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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018847 ID=TCONS_00018847|Name=TCONS_00018847|organism=Clytia hemisphaerica|type=transcript|length=3046bp
CTGATAATTTGTACTGTTCGTTTGAATTTTGAGTAATTCATCAAAGGCAG
CCCTTAATATAAAATAACGGACCATTTttactcgatggggattgatattc
ccatgtttcttattgctggggatttgaatttcattgtattcgagccagaa
aattcagtgggcaTGGAAAAATAGCGCATTTTTTTGCAGTGGGGATTgac
ttatctgattattttcagtggtaaaattttccactggggacgatatttag
gccaatttttccagCAGGAAAGGGTCCCAGtggttctgtgagaagggggt
gtatttagCACAGATATTATTTTAACAAGGATTGGTCCTGGTTTCTTCCA
TTAACATCCatgagaaagttttaaagacGGTCAAATCAAAATGACACACT
TTCCTTTCCCCTGTTCTATTTTAGTGTCAACATAAAGCGTCATGGGTAAC
GTGGGTTCAGGACCGCCCTCAGGAGTCGACCTGGTCACTGAAGCAAAAAA
ACACTACGANTCTATTTTAGTGTCAACATAAAGTGTCATGGGTAACGTGG
GTTCAGGACCGCCCTCAGGAGTCGACCTGGTCACTGAAGCAAAAAAACAC
TACGAGTTCATCCAACAGTTGAACTTCACACCAAGTATCTACCATCCGAA
CAACATTAAAAGATCTATCATCAGATATGAACAGTTCTGGCTCCCATTTG
CCAGAAGTTTCCAGAATGAGTTTCTGATAGCACCTCTGGATATTGAATTG
ATTTGGGTTGTTCACATGTTGAATCCAGTGGCTTATGAAAGAGATTGTTT
TGCAATTGCCAACCGGTTGATCAGACATGAGATTGTGACGAAAGAAGAAA
GAGACAGTGATGAACGAGCAGAACAACTCTGGAACAACATGTACCGGAAC
GGCGAACCCTTCTACGTTGATATCAATCGGATTCCAAGCGACACAAAACC
ATACCGATCAGAATTGAGCAGTCATTTAATCAACGCTGTCAAAGAATACC
GAGAGTTTTGCCGACAGGTGTCATTACCGCATTACAAAGATGATAAATTC
CTTGAATTAGCTCTTCAAACTTACATCGAAGGTGCATTATCGGGTGACCT
TCGTAAAACAGCATACCCGTATCACAATTCTTTTATGTGGAAGACACACC
AGTTATTTCCGTCTGACTATCGCAGAGATTCGAAGTTCTTGAAAGAGACG
CACAACATGAACACGTTGGCGATGAGAGGTTCTGTCAAATCAGTGAAGTC
TGTCAAAAGTATGCGATCAAAATCTTTGACCTTTCGACGAAAGAGGAGAG
GGAGTCTTCCTTTACCACCGATGTATTCGAATCAGAGTCAGATCGTTTAT
GGGGCCATGTATCGTGGTGAGCAAACAGACCTTCAAGCGCGAGTAGGTTT
CCAGAAGATGGTGGACAAGATGTCAATCTACTGAGCTTCGAAATCAAAAG
CAAAGGGAACATTTTATTAAAAACCTTCAACAATACGCAAGAGGATCAAG
ATTTTCGATTTcaatttgatgaagaaaaatACGGCATCCTGCAGATTGCG
TTGATCGAGAACGAAACAGACCGCTCAAGTGCTATCCATCCCAAAACAAG
GAATTGTTATTCTACACNAGAAAAATACGGCATCATGCAGATTGCGTTGA
TCGAGAACGAAACAGACCGCTCAAGTGCTATCCATCCCAAAACAAGGAAT
TGTTATTCTACACAGTTCAGTTTTCCGAATGGTCAAGCGTACAAAGAAGG
CGAGCAATTCAAAATCACTTTCAGGTTACCCATGGATAGTGAGACACACC
GTGCTTTGAAACCGGAGATCAACGGATGGATCAGTTTCGCAACTTTGAAA
