TCONS_00018817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018817
Unique NameTCONS_00018817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018817 ID=TCONS_00018817|Name=TCONS_00018817|organism=Clytia hemisphaerica|type=transcript|length=3671bp
AAACAAGCTGGCGGATTCATGCATGATCAGTAGACcataagatttttaaa
aaatggaaattttcaaacatcaTCGATCACTGTTTGAAATAGAAAGTGTT
GATAAACATGTAGTTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGN
AGTGTTGATAAACATGTAGTTTCCACGAACTCGGAAGCAATTAGCTCGTC
TACAGATCTTGATATCAGCCAAACTTTGCAGGATGAAGCTGCTGCATTGC
AAAGTGAACCCAAAACAATCACAAAGAATGAAGATGGCAACACTCAGAGT
TGCAGTCAAAAGTCAGGTCATGGAGGTGTCAATCAACTTGGTGGTGCCTT
TGTCAACGGAAGACCTTTACCAGAGCGCATTCGGAAGAAGATAGTGGACC
TTGCTCATCAAGGAGTTCGCCCTTGTGATATATCGAGACAATTACGCGTT
TCTCATGGTTGTGTGCAATCCCGATTCCTATCGGAGCTTTACCGGCAAAT
CTGAACTCGTTGAATAAGTTACCACACACACCATACTCCGTGAATGGGAT
CCTCGGGATAGCTGTTCAACAACCAAACGGAACTGTCATTATGTGTCCAC
CTGAATATTTTGCAGCACACCAAGTTCAAGGGGCCACTGACTTGTCACCC
ACTGAACATACCAATGGAATGGCAATCCAAGTGGTGAACGAAGCTGAAGA
TTCTCACACTATGGCTGACACACCTAATTTAGCTGCTGCACAATacttaA
TACCGATCGGGTCAACGGAGGACAATCAGAACTTGGTGCAAATCAACTAC
CCTCCATCATTACCTTCTCTCGAAGCAGAAACTGTTGAGAAAGAACATCC
CCTACCACAACCTCCGTCTTCACTTGTCGAAGACGTTTCCATTCCTCCAA
CCAAACTACACATCAATACAACCAGCATTGAGAATAAACTGAAGGAGAAC
ATTGATAACAGTATCTCAGCCTCCAATAAAATCTTGATGAAGACAACACT
GAACATCAACACAGACTCTCAAGAAGAGGAACCATTGCGTGTCCACCAAT
CACCTTCACCCACCACTAAATACATCTACACCAACCCATCACACCAAGAA
GAGGAGAACTACGAAGCAAGACATCCACTGCAAATCCAACCAGCTTTCTT
TCCCAACAGTCCTCAAACATCCCCGGTCTCTAAGCATTTCCTCGAACACG
ACCGCAAACCAGGTCGACGTTTAAGGACGTCTTTTTCCACCGAACAAAAA
CAAGCGTTAGAAGTGGCCTTCAAGAAAACACCGTACCCTGACGCCATCCA
ACGAGAACAACTGGCCACCAAAAATCAAATTCCGGAAGCCAGAGTACAGG
TTTGGTTTTCGAATAAAAGAGCCAAGCATCGGCGGCTGGACAAAAACTTC
GACTTGCTGAAACCATCTAAGAGAAGAAATTCCAAAAGCATCGAATCTCC
ATTATCTCCACCATATCATCCACACATGACACCAACATACGTTCCTTTAT
CACAACAACATTCACAAATCTTTCATCCATCTCTTATCCCCATCATACCA
GCAGCAGGCCAACAAATCGCTCTCATTTCGCCATCACATCTTTATAACAG
TGTCCCTCCATCGTCGAAGGAATCTGTTGAAGAACATTCGAAGAAAACGA
ACGAGCCAACGCCAGTAGCAACAGCCAATGAACATTCCCCTAAAAATATA
ACATACATTACTGCACCTACATTGAATTCTGAACAGCCAACAATGATACC
GATTGGGGCGGTTCACCACCGCACACACACGGAAGAAGCGATGGAAGAAA
TGCCGCAAAGTAAGCCACCACACAACCAACAGTTGGTATATTACGTCATC
CAACCTGCACTCACTGAGAATCCGCCTCTTTACGGATCTCCTTACCATCG
TCTCTGTCCTCCTTCTCCTTCCAACGAATATGAACATGAAAGTCGAACGT
TCAAAGATGAGGAGGTTTCTGATGTTGTCCAAATAAGAGAACAAAAAACT
TCTTATACTTCTCTTAGAGATCTCGTTGGCACTTAGATATATCACTAACA
