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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018840 ID=TCONS_00018840|Name=TCONS_00018840|organism=Clytia hemisphaerica|type=transcript|length=4956bpRun BLAST on NCBI transcript from alignment at sc0000309:114575..137575- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018840 ID=TCONS_00018840|Name=TCONS_00018840|organism=Clytia hemisphaerica|type=transcript|length=23001bp|location=Sequence derived from alignment at sc0000309:114575..137575- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018840 vs. Swiss-Prot (Human)
Match: ATP7B (Copper-transporting ATPase 2 OS=Homo sapiens GN=ATP7B PE=1 SV=4) HSP 1 Score: 1038.1 bits (2683), Expect = 0.000e+0 Identity = 556/1212 (45.87%), Postives = 772/1212 (63.70%), Query Frame = 1
Query: 67 ISIKGMTCQSCVQSISNALSEQPGIIEYEISLQNNNGKFKINPDVVTSENIIQCLEGCGFDALLVNDGA----------------------------------GENG--LTEVLVNVEGMTCQSCVTSIENLFMNYKGVSSVEVSLANHNALFVYDKSIANEKDIIRVIE---DAGFEVPM--------------TTVDMDTSNVTEDLGNCSVTHVYIESLETQKEAFYIKESLEKLDGVFSVRVHLTSKSGIIKHSLEETNVNDIIVFINDLGFQ-------CSLKAVDLRRSSHSVSSLT----------TPAIQSSPSRHEDE-----------ESVTKLIVSINGMTCASCVANIEKNLNKKEGVRSCVVALLAQKSEIRYERVLTDADSIVSTINQLGFEASIIEDGASSDVTLDLQIEGMTCASCVSSIESTLLKLPGMISASVALTTSSGKFTFNPDLLGTRDIVEKINNLGFNASISKYNDNKLEALSHAKTIQRWRGSFLVSLIFGVPVLCVVLTYSVIGEQTGFY-------ISPGLSLQNFLLFILCTPVQFFGGRYFYVMAYKSLKHGIANMDVLIVMATTVAYIYSFVVLLLAVIQQPQKSPMTFFETPPMLLVFISLGRWLENLAKSKTSEALSKLLQLQPADAILIKLNKNTGAV-ESQTPIDIDLVQRGDILQVVPGSKVPVDGRIVDGFSMADESLITGESMPVAKTVGDPVIGGSINQNGTLLMEATHVGSDTTLAQIIKMVEEAQTSKAPIQQLADRISGVFVPIVIAMSLMTLITWLIIGFVNFELITHNYNTVD--YSRIEITIQFAFRCAISVLCIACPCALGLATPTAVMVGTGVGAQNGILIKGGEPLEITHKVKTIIFDKTGTLTHGKPVVTKVHLYVKKEACDINRFLALVGTSESGSEHPIGLAITNYTKEMLGTDESGTLTAFEAVPGFGLKCTVSNIEHICKKTNSFDENDVVHYVEVADMSPATNGIFTDDKCAIMIGNREWINQNGIALPNQVDHLMMRQEEKGQTAVLVAVNGHLVGMIAVADTVKKEARFAVQTILRMGVNVVLLTGDNRKTAMAIADQVGIQEVIAEVLPSHKVAAVKALQTKKHKVAMVGDGINDSPALAQADIGIAIGTGTDVAVEAADVVLIKNNLLDVVAAMELSRTTMRRIRINFVYAFLYNIIGVPIAAGIFFPVGVVLQP 3429
+ ++GMTCQSCV SI + + G++ ++SL N P ++ E++ + GF+A + + A G G + + + ++GM C+SCV +IE GV S++VSL N A YD S + + R IE F+V + ++ + + G CS T + I + I+ + +L+GV + V L + + ++ + ++ I D+GF+ CS + + +S+ T P P+ H + + K + I GMTCASCV+NIE+NL K+ GV S +VAL+A K+EI+Y+ + I I LGFEA+++ED A SD ++L I GMTCASCV +IES L + G+ ASVAL TS F+P+++G RDI++ I +GF+AS+++ N N L H I++W+ SFL SL+FG+PV+ +++ Y +I I PGLS+ N + FILCT VQ GG YFYV AYKSL+H ANMDVLIV+AT++AY+YS V+L++AV ++ ++SP+TFF+TPPML VFI+LGRWLE+LAKSKTSEAL+KL+ LQ +A ++ L ++ + E Q P++ LVQRGDI++VVPG K PVDG++++G +MADESLITGE+MPV K G VI GSIN +G++L++ATHVG+DTTLAQI+K+VEEAQ SKAPIQQLADR SG FVP +I MS +TL+ W++IGF++F ++ + + S+ E+ I+FAF+ +I+VLCIACPC+LGLATPTAVMVGTGV AQNGILIKGG+PLE+ HK+KT++FDKTGT+THG P V +V L + + LA+VGT+E+ SEHP+G+A+T Y KE LGT+ G T F+AVPG G+ C VSN+E I + H E + + + +++IGNREW+ +NG+ + + V M E KGQTA+LVA++G L GMIA+AD VK+EA AV T+ MGV+VVL+TGDNRKTA AIA QVGI +V AEVLPSHKVA V+ LQ K KVAMVGDG+NDSPALAQAD+G+AIGTGTDVA+EAADVVLI+N+LLDVVA++ LS+ T+RRIRIN V A +YN++G+PIAAG+F P+G+VLQP
