAAATATTTGGTGTCAGTTAGCTCCGCAAAGTCCTCTACCAATTGCTTCA
GATTCGTTCTTCCATCTATCAACAATTTTAGAGATTTAATAACATTCACA
TTTGATGAACAACCAACCATCTCTTTAACAGCGTTCAGGTCTCTTTCCAA
GGATTCAATTTTCTCTGTCATTACCTCAACACAACTTACCACAGCCGATA
CTAGATCATCATCTATGTTTTTGATGTCAAATATTAGTTTGATGTTATTT
ATTTCTATCTCTTGTAATTCgaaagtgtttttcattttggaaATTGAAGT
AACCAGCACTTCTTCAGAGGGCTTGCAGTTTAGAATAACAGCAAGTTTAG
ACATGGATTCATCTTTTTCCTGAATCACATCTGATTGCTCGCCCAACGAT
TTTTTCACTAACAAAATCTTTTCTTCGATAGTGGCACCTTGGTGAAAATC
AAGATCATCAGAATCTATTACAGAATTGATGGAAGTGACTTGCTGGTTCA
GGTCGTTGATTTCTTGTTTCATAATTTGAAAACGttgagtgatttcaatg
aaatgTTGAGTGCTGAATTCTTCCTCGATTTCAGAATCTTCTACATCACC
GTCATCATCATCAGAATCAACATGGAGGGAAAAGTTCAAAGACTTGTGGT
GGGGATcgattaaagtttttttcaaagcGAACAGATCATCCTGTAGAGAT
TGATGTTTTTCATCTTTCGCTTTGAGATTTTCGATAATTTGCTCCATATA
AAAATGTTCATCATGTAACAACAAATACTCTTGAAGCTTCCTCCGATCGT
GGTTCATGCTTTTTaaatcttgattttgtttttgtgcaATGTTcatcagg
attttcattttttcgaggGGTTCAGTAGTTTTCAACATGTCACTCAAATC
ATCAAAACTTCCTGTATCTTTATTAAGATAATCAACTAacttgatttctt
ctttgaaagAAGAAGAATGTTCAGAAAGTGTCTCTGATAGAATTTCTTTC
TCGATTCGTAACTGGTCGAAGCTCTCATTCAGAACTTTGTGTTTATTGAC
AAGGTTTTCAATTTTCTCCAATGTTGAATTTTCACGATTCTCCTCATCAA
AGAGATCAAGAGATTCTTCAAGGACCTTTTTGATAGATTCTGCTTCATGT
TTTAGGTGGTCATTCTCTTTCTCATAATCCGTcagaaatttcttttgttc
GTCAGATAATTGCTGGATGTGGGAAATATNGGTCATTCTCTTTCTCATAA
TCCGCcagaaatttcttttgttcGTCAGATAATTGCTGGATGTGGGAAAT
ATATTCTTCAACCT
Run BLAST on NCBI

transcript from alignment at sc0000309:190883..195004-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018849 ID=TCONS_00018849|Name=TCONS_00018849|organism=Clytia hemisphaerica|type=transcript|length=4122bp|location=Sequence derived from alignment at sc0000309:190883..195004- (Clytia hemisphaerica)
TTTTGAATGAAAAAAACAACCAATTATATGGAAAAAGTCCAATGAAAATC
CAGAAAAACGGCGATTTCCGGCATATTTTCGGCATTTTCGACCGGAAAAA
ATTGTTTCTCAAGAATCGGACTAGGCCATGTTTTGGTCATTGTTAATACG
CATCTTTGAGCAAAAAATCAGAAAAAACTGATGATGAAATCTCGAGAAAA
TGCCGAAAAACCAGTTTTTCCGGCATATTTCCGCCATTTTCGGCCGGAAA
AAATTTTTTTTCGAAAAGCGGGCTCCGTCACATTTTGGCCATTGCCATTT
TGATTAATGTGCAAAAAATCAGAAAAAACTGATGATGAAATCTCGAGAAA
ATGCCGAAAAACCAGTTTTTCCGGCATATTTCCGCCATTTTCGGCCGGAA
AAAATTTTTTTTCGAAAAGCGGGCTCCGTCACATTTTGGGCATTGCCATT
TTGCATCATTGTGCAAAACATTAGAAAAAACTAATGAGCCAATCTCGAGA
AAAGCTGGTAACTAACGGACGGACGGACAGACGGACGGACAGACGGACAA
AGGTTAATTTATAGGACCTCCACCCCACCGGGGTAGGTCCAAAAATAATA
ATAATGAACAAACCTTCAAGCGTCAATTCCAGTGCTTCAATTTTGATTCG
AAGGTTTTCCTCTCGCTCCTTGTGTTCTTGCTTCAAGGATTTGAGATCTT
GCGCCAAACTTTTTGCCTTTCCTGAAATCTGACCATGAACACTTTTCAAA