CCAAGCCTCGGTATCATCAAATACACTTTCGGTAAAGATAAACACCATCT
TGCTTCCACTAATCActattgtgacgtcatcaaaaacccGTTAGTAATGG
TTCCCTACGCAACCAAAGTTCACGACTGCCCTGCCGATTATATGAATCTC
ATCATGAAGGACACGCATGGGAAACCGGCTTTCCGTTGCCGAATTCTACA
ATCGAGACACGGTGATTTCTCCTCCGTAGAGGTGATGGATTTCGAAGACC
GTATGGTAGCTTCGTCCTACACCGTTGGCAAAGAAACCCTCCCCACTGCC
GATCAAGTTGGGGCGCCAGAACATTGCTGTATCCTTCGAGATCTCAACGA
GATGGTGTTCGTTATACGTGGCACAAATTACGAATGGGGTTTACTTAAAG
TCTTTCAAGATATGAAATCACACGAAGTCACGCCAGCTGGTGTTTTGTTT
ATGAATATTTCGGATCGCAATCCAACTTGGCAGCGTTTGTACGACCACCA
CAATAAAGTTCACGTCCTGTATCACAAAGCACGTAAAGGAGGTCTTTTGG
TGAATCTTGAAAACTGTTCCATCACATTACCACCCCTGTATCATGAATTT
CCTGATCTACTTGCACTGGGAGTGACACTTTTAACTTTATTTTGCGTCAA
AGAATTTCAACGCCTCTAACTTTCATTATTTATTGTAGAATCGTGTTAAA
CAAAAATGACTAAAGTTTATAAGTCGAAAAAGTTTTCTTACATTCTAAAA
GAGTCTCTTGTTTCTACTCTTAGCTCTTCCCTTGAGCTTCAATCAACCAG
GAATCGTGCGGACTTTAGTATAAATATTTGAATCATAAATTTaatgtaaa
attttataaactttagaaatattttggaattaTTACAGTATCTTATTATT
TTATCTACCCAAATGATTGTTGTATCGTCTTAATATCTCTCACTAATTAT
TTTGTCCGGAAGAATTACATAATAAATTGAACGAGGTCAGACTGGTTTTA
TGTTTTAATCcattgaaagaatttttagtCGGTTCAAAAAATGATAAGAT
CTTACACGTTATTGCACAGGTCATTGCTAAACAATTTTTGTTCAGGTCAA
CGCACACAATTTTTCACTTTCACCACTGACTATTTCATTATCTCGGACAT
TTTTAGCCAATTGGGTTTGCCTTATTTTATTTAAGGAACATTTTCA Run BLAST on NCBI protein sequence of TCONS_00018847-protein >TCONS_00018847-protein ID=TCONS_00018847-protein|Name=TCONS_00018847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MGNVGSGPPSGVDLVTEAKKHYEFIQQLNFTPSIYHPNNIKRSIIRYEQF
WLPFARSFQNEFLIAPLDIELIWVVHMLNPVAYERDCFAIANRLIRHEIV
TKEERDSDERAEQLWNNMYRNGEPFYVDINRIPSDTKPYRSELSSHLINA
VKEYREFCRQVSLPHYKDDKFLELALQTYIEGALSGDLRKTAYPYHNSFM
WKTHQLFPSDYRRDSKFLKETHNMNTLAMRGSVKSVKSVKSMRSKSLTFR
RKRRGSLPLPPMYSNQSQIVYGAMYRGEQTDLQARVGFQKMVDKMSIY Run BLAST on NCBI transcript from alignment at sc0000309:164696..168345- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018847 ID=TCONS_00018847|Name=TCONS_00018847|organism=Clytia hemisphaerica|type=transcript|length=3650bp|location=Sequence derived from alignment at sc0000309:164696..168345- (Clytia hemisphaerica)
CTGATAATTTGTACTGTTCGTTTGAATTTTGAGTAATTCATCAAAGGCAG