TTGGTGCTTTTTCAATGAATCAGCTAAATTTCATAGAAGTCTAACGTCAG
TCTATTCTGAGAGAAATTTCTTAGATTGAAAGTCTTAAATGTTCTTAGAT
TTTGGGCTTTTTGTTCGTCTTAGACTTTAGTGGGAAATAATTTTATGTCA
TAgtgtaaaaatgtttttctgtttAGTTAGCCAGTTTGAAAGTCATTCGA
AGTAACATTTTGTTGGTTTTCTGCTCCTCAGGACCTGAACAGACTAATCT
TGACACGACTGACGACTCACCATTGACAATAACAAATGCTAACTTACATT
CTAACAACCTCACTAACAACACTGAAACTGAAGAATCCAAACATGTTCTT
CCTTCCATGAAAGTTTTGACAAGATACAACGATCGTCACCATCCATCACT
TTCTCATTCTTTCATCCCACCCGAAcaatggttgaaaaattcggCTGCTA
TCGCTCTTGGCGGTCGAGCTTCATGgacaTCTCCCTTGACACCGTCACCT
CCTCCGTTACATGTTGTCTCATCTTCTGGACAATGATGATGATTTTCTGG
GAAACTTTGCTGTGCAAATATACCAATGCGGTGAAATCACCATCATTGTG
ACAATTAACGATTACTAACAACACAAATTAACTACTTTACAATAACATCA
TTTACATTTACATCTACTTGCTTGTTGGAATCTTTAAGAGTAGTAGGAGG
TAACAGGGCACTTTTTAAAGTTCTGAAATGAGTCCACTCAGCAGGTTGTC
AATGACGTGTCTAAGGATATTTTTGGCATAATAGGCTTTAGATATTAGAT
ATTCGATTATATTTAgagattttgggaatttttaCGATTGTGATCGTGAC
GagagtaaaataatttttgtaggCCCTGTTGGTACTTGTTCCCAAAGTGT
ACACAAGCATTTATTATCCGGCTTGGTATTCTGCCTGAAAaggtacaaaa
agaaagagctagagggctttttagaaataagatcataaatcttttttgaa
aatcagagatcCTCGAGCCTCCATAATAGTTAACTCCTTTGCGAACAAAG
CTAGAGCattatttgttttttgaaaCAATGGAGGAGGGACAATTTTTTCT
CTCCACCGGTCACTTTAGTCGGTTATctagtgtctataataattccttgg
TGTATTTTTAGGAATATTTTGGTTCGTTTGTCTTTTGGGACTGGTGGACG
GGTTCTTCACCAAAGTTAAGTGCTGAGCGCTGATTATCTTCAAAAGTATA
TTCAGCATTCCACATTTCAACTCTTGTATTATTAAACCTATGAACTTCTA
CAAAACCAAACGGTGTGACGTGACGACTGACGACTTTTCGTTATCGTCCC
CTGAAATTAGTAGATTTCATGTTCAATGTCCTTTTCATCATACGCAGAGT
ACAGAAtagaatattttttattaatttttctagttttttttttggaattg
taAAAAATTATCTATATGGatgttaaaatttcttttagagtcgagttttt
atatataaatagtataatttcgttatttttggtATGGACTTTTTATCCAT
AATTTTTTGGAGCaaattttgggaatatttaaAATGGAATTAATCAATGa
atttattctttcaattttctt
Run BLAST on NCBI

transcript from alignment at sc0000309:152356..163277+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018817 ID=TCONS_00018817|Name=TCONS_00018817|organism=Clytia hemisphaerica|type=transcript|length=10922bp|location=Sequence derived from alignment at sc0000309:152356..163277+ (Clytia hemisphaerica)
AAACAAGCTGGCGGATTCATGCATGATCAGTAGACcataagatttttaaa
aaatggaaattttcaaacatcaTCGATCACTGTTTGAAATAGAAAGTGTT
GATAAACATGTAGTTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGN
AGTGTTGATAAACATGTAGTTTCCACGAACTCGGAAGCAATTAGCTCGTC
TACAGATCTTGATATCAGCCAAACTTTGCAGGATGAAGCTGCTGCATTGC
AAAGTGAACCCAAAACAATCACAAAGAATGAAGATGGCAACACTCAGAGT
TGCAGTCAAAAGTCAGGTATAAACTTTTCAGTCATGTTTAACTTATCATA
CTAAAAACCTTGCTGTATATCTtactgtgagatcgggtaacttgcatcag