AGTCTTAATTCCTCACTCAAACGCGTACGTTCAGATTCGAGGTGTTCAAT
GTCTTGTCGTTGTAGGTCGTTTTCTTCAAGAAGTTGAGTTCTTTCGTTTT
CCGAAGTTAATATCGACTCGTTGTNTTCTTCAAGAAGTTGAGTTCTTTCG
TTTTCCAAAGTTAATATCGACTCGTTGTGAATTTTACATTGATTATTTTC
AAGAAGCAAACTTTCGTAAGCCTCATTACAACCTTCAATCCTCTTTGATT
GATCTTCTAACTGTCTCTCGAGCGATTCTTTCTCTCTTTGTAATTTCTGA
ATCTCAAGGTCGTTTTCCTGCTTACTCATCTCTAAGCGTTCAATATTTGA
CAACAAGGTTTCAATTTCCCCATTCTGTTGTTCTAAGCTTTGCTTCATAG
AGGTGTTTTGCGTTTCCAAATCTCCGTGTTCATTCTGAAGAGTTTCTAAA
CGTGATTTAATTTCAGCGTAGACTTTAAGTAAAACCAAGAAAGCATTAGA
AAGATCCTCAAAACTACCAATGTCAGTTAAAGCTGGCTCCTCGTTAATAG
TTGTTGTTGCAGACTGTAAGTTTTCTATTGTCCTTGAAACTTGTTGCTTC
TCCTGAGCGATTCGCTGAGCTATTTGTACACATTGTTGTATTGTTGGAAG
CTGTGACGAGTCTCCGTCACACAAGCATTGCTTTATCGTCCGTAAATCAT
TGCATAACTTGCAAAGGTTCTTTTTGAATTGGTTAGTTATTTCATCAAAG
CTCGCATCATCTCCACCGGAGGCATATATTCCAAACGTGGTTTGATCTTC
TACCTCTTGCAAGTCCTTATGGCAGTCTTTTATCACATTTTCCAGAGAAA
TTAATTGTTCATTTTTTCCAGTCAGGGTTTGGTGCATGCGTACATGTTCT
TCTGCAAGACGATCAAAATTTTCGAGTGTACTTTTAGAAGTATCGACGAT
AGCTGATGAAGCCTCCATTCTCTGTTCTATTTTGTGTAGAATTGATGCCT
CCTCGCACAATTTTTGGTATCGTTTAGAAAAAGATCGGAGTCTCTGATGA
GTATCAATGTTGTTGTTAATGTCATCAATATTGTCATTCCCATCACCAAT
CAAATTGAAAGACAAACTTTCGATCTCCTTCACAAATGACTGATGATCAT
CCACAGCCGATTCTAAATTCACCACGTGCTCCTGAACGTGTTCGATTTTG
GACAAAATGTCTTCATTTAGGGATGGACCAGGGAGTTTTATAGCATCAAT
TTTGGCTTTTAATAGAGTTTCTGTTTCTTCGAATTTCAATTTTTCAGATT
CTGCTTTGCTCAAATCACTTTTCATTTCTCTTACTTTATCTGAGAAAAAT
GTAATTTTTCGTTCGAAGGGAAGTATTTGACTTTCGTTTTCGAATCCGTT
TTCTCTTAAAAAGTCATCAATCACAGTTTGAGCCTGATTCTTACCATCGA
TCAAAACTCGTATCGAATCTTCCAGTTTCTCATCTTTTAGAAGTTCACTG
TATTGCAAGTTATTGCACAATAGTTGTTTTGCACTTGAGATTTCTTCATT
CTTGTTAGAAATTGAATCTTTGCAACACTGTATGAGCAATGTCAGGTTTT
CTTTGATGTCTTCATAATTTGTTTCAATGTCCACCAACCCCGAATCGTGT
ATCAAATTCACCAATTCCAACATTTCACTTTTCTTATTTTCCTCATATTT
TTGCAAAATGCGACAAATATCGTGGTCTTCTGTAGCTTGCTCACGTCCAA
CAAGTCCGACGCAAAATTCTTTTATCCGTTCTTCCAGCGATATGTATTCC
CTCTTCAACAATTCTTCAGATTTCTTTAACTTGGTAAACTCGTCAAATAA
AACACGCAAAGACATTTCATCGTCTGNATTTCTTTAACTTGGTAAACTCG
TCAAATAAAACACGCAAAGACATTTCATCATCTGTAGCTTTCTCACAGTT
TGCATGAACAAATTCTCTTATTTCTTCCTCCTCTGACATATAATATTTCA
ATCTGGTCTTGATATCATTCAAAGAATCTAAAACAATTTCGGTTCTCTCT
TCACCCTGCAAATATTTGGTGTCAGTTAGCTCCGCAAAGTCCTCTACCAA
TTGCTTCAGATTCGTTCTTCCATCTATCAACAATTTTAGAGATTTAATAA
CATTCACATTTGATGAACAACCAACCATCTCTTTAACAGCGTTCAGGTCT
CTTTCCAAGGATTCAATTTTCTCTGTCATTACCTCAACACAACTTACCAC
AGCCGATACTAGATCATCATCTATGTTTTTGATGTCAAATATTAGTTTGA
TGTTATTTATTTCTATCTCTTGTAATTCGAAAGTGTTTTTCATTTTGGAA