CCCTTAATATAAAATAACGGACCATTTTTACTCGATGGGGATTGATATTC
CCATGTTTCTTATTGCTGGGGATTTGAATTTCATTGTATTCGAGCCAGAA
AATTCAGTGGGCATGGAAAAATAGCGCATTTTTTTGCAGTGGGGATTGAC
TTATCTGATTATTTTCAGTGGTAAAATTTTCCACTGGGGACGATATTTAG
GCCAATTTTTCCAGCAGGAAAGGGTCCCAGTGGTTCTGTGAGAAGGGGGT
GTATTTAGCACAGATATTATTTTAACAAGGATTGGTCCTGGTTTCTTCCA
TTAACATCCATGAGAAAGTTTTAAAGACGGTCAAATCAAAATGACACACT
TTCCTTTCCCCTGTTCTATTTTAGTGTCAACATAAAGCGTCATGGGTAAC
GTGGGTTCAGGACCGCCCTCAGGAGTCGACCTGGTCACTGAAGCAAAAAA
ACACTACGANTCTATTTTAGTGTCAACATAAAGTGTCATGGGTAACGTGG
GTTCAGGACCGCCCTCAGGAGTCGACCTGGTCACTGAAGCAAAAAAACAC
TACGAGTTCATCCAACAGTTGAACTTCACACCAAGTATCTACCATCCGAA
CAACATTAAAAGATCTATCATCAGATATGAACAGTTCTGGCTCCCATTTG
CCAGAAGTTTCCAGAATGAGTTTCTGATAGCACCTCTGGATATTGAATTG
ATTTGGGTTGTTCACATGTTGAATCCAGTGGCTTATGAAAGAGATTGTTT
TGCAATTGCCAGTAAGTATTATTTCTTCCGAGCTTTGGCTTTGAGTGATG
CATCTTCGCAGCCCTGTCTCAGGGGCCGTTTTTTCACACAGTTGAAAAAT
GAATAATTACCGTTACACAAATTTCAGAGTATTTTTTTTCGCCCAAAATA
ATACCCTGTAATATTGTTTGTAATTGTTGTAACTGTTAACTGACTCACAG
CCCCTGTGGAACTTTTTTCCTCACTGGGGATAAAAACTCCTATTGAAATA
CTAATGGGGATAAAATTCTATTGTTCCAAGGTTAAAAAGTCCAGTGGGGA
TGGGGTTTGAGTGCAATTTTTAAACATTGAATTTCGAATGGGGATGAATT
GAAAGTCAATTTGCTGGTGGGACTGAAACTTCAGGGTATTTTCCCACCGG
GGACGAAATTTTTGCCAAATTTTCCAGTGGGGCTGGGGTCCCAGTGGGTC
TGTGACACAGGGGTGTGTTACTTATATTAGCAAGGAATTACTTTCATTTT
TTACAGACCGGTTGATCAGACATGAGATTGTGACGAAAGAAGAAAGAGAC
AGTGATGAACGAGCAGAACAACTCTGGAACAACATGTACCGGAACGGCGA
ACCCTTCTACGTTGATATCAATCGGATTCCAAGCGACACAAAACCATACC
GATCAGAATTGAGCAGTCATTTAATCAACGCTGTCAAAGAATACCGAGAG
TTTTGCCGACAGGTGTCATTACCGCATTACAAAGATGATAAATTCCTTGA
ATTAGCTCTTCAAACTTACATCGAAGGTGCATTATCGGGTGACCTTCGTA
AAACAGCATACCCGTATCACAATTCTTTTATGTGGAAGACACACCAGTTA
TTTCCGTCTGACTATCGCAGAGATTCGAAGTTCTTGAAAGAGACGCACAA
CATGAACACGTTGGCGATGAGAGGTTCTGTCAAATCAGTGAAGTCTGTCA
AAAGTATGCGATCAAAATCTTTGACCTTTCGACGAAAGAGGAGAGGGAGT
CTTCCTTTACCACCGATGTATTCGAATCAGAGTCAGATCGTTTATGGGGC
CATGTATCGTGGTGAGCAAACAGACCTTCAAGCGCGAGTAGGTTTCCAGA
AGATGGTGGACATGGGAAGCAATGTATACAACATGTCGGTAATAGCTGTC
AAATTGCAAGAACTTGACCCCGATCGCCAATACAGATTGATCATCAATGG
AAAAACTCCAACGTCGCGACAAGATGTCAATCTACTGAGCTTCGAAATCA