tggaggctaacatgcatagccctcaaatgaaggACTCGTCTGGTcattta
aaaatacaaagttaaatcaaaacaaaaatcgtaGAGTaaagctgcgagcg
gagctgaatatagtttattttaatgaccagccaggtcactcattttaggg
ctatgcatgttagcgtccactgatgcaagttacccactctcacggtagTA
TACTAAAGACATAATATTGTTATGATGGGGTACCCAGTGTGTCAGCGTGA
gtccaggcgtagttaatcgatataatcgataatcttgagtaatcgataaa
taatcgataagtaatcgaatGGATtagacagtcaggcacatcctggcaaa
tgaacgggtatttttcacttgcgaccattggcaaatgaacggggtcgaaa
acgaaagtgacgtaatagcgccgaatacccagtttaattgaaccgggttg
gaaatatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTG
TAGGCCCTATGCTACCAggggattggattcaattcaaaagtacatcccaa
ttgagatcagcgaaaaatgttgcttttaatttcgcgaaaatggcgaaaat
ttgagaaatcgagaaatttaatctcgcgaaaatggcgaaagttaatccaa
ttaaagtaccactccctaaaatctgaGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAATCACGAATCGATAGTTGATCGATTAACTATTTGATCgatgatt
aatcaatttttgatcgatatgtaatcgatcaaaagctgtgatcgatagcc
GATCAATTTTAAatcgatacttaatttaattgaagtataatcgatctata
atcgataaacaatcgatgacaaaattgatcgataaataatcaagctttga
aaaaatcttaagTATCGATTACCTTTCGATtttatcggttaatcgatatc
taatccggatcgattacttatcgattatttatcgattactcaaaattatc
gattatatcgattaactacgcctggctTAGTTTATAAAGATTCCTGTTTA
TTTATATCGACAGTTTATTTTGCTGGGATTTCTTTTTGCTAATagtccag
acggtactaatcgaacgttcgattgtgatcgaagtaatcaataatgatca
aTAATAATTGAAGGTGATCAGTGACCacttatcgattctatcggtgatcg
aatactcactcAACTCCAAATCATGGCATTTTCTTCgaccattttgattt
gttcgaTCGTTTTGATTACTGTTCAATTACTTTCAATCACTTTCAATCAT
ATTGAATACTTCCGATCATATTGTGTCGGATATGTTTCCTGTAGCAAAGC
GATGGAATCTGAAACCGAGTTTATCTTGtccaataaattttgagactgaG
TTTATTTCCTCCAATAAAAAAACACGCAATTTACACGCGAAAACCACTTT
TGCTTTCTCTGACCAATCAAAATGCGCGATATGGGTTAtttgaggaaacc
cagggcaAGCACACTCAAAAATGGCAGGGAAGTACTGAACAGTTACATCA
TTATgccaaaacattttgttcaaccaccttcacttcaagataggccacca
tataATGAACTTctttttataggatgaaccatattcatatggctttcagc
cttgcactccatcgcaaaggctttcaattttaatgacttttttgactaat
gacaagttaaaaattttcaattttttNtatgtgtttcattgtttcaatgt
ttattgattagttttgataaccaggtaggtccataaaagtatcacttgtt
atatttaagtattaaaaaggcatgcattcaaattataaaggtttaaattt
tttctctgggctatttattaaaatatatcaaataggctctgtgatggagt
gtaCACATGAATATGGTACATCCCttaaaggaagttcattctgtGATGGC
CTCTCTTAGAGTGAGGATGgctgaacaaaatgttttggtcatatcagggg
gggggcacgcagttactacaagacagtatgacacttactaccgtggtggt
actgtattcagaaattatgaaaacagttactacacaatGTAGTAACTGct
ttttgggggtggtgccaaacactaaaactagtacttttggtgtagtaagt
gcttatatttaattctttttaaagaactttcaaaaattttcacaaaaaat
gaatttttttgtgaaaaaattctttgttaaaaaaaatattttaaaataaa
tggacgaaaaaaaatttgaaatttttctcagatccaactttgaaattatg