ATTGAAGTAACCAGCACTTCTTCAGAGGGCTTGCAGTTTAGAATAACAGC
AAGTTTAGACATGGATTCATCTTTTTCCTGAATCACATCTGATTGCTCGC
CCAACGATTTTTTCACTAACAAAATCTTTTCTTCGATAGTGGCACCTTGG
TGAAAATCAAGATCATCAGAATCTATTACAGAATTGATGGAAGTGACTTG
CTGGTTCAGGTCGTTGATTTCTTGTTTCATAATTTGAAAACGTTGAGTGA
TTTCAATGAAATGTTGAGTGCTGAATTCTTCCTCGATTTCAGAATCTTCT
ACATCACCGTCATCATCATCAGAATCAACATGGAGGGAAAAGTTCAAAGA
CTTGTGGTGGGGATCGATTAAAGTTTTTTTCAAAGCGAACAGATCATCCT
GTAGAGATTGATGTTTTTCATCTTTCGCTTTGAGATTTTCGATAATTTGC
TCCATATAAAAATGTTCATCATGTAACAACAAATACTCTTGAAGCTTCCT
CCGATCGTGGTTCATGCTTTTTAAATCTTGATTTTGTTTTTGTGCAATGT
TCATCAGGATTTTCATTTTTTCGAGGGGTTCAGTAGTTTTCAACATGTCA
CTCAAATCATCAAAACTTCCTGTATCTTTATTAAGATAATCAACTAACTT
GATTTCTTCTTTGAAAGAAGAAGAATGTTCAGAAAGTGTCTCTGATAGAA
TTTCTTTCTCGATTCGTAACTGGTCGAAGCTCTCATTCAGAACTTTGTGT
TTATTGACAAGGTTTTCAATTTTCTCCAATGTTGAATTTTCACGATTCTC
CTCATCAAAGAGATCAAGAGATTCTTCAAGGACCTTTTTGATAGATTCTG
CTTCATGTTTTAGGTGGTCATTCTCTTTCTCATAATCCGTCAGAAATTTC
TTTTGTTCGTCAGATAATTGCTGGATGTGGGAAATATNGGTCATTCTCTT
TCTCATAATCCGCCAGAAATTTCTTTTGTTCGTCAGATAATTGCTGGATG
TGGGAAATATATTCTTCAACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010553XLOC_010553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018849-exon-sc0000309-1575043694:192392..195004TCONS_00018849-exon-sc0000309-1575043694:192392..195004Clytia hemisphaericaexon
TCONS_00018849-exon-sc0000309-1575043694:190883..192333TCONS_00018849-exon-sc0000309-1575043694:190883..192333Clytia hemisphaericaexon
TCONS_00018849-exon-sc0000309-1510915933:192392..195004TCONS_00018849-exon-sc0000309-1510915933:192392..195004Clytia hemisphaericaexon
TCONS_00018849-exon-sc0000309-1510915933:190883..192333TCONS_00018849-exon-sc0000309-1510915933:190883..192333Clytia hemisphaericaexon
TCONS_00018849-exon-sc0000309-1491911889:192392..195004TCONS_00018849-exon-sc0000309-1491911889:192392..195004Clytia hemisphaericaexon
TCONS_00018849-exon-sc0000309-1491911889:190883..192333TCONS_00018849-exon-sc0000309-1491911889:190883..192333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:190883..195004 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29182	0.859283	1.84103	1.98109	1.90618	1.882	1.86025	2.0094	0.972634	1.224	1.09424	1.01082	0.612073	0.848677	0.458172	0.554774	0.608268	0.692093	0.981068	0.697548	1.67897	1.87832	0.935971	1.21082	1.51133	1.6885	2.57547	2.14475	0.9788	0.980504
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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