AAAGCAAAGGGAACATTTTATTAAAAACCTTCAACAATACGCAAGAGGAT
CAAGATTTTCGATTTCAATTTGATGAAGAAAAATACGGCATCCTGCAGAT
TGCGTTGATCGAGAACGAAACAGACCGCTCAAGTGCTATCCATCCCAAAA
CAAGGAATTGTTATTCTACACNAGAAAAATACGGCATCATGCAGATTGCG
TTGATCGAGAACGAAACAGACCGCTCAAGTGCTATCCATCCCAAAACAAG
GAATTGTTATTCTACACAGTTCAGTTTTCCGAATGGTCAAGCGTACAAAG
AAGGCGAGCAATTCAAAATCACTTTCAGGTTACCCATGGATAGTGAGACA
CACCGTGCTTTGAAACCGGAGATCAACGGATGGATCAGTTTCGCAACTTT
GAAACCAAGCCTCGGTATCATCAAATACACTTTCGGTAAAGATAAACACC
ATCTTGCTTCCACTAATCACTATTGTGACGTCATCAAAAACCCGTTAGTA
ATGGTTCCCTACGCAACCAAAGTTCACGACTGCCCTGCCGATTATATGAA
TCTCATCATGAAGGACACGCATGGGAAACCGGCTTTCCGTTGCCGAATTC
TACAATCGAGACACGGTGATTTCTCCTCCGTAGAGGTGATGGATTTCGAA
GACCGTATGGTAGCTTCGTCCTACACCGTTGGCAAAGAAACCCTCCCCAC
TGCCGATCAAGTTGGGGCGCCAGAACATTGCTGTATCCTTCGAGATCTCA
ACGAGATGGTGTTCGTTATACGTGGCACAAATTACGAATGGGGTTTACTT
AAAGTCTTTCAAGATATGAAATCACACGAAGTCACGCCAGCTGGTGTTTT
GTTTATGAATATTTCGGATCGCAATCCAACTTGGCAGCGTTTGTACGACC
ACCACAATAAAGTTCACGTCCTGTATCACAAAGCACGTAAAGGAGGTCTT
TTGGTGAATCTTGAAAACTGTTCCATCACATTACCACCCCTGTATCATGA
ATTTCCTGATCTACTTGCACTGGGAGTGACACTTTTAACTTTATTTTGCG
TCAAAGAATTTCAACGCCTCTAACTTTCATTATTTATTGTAGAATCGTGT
TAAACAAAAATGACTAAAGTTTATAAGTCGAAAAAGTTTTCTTACATTCT
AAAAGAGTCTCTTGTTTCTACTCTTAGCTCTTCCCTTGAGCTTCAATCAA
CCAGGAATCGTGCGGACTTTAGTATAAATATTTGAATCATAAATTTAATG
TAAAATTTTATAAACTTTAGAAATATTTTGGAATTATTACAGTATCTTAT
TATTTTATCTACCCAAATGATTGTTGTATCGTCTTAATATCTCTCACTAA
TTATTTTGTCCGGAAGAATTACATAATAAATTGAACGAGGTCAGACTGGT
TTTATGTTTTAATCCATTGAAAGAATTTTTAGTCGGTTCAAAAAATGATA
AGATCTTACACGTTATTGCACAGGTCATTGCTAAACAATTTTTGTTCAGG
TCAACGCACACAATTTTTCACTTTCACCACTGACTATTTCATTATCTCGG
ACATTTTTAGCCAATTGGGTTTGCCTTATTTTATTTAAGGAACATTTTCA
Coding sequence (CDS) from alignment at sc0000309:164696..168345- >TCONS_00018847 ID=TCONS_00018847|Name=TCONS_00018847|organism=Clytia hemisphaerica|type=CDS|length=2691bp|location=Sequence derived from alignment at sc0000309:164696..168345- (Clytia hemisphaerica)
AAGATGTCAATCTACTGAACCGGTTGATCAGACATGAGATTGTGACGAAA
GAAGAAAGAGACAGTGATGAACGAGCAGAACAACTCTGGAACAACATGTA
CCGGAACGGCGAACCCTTCTACGTTGATATCAATCGGATTCCAAGCGACA
CAAAACCATACCGATCAGAATTGAGCAGTCATTTAATCAACGCTGTCAAA