ctttccctaattatcattgaAATgctctcaacagctgttaaccaagcaaa
ttaaaagaaaatctagcacaaaaatggctttaggttgaaaaataatcgta
atttagggtaatttcgagcatgNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctc
aaaaacaggggtggtacctggtaatcttttctgaaaacagttactaccaa
ggtgtagtaactgcaaagggtggtggtcctgaaaaaaaagtgttgaaaaa
gcacttactacacatcatgtcttgtagtaactgcgtgcccccctgGGTCA
TATTGATGTATATAACTGCTGAAGGTGATTCTTATGGCTTCTTTTTGTGG
TTTGGTTTTaggtcaatgtttttggtttttccaaGGTATCTAGATGTAAT
CAATCAACTggttatcgaagtaatcaattggttatcgaaagtaatcaata
acaatcaaagtactcaaaCGATTACCGAGTCTtcgaagggttgttaagaa
agtgatcgaagactcatcacaatttttttgaaattttgatacttGAAATT
TGATTATTAATCGATAAATGGTTGTTCGATTACTTCGNtcacaatttttt
tgaaattttgatacttgaaatttgattgttaaTCGACAAATGGTTGTTTG
ATTACTTCAATCATAATAATCGAATGtatcgattagtaccgtctggaatA
GTCACTATCGAAGGGAGTACAAAACACTTATTTGATTTATTCTCTTTGAT
TTAGTGGCTTACTGGTCATGTGGCTTACCCTACCTAGAAATTTTGAAGGC
TGAGTTCTCAATAATAGAAACAGTCAGAAATATACTTTCTTTTCAGCATT
GCCAGCAAAGGGCTAATTTTTCATTAGATGCACTGATTTGTGGCTTAGAG
TTTGTTAAGTGGGCAAAAATGTGGCTTACACAAGGGAAATATAGGTGAAA
AGGTGAATTTAGGTGAATATGTAGGTGAAATATCTGGAAATAAAGGTGAA
ATTTTATGTCTCAtattttcagtgttttttcCAAGCACCCAAATGCCCCC
GTTAGACGGTGGCattaaactcaattcaaattgagttcattgataaattc
tataattttaaccgttttaaagtGCTAGTTAATGGTTAAGACAAAAATAG
GCTCAGCTTTCTGTGAACCCCCCACCAGGGCTAGCCCTGGACCCACCGGG
GGCTcgagggccccccccccccgggggggggggcccccccccccgggggg
gggggcccccccccccgggggggggggcccccccccccgggggggggggg
gggcgtggCCCCCCCCGTGGGTCCAGGGCTAGCCCTGGACCCACAGGGGG
CTCAAGGCGCCCCCAGCCTCTGATATCGCGGCTTACGCCTTTgttaaaaa
ctcaatttgaaagtaCAAACGGAGGCATTGCTTGGTGCTTCATTAAAGTA
TAACACCAGTAGgtgtaaaaaattacaaaaaatttgttgtaaaagtacaa
ttttgtggcttacaaagtcacattaaaaattatcgaaaagtaagccacaa
aaaaactacattttaaaacagctagaaagtatgtacatttaacatctttt
taaaaattcaacctttcctctGTCAAATTAAGAAAGTCCCATTCTAAGAT
GGCTTATCTAATTTGTGTGGCTTACATTACTAAAAAAGATACGAATTTTG
AGTTGAAGCCACATTTTTAGCCcaattaacaaagaaaaaaactttattca
TAATGTCTTAGTATTTCCCACAacattgtaaaatttcaagacTTATCGAT
TAAGACTTCATCAGCTAtgacaaaaagttgtttttgggcatttttcaaaa
tgtcacactatttttgattggGATCAGCTATAGAAGACTTACGTCGCATT
AGATTCCCAAACTTCTCAAAGGGATTTGAGCCAAGGCCCTCAGTTAGAGA
TTGTGTTATGCTTTTCTAGATCTCTAGACACAGGTGTCTTAGTCGAGCAA
GATAATTCCTATGTGGAAAAGGTTAATTTTCAAATCTTGTATTTTGCTAA
CATaacattaaaaaaacaattgCACAGGAGTAGCCCTCTTCTCTTACTCT
TACCTTAATAAGGTAATTAACTTTGGCTAGAACTAATTTTGGTCTGgagc
aaaaatcataaaattcatGAATTGAGGAACTTACTTTGGGAAGGGagaat
ttaacttttttgcccaaaaatgaGTGTTTTCATCGTTTTATCTCTAGGTC
ATGGAGGTGTCAATCAACTTGGTGGTGCCTTTGTCAACGGAAGACCTTTA
