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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018826 ID=TCONS_00018826|Name=TCONS_00018826|organism=Clytia hemisphaerica|type=transcript|length=571bp
GTGAACATCCCTTTGTGGAGAGAATCAAATGAGCTTGCTATCATCTTCAG
ACCTCCACCCTCTGACCTCTTTGGACCAGCTGGTGAAGCGATCGATTTCT
CTGCGAACACCGATTCGAAAGAAACAAAGCCTGGTATTAGTTACGCACCA
AGAGTTTGCAGTTTCCACAAGGAAGACATCGTCAAAAATCTACCTGCAAG
CAGTTTCAACGTTTCCTACCCCTGTTCAACACCAGCTGAAAATATACGTT
TTGGTGAAGTAGGCTTGGAAATTTGCGGTGAAGGTGAAGAGATATTGGTt
aataaaaaatggattttcactTACAATCTGACCATCGATCTGAAAGAATT
TTATAGCATCACAATGATCAAGATATCAGACGCTGAAGATCCTGAACGCT
TGGATCAAttgtcttctttcaatcttcTCTACTCAACGGATGGTATCCAC
TTTCAAGACCATCATGAGAAAAAGGAATCTATACGTCGTTCAGACGGTCC
ACAAGGAAAGACGGAATATATAACGTTAGGTCATCCCATCCTTCGTGCTC
GCTGGCTGAGGATTATTCCGG Run BLAST on NCBI transcript from alignment at sc0000309:321221..322894+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018826 ID=TCONS_00018826|Name=TCONS_00018826|organism=Clytia hemisphaerica|type=transcript|length=1674bp|location=Sequence derived from alignment at sc0000309:321221..322894+ (Clytia hemisphaerica)
GTGAACATCCCTTTGTGGAGAGAATCAAATGAGCTTGCTATCATCTTCAG
ACCTCCACCCTCTGACCTCTTTGGACCAGCTGGTGAAGCGATCGATTTCT
CTGCGAACACCGATTCGAAAGAAACAAAGCCTGGTATTAGTTACGCACCA
AGAGGTAATCTTTTTTAATAGTCATGATTTCATTATTACCCTGAAAAAAT
GAAGCGAACAACAGCAGGAAATTTCCCATAAGCCGAAAATGGCCGAAAAT
GAATATTTAAATAATTATTATATTGTCTATTTCGGTTGATTTTTTTAGAG
ATATGTCTTTAACACCCCTCTCTCCCTCTAACTAAATTTTAAacttattt
tagtttaatagaCTTTTGTGGATTCAGTTCAGGGGGTCATCAAACACTTA
TAAaacatttaaaggttttgtttttaaataagagtgatatcttttgctta
ctcatcaatttgaATTTACAAgccttttcacattgaattCACATGGATGT
AGATCAAGATTggtaagaaagaagaaaagaaaaatattttgctgtttatt
cagcacaatataacaatagggagacactgtcctgatatgaattatgtgtc
tgatatgaaacgggaaaagTTATGTGATAATAATTAAGCTAACCAACAAT
CGAATCATTCTCTCGGTCAATAATTTCATGTATTTCATTTTGTTACAGTT
TGCAGTTTCCACAAGGAAGACATCGTCAAAAATCTACCTGCAAGCAGTTT
CAACGTTTCCTACCCCTGTTCAACACCAGCTGAAAATATACGTTTTGGTG
AAGTAGGCTTGGAAATTTGCGGTGAAGGTGAAGAGATATTGGTtaataaa
aaatggattttcactTACAATCTGACCATCGATCTGAAAGAATTTTATAG
CATCACAATGATCAAGATATCAGACGCTGAAGATCCTGAACGCTTGGATC
AAttgtcttctttcaatcttcTCTACTCAACGGATGGTATCCACTTTCAA
GACCATCATGAGGTAAGAAAAAAAACCTCTCATAATGACTGCTtaaggct
ggtctccacttgcgcgcgcttcgatcgcactcttttttgagcaaagcttc
cacgctattggtcaaaagaaaaatgaaacgagtccattggcgcgatctga
cgtaacggttgaaaaaagttgtaaTGTGTTCTACCTTTTTTCAAGCGCGT
GCTACattttcatgacgtaatcttttttttccaagcataaaggattgaag
ccaaaagatACGATCGCATTGCGAGCAAGTGGAGACTGACCTTTATTTGT
GGCATAAAAACATTGAACAATGATGAACGATATTTTTTTGATACCCATTC
TCTTTTATAAGTCACcgtaaatgaaatgaaattacaACTTGCAGATACTG
AAACAGGAGAATATGGACGCCCTCAAAGTTTCATGCGATATTCTGAAAGC
TTTGACATTAGTAGTTTGGTAAATCctataatttattgaaaaagtaTAAA
CCCTCTTTAAAAGTTTCCAAGATGGGTAGATATGACAAAAGTgacatttt
catttctttcttcttgTGCAGAAAAAGGAATCTATACGTCGTTCAGACGG
TCCACAAGGAAAGACGGAATATATAACGTTAGGTCATCCCATCCTTCGTG
CTCGCTGGCTGAGGATTATTCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018826-exon-sc0000309-1491911889:321221..321374 | TCONS_00018826-exon-sc0000309-1491911889:321221..321374 | Clytia hemisphaerica | exon |
| TCONS_00018826-exon-sc0000309-1510915933:321221..321374 | TCONS_00018826-exon-sc0000309-1510915933:321221..321374 | Clytia hemisphaerica | exon |
| TCONS_00018826-exon-sc0000309-1575043694:321221..321374 | TCONS_00018826-exon-sc0000309-1575043694:321221..321374 | Clytia hemisphaerica | exon |
| TCONS_00018826-exon-sc0000309-1491911889:321919..322232 | TCONS_00018826-exon-sc0000309-1491911889:321919..322232 | Clytia hemisphaerica | exon |
| TCONS_00018826-exon-sc0000309-1510915933:321919..322232 | TCONS_00018826-exon-sc0000309-1510915933:321919..322232 | Clytia hemisphaerica | exon |
| TCONS_00018826-exon-sc0000309-1575043694:321919..322232 | TCONS_00018826-exon-sc0000309-1575043694:321919..322232 | Clytia hemisphaerica | exon |
| TCONS_00018826-exon-sc0000309-1491911889:322792..322894 | TCONS_00018826-exon-sc0000309-1491911889:322792..322894 | Clytia hemisphaerica | exon |
| TCONS_00018826-exon-sc0000309-1510915933:322792..322894 | TCONS_00018826-exon-sc0000309-1510915933:322792..322894 | Clytia hemisphaerica | exon |
| TCONS_00018826-exon-sc0000309-1575043694:322792..322894 | TCONS_00018826-exon-sc0000309-1575043694:322792..322894 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:321221..322894 + |
Blast
The following BLAST results are available for this feature:
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