GAATACCGAGAGTTTTGCCGACAGGTGTCATTACCGCATTACAAAGATGA
TAAATTCCTTGAATTAGCTCTTCAAACTTACATCGAAGGTGCATTATCGG
GTGACCTTCGTAAAACAGCATACCCGTATCACAATTCTTTTATGTGGAAG
ACACACCAGTTATTTCCGTCTGACTATCGCAGAGATTCGAAGTTCTTGAA
AGAGACGCACAACATGAACACGTTGGCGATGAGAGGTTCTGTCAAATCAG
TGAAGTCTGTCAAAAGTATGCGATCAAAATCTTTGACCTTTCGACGAAAG
AGGAGAGGGAGTCTTCCTTTACCACCGATGTATTCGAATCAGAGTCAGAT
CGTTTATGGGGCCATGTATCGTGGTGAGCAAACAGACCTTCAAGCGCGAG
TAGGTTTCCAGAAGATGGTGGACATGGGTAACGTGGGTTCAGGACCGCCC
TCAGGAGTCGACCTGGTCACTGAAGCAAAAAAACACTACGAGTTCATCCA
ACAGTTGAACTTCACACCAAGTATCTACCATCCGAACAACATTAAAAGAT
CTATCATCAGATATGAACAGTTCTGGCTCCCATTTGCCAGAAGTTTCCAG
AATGAGTTTCTGATAGCACCTCTGGATATTGAATTGATTTGGGTTGTTCA
CATGTTGAATCCAGTGGCTTATGAAAGAGATTGTTTTGCAATTGCCAAAG
ATGTCAATCTACTGAACCGGTTGATCAGACATGAGATTGTGACGAAAGAA
GAAAGAGACAGTGATGAACGAGCAGAACAACTCTGGAACAACATGTACCG
GAACGGCGAACCCTTCTACGTTGATATCAATCGGATTCCAAGCGACACAA
AACCATACCGATCAGAATTGAGCAGTCATTTAATCAACGCTGTCAAAGAA
TACCGAGAGTTTTGCCGACAGGTGTCATTACCGCATTACAAAGATGATAA
ATTCCTTGAATTAGCTCTTCAAACTTACATCGAAGGTGCATTATCGGGTG
ACCTTCGTAAAACAGCATACCCGTATCACAATTCTTTTATGTGGAAGACA
CACCAGTTATTTCCGTCTGACTATCGCAGAGATTCGAAGTTCTTGAAAGA
GACGCACAACATGAACACGTTGGCGATGAGAGGTTCTGTCAAATCAGTGA
AGTCTGTCAAAAGTATGCGATCAAAATCTTTGACCTTTCGACGAAAGAGG
AGAGGGAGTCTTCCTTTACCACCGATGTATTCGAATCAGAGTCAGATCGT
TTATGGGGCCATGTATCGTGGTGAGCAAACAGACCTTCAAGCGCGAGTAG
GTTTCCAGAAGATGGTGGACATGGGTAACGTGGGTTCAGGACCGCCCTCA
GGAGTCGACCTGGTCACTGAAGCAAAAAAACACTACGAGTTCATCCAACA
GTTGAACTTCACACCAAGTATCTACCATCCGAACAACATTAAAAGATCTA
TCATCAGATATGAACAGTTCTGGCTCCCATTTGCCAGAAGTTTCCAGAAT
GAGTTTCTGATAGCACCTCTGGATATTGAATTGATTTGGGTTGTTCACAT
GTTGAATCCAGTGGCTTATGAAAGAGATTGTTTTGCAATTGCCAAAGATG
TCAATCTACTGAACCGGTTGATCAGACATGAGATTGTGACGAAAGAAGAA
AGAGACAGTGATGAACGAGCAGAACAACTCTGGAACAACATGTACCGGAA
CGGCGAACCCTTCTACGTTGATATCAATCGGATTCCAAGCGACACAAAAC
CATACCGATCAGAATTGAGCAGTCATTTAATCAACGCTGTCAAAGAATAC
CGAGAGTTTTGCCGACAGGTGTCATTACCGCATTACAAAGATGATAAATT
CCTTGAATTAGCTCTTCAAACTTACATCGAAGGTGCATTATCGGGTGACC
TTCGTAAAACAGCATACCCGTATCACAATTCTTTTATGTGGAAGACACAC
CAGTTATTTCCGTCTGACTATCGCAGAGATTCGAAGTTCTTGAAAGAGAC
