TCONS_00018846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018846
Unique NameTCONS_00018846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018846 ID=TCONS_00018846|Name=TCONS_00018846|organism=Clytia hemisphaerica|type=transcript|length=569bp
CGCCGATGACAAGGAGATTATTGGTGATTCTGAAGCCGCCCGTGACAcgc
cttcacaaaaagtttgcGCAAAGAAAGCACAAGACGTTAAAAACGttctc
aagaaaaaagtttcgaAGGAAAAGAAGGATCGAAAATCCAAAATGaagaa
tggaaagaaacaaGCTCCCTTGAGcaCAAACGATGCACAACTCAAATGGA
AGGTTGATGCAACGGATGAGAGCACAGACAACAAGTGGTGGAATTTCTTC
TTCGTCCTCATCTCCATCATCCTCTTGGTGTCCTATTTCCACATCCAAGA
TGTCCAAAGCTACCTCAACATGTATGATGTCCAAGGATACCTCAACATGT
ATGATGTCCAAGGATATTTAGAATCAACAACCGCTGTTTGCCAACAAGCT
TTCACTGACCTCAAAGATGGAGTTTTCGGACTTTTCAACAATTAAATGTG
ACCCTCCGTCTTGGTGCTTGTAAGGAGAAGTGTTCGGTTGATCTGAACTT
GTTGTATACAGCATTCTTTTTTGAACTTATTCGAATCATATCTGAAGGAA
CGAAAAGTGTACCTCAGGC
Run BLAST on NCBI

protein sequence of TCONS_00018846-protein

>TCONS_00018846-protein ID=TCONS_00018846-protein|Name=TCONS_00018846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
ADDKEIIGDSEAARDTPSQKVCAKKAQDVKNVLKKKVSKEKKDRKSKMKN
GKKQAPLSTNDAQLKWKVDATDESTDNKWWNFFFVLISIILLVSYFHIQD
VQSYLNMYDVQGYLNMYDVQGYLESTTAVCQQAFTDLKDGVFGLFNN
Run BLAST on NCBI

transcript from alignment at sc0000309:125053..126024-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018846 ID=TCONS_00018846|Name=TCONS_00018846|organism=Clytia hemisphaerica|type=transcript|length=972bp|location=Sequence derived from alignment at sc0000309:125053..126024- (Clytia hemisphaerica)
CGCCGATGACAAGGAGATTATTGGTGATTCTGAAGCCGCCCGTGACACGC
CTTCACAAAAAGTTTGCGCAAAGAAAGCACAAGACGTTAAAAACGTTCTC
AAGAAAAAAGTTTCGAAGGAAAAGAAGGATCGAAAATCCAAAATGAAGAA
TGGAAAGAAACAAGCTCCCTTGAGGTATGTTGTTTTAATGTTTTTAAATC
AGTAGAATGATTTTTTTAGAAGGCTCGATGAAAATTGGGGAAGATTAAAA
TAGAGTGAGCAAAGAAGCGAAAAATTTTTCACGTATCAGTCCCTAAAGCC
ATCCGATGGTAAAATTTATATTAAAGGTTTTATTTTTACATAAACGTTCC
CGTTTTATATCAGACACATATCTCATATCAGAACGGTATTGTTATAAAGT
GCTGAATAAACAAAAAATTGGTTTTATTAGGTTTTTTATTTATCTTTCCG
ACCAATCTTGCTCCACATCCGTGTCAATTCAATGTCTAAAAGCTTGTAAA
TTAAAATTGATGAGTAAGCAAACGGTATCACTCTTATTTAAAAACAAAAC
CTTTATGTGTCTTTCTTTTTCTTTCAGCACAAACGATGCACAACTCAAAT
GGAAGGTTGATGCAACGGATGAGAGCACAGACAACAAGTGGTGGAATTTC
TTCTTCGTCCTCATCTCCATCATCCTCTTGGTGTCCTATTTCCACATCCA
AGATGTCCAAAGCTACCTCAACATGTATGATGTCCAAGGATACCTCAACA
TGTATGATGTCCAAGGATATTTAGAATCAACAACCGCTGTTTGCCAACAA
GCTTTCACTGACCTCAAAGATGGAGTTTTCGGACTTTTCAACAATTAAAT
GTGACCCTCCGTCTTGGTGCTTGTAAGGAGAAGTGTTCGGTTGATCTGAA
CTTGTTGTATACAGCATTCTTTTTTGAACTTATTCGAATCATATCTGAAG
GAACGAAAAGTGTACCTCAGGC