Sbjct: 147 LRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAIKSKVAPLSLGPIDIERLQSTNPKRPLSSANQNFNNSETLGHQGSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPSVISPEELRAAIEDMGFEASVVSESCSTNPLGNHSAGNSMVQTTDGTPTSVQEVAPHTGRLPANHAPDILAKSPQSTRAVAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQRNPNA-HHLDHKMEIKQWKKSFLCSLVFGIPVMALMI-YMLIPSNEPHQSMVLDHNIIPGLSILNLIFFILCTFVQLLGGWYFYVQAYKSLRHRSANMDVLIVLATSIAYVYSLVILVVAVAEKAERSPVTFFDTPPMLFVFIALGRWLEHLAKSKTSEALAKLMSLQATEATVVTLGEDNLIIREEQVPME--LVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIMSTLTLVVWIVIGFIDFGVVQRYFPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAGSLPAEKDAV--PQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNKGKKVAMVGDGVNDSPALAQADMGVAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLVLALIYNLVGIPIAAGVFMPIGIVLQP 1352 HSP 2 Score: 133.65 bits (335), Expect = 4.147e-31 Identity = 106/377 (28.12%), Postives = 183/377 (48.54%), Query Frame = 1
Query: 67 ISIKGMTCQSCVQSISNALSEQPGIIEYEISLQNNNGKFKINPDVVTSENIIQCLEGCGFDALLVNDGAGENGLTE-------VLVNVEGMTCQSCVTSIENLFMNYKGVSSVEVSLANHNALFVYDKSIANEKDIIRVIEDAGFEV--------------------------PMTTVDMDTSNVTEDLGNCSVTHV-----YIESLETQKEAFYIKESLEKLDGVFSVRVHLTSKSGIIKHSLEETNVNDIIVFINDL---GFQCSLKAVDLRRSSHSVSSLTTPAIQSSPSRHEDEESVTKLIVSINGMTCASCVANIEKNLNKKEGVRSCVVALLAQKSEIRYERVLTDADSIVSTINQLGFEASIIEDGASSD 1074
+ I GMTCQSCV+SI + +S GII ++SL+ + K P VV + + + GF+A + A V + VEGMTCQSCV+SIE +GV V+VSL+N A+ Y + +D+ + D GFE P+++ + + +N +E LG+ +HV I+ + + I+E++ +L GV S++V L +K+ +K+ T+ + I L F+ SL D S + ++ SP R++ + + + +++I GMTCASCV +IE +++ EGV+ V+L + + Y + + + + I +GFEAS++ + S++
Sbjct: 62 VRILGMTCQSCVKSIEDRISNLKGIISMKVSLEQGSATVKYVPSVVCLQQVCHQIGDMGFEASIAEGKAASWPSRSLPAQEAVVKLRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAIKSKVAPLSLGPIDIERLQSTNPKRPLSSANQNFNN-SETLGHQG-SHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVSLP--DGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPSVISPEELRAAIEDMGFEASVVSESCSTN 434 HSP 3 Score: 97.4413 bits (241), Expect = 5.718e-20 Identity = 53/149 (35.57%), Postives = 83/149 (55.70%), Query Frame = 1
Query: 859 VSINGMTCASCVANIEKNLNKKEGVRSCVVALLAQKSEIRYERVLTDADSIVSTINQLGFEASIIEDGASS---------DVTLDLQIEGMTCASCVSSIESTLLKLPGMISASVALTTSSGKFTFNPDLLGTRDIVEKINNLGFNASI 1278
V I GMTC SCV +IE ++ +G+ S V+L + ++Y + + I +GFEASI E A+S + + L++EGMTC SCVSSIE + KL G++ V+L+ T+ P L+ D+ + +N++GF A+I
Sbjct: 62 VRILGMTCQSCVKSIEDRISNLKGIISMKVSLEQGSATVKYVPSVVCLQQVCHQIGDMGFEASIAEGKAASWPSRSLPAQEAVVKLRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAI 210 The following BLAST results are available for this feature:
BLAST of TCONS_00018840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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