GCACAACATGAACACGTTGGCGATGAGAGGTTCTGTCAAATCAGTGAAGT
CTGTCAAAAGTATGCGATCAAAATCTTTGACCTTTCGACGAAAGAGGAGA
GGGAGTCTTCCTTTACCACCGATGTATTCGAATCAGAGTCAGATCGTTTA
TGGGGCCATGTATCGTGGTGAGCAAACAGACCTTCAAGCGCGAGTAGGTT
TCCAGAAGATGGTGGACATGGGTAACGTGGGTTCAGGACCGCCCTCAGGA
GTCGACCTGGTCACTGAAGCAAAAAAACACTACGAGTTCATCCAACAGTT
GAACTTCACACCAAGTATCTACCATCCGAACAACATTAAAAGATCTATCA
TCAGATATGAACAGTTCTGGCTCCCATTTGCCAGAAGTTTCCAGAATGAG
TTTCTGATAGCACCTCTGGATATTGAATTGATTTGGGTTGTTCACATGTT
GAATCCAGTGGCTTATGAAAGAGATTGTTTTGCAATTGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018847-exon-sc0000309-1575043694:167535..168345 | TCONS_00018847-exon-sc0000309-1575043694:167535..168345 | Clytia hemisphaerica | exon |
| TCONS_00018847-exon-sc0000309-1575043694:166435..167039 | TCONS_00018847-exon-sc0000309-1575043694:166435..167039 | Clytia hemisphaerica | exon |
| TCONS_00018847-exon-sc0000309-1575043694:164696..166325 | TCONS_00018847-exon-sc0000309-1575043694:164696..166325 | Clytia hemisphaerica | exon |
| TCONS_00018847-exon-sc0000309-1510915933:167535..168345 | TCONS_00018847-exon-sc0000309-1510915933:167535..168345 | Clytia hemisphaerica | exon |
| TCONS_00018847-exon-sc0000309-1510915933:166435..167039 | TCONS_00018847-exon-sc0000309-1510915933:166435..167039 | Clytia hemisphaerica | exon |
| TCONS_00018847-exon-sc0000309-1510915933:164696..166325 | TCONS_00018847-exon-sc0000309-1510915933:164696..166325 | Clytia hemisphaerica | exon |
| TCONS_00018847-exon-sc0000309-1491911889:167535..168345 | TCONS_00018847-exon-sc0000309-1491911889:167535..168345 | Clytia hemisphaerica | exon |
| TCONS_00018847-exon-sc0000309-1491911889:166435..167039 | TCONS_00018847-exon-sc0000309-1491911889:166435..167039 | Clytia hemisphaerica | exon |
| TCONS_00018847-exon-sc0000309-1491911889:164696..166325 | TCONS_00018847-exon-sc0000309-1491911889:164696..166325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:164696..168345 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR009836 | GRDP-like |
Blast
The following BLAST results are available for this feature:
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