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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018838 ID=TCONS_00018838|Name=TCONS_00018838|organism=Clytia hemisphaerica|type=transcript|length=4742bpRun BLAST on NCBI transcript from alignment at sc0000309:114575..135213- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018838 ID=TCONS_00018838|Name=TCONS_00018838|organism=Clytia hemisphaerica|type=transcript|length=20639bp|location=Sequence derived from alignment at sc0000309:114575..135213- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018838 vs. Swiss-Prot (Human)
Match: ATP7B (Copper-transporting ATPase 2 OS=Homo sapiens GN=ATP7B PE=1 SV=4) HSP 1 Score: 1014.22 bits (2621), Expect = 0.000e+0 Identity = 534/1098 (48.63%), Postives = 730/1098 (66.48%), Query Frame = 2
Query: 110 VNVEGMTCQSCVTSIENLFMNYKGVSSVEVSLANHNALFVYDKSIANEKDIIRVIE---DAGFEVPM--------------TTVDMDTSNVTEDLGNCSVTHVYIESLETQKEAFYIKESLEKLDGVFSVRVHLTSKLGIIKHSLEETNVNDIIVFINDLGFQ-------CSLKAVDLRRSSHSVSSLT----------TPAIQSSPSRHEDE-----------ESVTKLIVSINGMTCASCVANIEKNLNKKEGVRSCVVALLAQKSEIRYERVLTDADSIVSTINQLGFEASIIEDGASSDVTLDLQIEGMTCASCVSSIESTLLKLPGMISASVALTTSSGKFTFNPDLLGTRDIVEKINNLGFNASISKYNDNKLEALSHAKTIQRWRGSFLVSLIFGVPVLCVVLTYSVIGEQTGFY-------ISPGLSLQNFLLFILCTPVQFFGGRYFYVMAYKSLKHGIANMDVLIVMATTVAYIYSFVVLLLAVIQQPQKSPMTFFETPPMLLVFISLGRWLENLAKSKTSEALSKLLQLQPADAILIKLNKNTGAV-ESQTPIDIDLVQRGDILQVVPGSKVPVDGRIVDGFSMADESLITGESMPVAKTVGDPVIGGSINQNGTLLMEATHVGSDTTLAQIIKMVEEAQTSKAPIQQLADRISGVFVPIVIAMSLMTLITWLIIGFVNFELITHNYNTVDY--SRIEITIQFAFRCAISVLCIACPCALGLATPTAVMVGTGVGAQNGILIKGGEPLEITHKVKTIIFDKTGTLTHGKPVVTKVHLYVKKEACDINRFLALVGTSESGSEHPIGLAITNYTKEMLGTDESGTLTAFEAVPGFGLKCTVSNIEHICKKTNSFDENDVVHYVEVADMSPATNGIFTDDKCAIMIGNREWINQNGIALPNQVDHLMMRQEEKGQTAVLVAVNGHLVGMIAVADTVKKEARFAVQTILRMGVNVVLLTGDNRKTAMAIADQVGIQEVIAEVLPSHKVAAVKALQTKKHKVAMVGDGINDSPALAQADIGIAIGTGTDVAVEAADVVLIKNNLLDVVAAMELSRTTMRRIRINFVYAFLYNIIGVPIAAGIFFPVGVVLQP 3238
+ ++GM C+SCV +IE GV S++VSL N A YD S + + R IE F+V + ++ + + G CS T + I + I+ + +L+GV + V L + ++ + ++ I D+GF+ CS + + +S+ T P P+ H + + K + I GMTCASCV+NIE+NL K+ GV S +VAL+A K+EI+Y+ + I I LGFEA+++ED A SD ++L I GMTCASCV +IES L + G+ ASVAL TS F+P+++G RDI++ I +GF+AS+++ N N L H I++W+ SFL SL+FG+PV+ +++ Y +I I PGLS+ N + FILCT VQ GG YFYV AYKSL+H ANMDVLIV+AT++AY+YS V+L++AV ++ ++SP+TFF+TPPML VFI+LGRWLE+LAKSKTSEAL+KL+ LQ +A ++ L ++ + E Q P++ LVQRGDI++VVPG K PVDG++++G +MADESLITGE+MPV K G VI GSIN +G++L++ATHVG+DTTLAQI+K+VEEAQ SKAPIQQLADR SG FVP +I MS +TL+ W++IGF++F ++ + + S+ E+ I+FAF+ +I+VLCIACPC+LGLATPTAVMVGTGV AQNGILIKGG+PLE+ HK+KT++FDKTGT+THG P V +V L + + LA+VGT+E+ SEHP+G+A+T Y KE LGT+ G T F+AVPG G+ C VSN+E I + H E + + + +++IGNREW+ +NG+ + + V M E KGQTA+LVA++G L GMIA+AD VK+EA AV T+ MGV+VVL+TGDNRKTA AIA QVGI +V AEVLPSHKVA V+ LQ K KVAMVGDG+NDSPALAQAD+G+AIGTGTDVA+EAADVVLI+N+LLDVVA++ LS+ T+RRIRIN V A +YN++G+PIAAG+F P+G+VLQP