Coding sequence (CDS) from alignment at sc0000309:125053..126024-

>TCONS_00018846 ID=TCONS_00018846|Name=TCONS_00018846|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0000309:125053..126024- (Clytia hemisphaerica)
CACAAACGATGCACAACTCAAATGGAAGGTTGATGCAACGGATGAGAGCA
CAGACAACAAGTGGTGGAATTTCTTCTTCGTCCTCATCTCCATCATCCTC
TTGGTGTCCTATTTCCACATCCAAGATGTCCAAAGCTACCTCAACATGTA
TGATGTCCAAGGATACCTCAACATGTATGATGTCCAAGGATATTTAGAAT
CAACAACCGCTGTTTGCCAACAAGCTTTCACTGACCTCAAAGATGGAGTT
TTCGGACTTTTCAACAATTAAGCCGATGACAAGGAGATTATTGGTGATTC
TGAAGCCGCCCGTGACACGCCTTCACAAAAAGTTTGCGCAAAGAAAGCAC
AAGACGTTAAAAACGTTCTCAAGAAAAAAGTTTCGAAGGAAAAGAAGGAT
CGAAAATCCAAAATGAAGAATGGAAAGAAACAAGCTCCCTTGAGCACAAA
CGATGCACAACTCAAATGGAAGGTTGATGCAACGGATGAGAGCACAGACA
ACAAGTGGTGGAATTTCTTCTTCGTCCTCATCTCCATCATCCTCTTGGTG
TCCTATTTCCACATCCAAGATGTCCAAAGCTACCTCAACATGTATGATGT
CCAAGGATACCTCAACATGTATGATGTCCAAGGATATTTAGAATCAACAA
CCGCTGTTTGCCAACAAGCTTTCACTGACCTCAAAGATGGAGTTTTCGGA
CTTTTCAACAATTAAGCCGATGACAAGGAGATTATTGGTGATTCTGAAGC
CGCCCGTGACACGCCTTCACAAAAAGTTTGCGCAAAGAAAGCACAAGACG
TTAAAAACGTTCTCAAGAAAAAAGTTTCGAAGGAAAAGAAGGATCGAAAA
TCCAAAATGAAGAATGGAAAGAAACAAGCTCCCTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010550XLOC_010550Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018846-proteinTCONS_00018846-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018846-exon-sc0000309-1575043694:125851..126024TCONS_00018846-exon-sc0000309-1575043694:125851..126024Clytia hemisphaericaexon
TCONS_00018846-exon-sc0000309-1575043694:125053..125447TCONS_00018846-exon-sc0000309-1575043694:125053..125447Clytia hemisphaericaexon
TCONS_00018846-exon-sc0000309-1510915933:125851..126024TCONS_00018846-exon-sc0000309-1510915933:125851..126024Clytia hemisphaericaexon
TCONS_00018846-exon-sc0000309-1510915933:125053..125447TCONS_00018846-exon-sc0000309-1510915933:125053..125447Clytia hemisphaericaexon
TCONS_00018846-exon-sc0000309-1491911889:125851..126024TCONS_00018846-exon-sc0000309-1491911889:125851..126024Clytia hemisphaericaexon
TCONS_00018846-exon-sc0000309-1491911889:125053..125447TCONS_00018846-exon-sc0000309-1491911889:125053..125447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:125053..126024 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.394197	0.384404	0.557913	0.436664	4.38567	2.31041	2.78741	1.77923	2.49137	2.46877	2.09672	4.00363	1.50747	2.51844	0.839393	0.420372	2.36738	1.44073	6.18084	2.41173	2.76321	4.18282	0.903957	0.7191	2.96262	2.54964	1.62157	0.721075	0.54691	1.11443
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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