Sbjct: 261 LRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPSVISPEELRAAIEDMGFEASVVSESCSTNPLGNHSAGNSMVQTTDGTPTSVQEVAPHTGRLPANHAPDILAKSPQSTRAVAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLAQRNPNA-HHLDHKMEIKQWKKSFLCSLVFGIPVMALMI-YMLIPSNEPHQSMVLDHNIIPGLSILNLIFFILCTFVQLLGGWYFYVQAYKSLRHRSANMDVLIVLATSIAYVYSLVILVVAVAEKAERSPVTFFDTPPMLFVFIALGRWLEHLAKSKTSEALAKLMSLQATEATVVTLGEDNLIIREEQVPME--LVQRGDIVKVVPGGKFPVDGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIMSTLTLVVWIVIGFIDFGVVQRYFPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCKEELGTETLGYCTDFQAVPGCGIGCKVSNVEGILAHSERPLSAPASHLNEAGSLPAEKDAV--PQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIADAVKQEAALAVHTLQSMGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNKGKKVAMVGDGVNDSPALAQADMGVAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLVLALIYNLVGIPIAAGVFMPIGIVLQP 1352 HSP 2 Score: 135.191 bits (339), Expect = 1.341e-31 Identity = 103/366 (28.14%), Postives = 172/366 (46.99%), Query Frame = 2
Query: 110 VNVEGMTCQSCVTSIENLFMNYKGVSSVEVSLANHNALFVYDKSIANEKDIIRVIEDAGFEVPMTTVDMDTSNVTEDLGNCSVTHVYIESLETQKEAFYIKESLEKLDGVFSVRVHLTSKLGIIKHSLEETNVNDIIVFINDLGFQCSLKA---------VDLRR-----SSHSVSSLTTPAIQSSPSRHEDEESVTKLIVSINGMTCASCVANIEKNLNKKEGVRSCVVALLAQKSEIRYERVLTDADSIVSTINQL---GFEASIIE--DGASSD---------------------VTLDLQIEGMTCASCVSSIESTLLKLPGMISASVALTTSSGKFTFNPDLLGTRDIVEKINNLGFNASI 1087
V + GMTCQSCV SIE+ N KG+ S++VSL +A Y S+ + + I D GFE + + +V + +E + Q I+ + KL GV V+V L+++ +I + D+ +ND+GF+ ++K+ +D+ R +SS S H+ VT L + I+GM C SCV NIE+N+ + GV+S V+L + ++++Y+ T ++ I L F+ S+ + +G+ +D T + I GMTCASCV SIE + +L G+ SV+L + +NP ++ ++ I ++GF AS+
Sbjct: 62 VRILGMTCQSCVKSIEDRISNLKGIISMKVSLEQGSATVKYVPSVVCLQQVCHQIGDMGFEASIAEGKAASWPSRSLPAQEAVVKLRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAIKSKVAPLSLGPIDIERLQSTNPKRPLSSANQNFNNSETLGHQGSHVVT-LQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPSVISPEELRAAIEDMGFEASV 426 HSP 3 Score: 99.3673 bits (246), Expect = 1.186e-20 Identity = 88/335 (26.27%), Postives = 156/335 (46.57%), Query Frame = 2
Query: 2 PDVVTSENIIQCLEGCGFDALLVNDGAGENGLTE-------VLVNVEGMTCQSCVTSIENLFMNYKGVSSVEVSLANHNALFVYDKSIANEKDIIRVIEDAGFEV--------------------------PMTTVDMDTSNVTEDLGNCSVTHV-----YIESLETQKEAFYIKESLEKLDGVFSVRVHLTSKLGIIKHSLEETNVNDIIVFINDL---GFQCSLKAVDLRRSSHSVSSLTTPAIQSSPSRHEDEESVTKLIVSINGMTCASCVANIEKNLNKKEGVRSCVVALLAQKSEIRYERVLTDADSIVSTINQLGFEASIIEDGASSD 883
P VV + + + GF+A + A V + VEGMTCQSCV+SIE +GV V+VSL+N A+ Y + +D+ + D GFE P+++ + + +N +E LG+ +HV I+ + + I+E++ +L GV S++V L +K +K+ T+ + I L F+ SL D S + ++ SP R++ + + + +++I GMTCASCV +IE +++ EGV+ V+L + + Y + + + + I +GFEAS++ + S++
Sbjct: 104 PSVVCLQQVCHQIGDMGFEASIAEGKAASWPSRSLPAQEAVVKLRVEGMTCQSCVSSIEGKVRKLQGVVRVKVSLSNQEAVITYQPYLIQPEDLRDHVNDMGFEAAIKSKVAPLSLGPIDIERLQSTNPKRPLSSANQNFNN-SETLGHQG-SHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVSLP--DGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPSVISPEELRAAIEDMGFEASVVSESCSTN 434 The following BLAST results are available for this feature:
BLAST of TCONS_00018838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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