CCAGAGCGCATTCGGAAGAAGATAGTGGACCTTGCTCATCAAGGAGTTCG
CCCTTGTGATATATCGAGACAATTACGCGTTTCTCATGGTTGTGTAAGTA
AAATACTCGGACGTTATTACGAGACAGGTTCTATAAGACCTGGAGTTATT
GGAGGAAGTAAACCCAAAGTTGCCACACCCTCAGTCGTTCAAAAGATATC
AGAATATAAACTGAATAACCCTTCAATGTTTGCATGGGAAATTCGAGAAA
AGTTATTGAGTGACCTGATATGTGACAATGAAACTGTTCCCAGTGTAAGC
TCTATAAACCGTATAGTTCGAAACAGGCTTGCTTCAGGTAGTCTTTCCAA
AGAACCAACAGAAGAGGAGATAGACACATCAACCAACGAAATCATCAAAG
AAGAAGAACCCACTAATGAGAATCCTGTTTTTCAAGGTGCAATCCCGATT
CCTATCGGAGCTTTACCGGCAAATCTGAACTCGTTGAATAAGTTACCACA
CACACCATACTCCGTGAATGGGATCCTCGGGATAGCTGTTCAACAACCAA
ACGGAACTGTCATTATGTGTCCACCTGAATATTTTGCAGCACACCAAGTT
CAAGGGGCCACTGACTTGTCACCCACTGAACATACCAATGGAATGGCAAT
CCAAGTGGTGAACGAAGCTGAAGATTCTCACACTATGGCTGACACACCTA
ATTTAGCTGCTGCACAATGTGattttttagtttaatttttcgattttttc
tctTTCGAACCccttgaaaactatcaaaagGCAGCCTACCTAGATTACTA
TTGGAGAGCTCCATGGAAGTGTCAACCTCTACGGAATCTGTCTTtctttc
attacttttgatagaaacatccatttaaaattaaatttggtgaCAAGTTT
AGCACTTTATTCTGCCAAATGccaaatatttttcttgatgttcaaaaata
ttaaatatgaaaaaatggTAAAAGACAAAACTGACGGATTTACCCAACAA
TATTGTGAGGGCATTGCTGTTAAAAATGGTTGTCTTTTGGTCATGAAGTT
TAAAAATCGCACGTAAGGCcataattttggaaattataATGAACATGACA
TATCGACTCTTTATCTGTTGATCTTAAAGTAGACTGATTTTCTGTCAAAT
TCTTACATCATGATAGGAATTGTTCAAGAATAACTTCAGGGTTGTGTAAA
ACTTCTTGATTTTATCAGCcttaatcttcaaaattttcagacttaATACC
GATCGGGTCAACGGAGGACAATCAGAACTTGGTGCAAATCAACTACCCTC
CATCATTACCTTCTCTCGAAGCAGAAACTGTTGAGAAAGAACATCCCCTA
CCACAACCTCCGTCTTCACTTGTCGAAGACGTTTCCATTCCTCCAACCAA
ACTACACATCAATACAACCAGCATTGAGAATAAACTGAAGGAGAACATTG
ATAACAGTATCTCAGCCTCCAATAAAATCTTGATGAAGACAACACTGAAC
ATCAACACAGACTCTCAAGAAGAGGAACCATTGCGTGTCCACCAATCACC
TTCACCCACCACTAAATACATCTACACCAACCCATCACACCAAGAAGAGG
AGAACTACGAAGCAAGACATCCACTGCAAATCCAACCAGCTTTCTTTCCC
AACAGTCCTCAAACATCCCCGGTCTCTAAGCATTTCCTCGAACACGACCG
CAAACCAGGTCGACGTTTAAGGACGTCTTTTTCCACCGAACAAAAACAAG
CGTTAGAAGTGGCCTTCAAGAAAACACCGTACCCTGACGCCATCCAACGA
GAACAACTGGCCACCAAAAATCAAATTCCGGAAGCCAGAGTACAGGTTGG
TTAGGTTTTGTGTTTTTTAAGTGGAGTATCTCAATAAATAtagaaatagt
tttgaaaatacGTTGAATGATTCGATCTTCTAATCAAAAGGATTGTAATC
GAATGAAATTCCAAGCCTTTCAAACAAACAATCTTTCCTTAATCCTACAA
TAGAATAACAAATAAAATTATCTTCGTTTTTAAGGTTTGGTTTTCGAATA
AAAGAGCCAAGCATCGGCGGCTGGACAAAAACTTCGACTTGCTGAAACCA
TCTAAGAGAAGAAATTCCAAAAGCATCGAATCTCCATTATCTCCACCATA
TCATCCACACATGACACCAACATACGTTCCTTTATCACAACAACATTCAC
AAATCTTTCATCCATCTCTTATCCCCATCATACCAGCAGCAGGCCAACAA
ATCGCTCTCATTTCGCCATCACATCTTTATAACAGTGTCCCTCCATCGTC
GAAGGAATCTGTTGAAGAACATTCGAAGAAAACGAACGAGCCAACGCCAG
TAGCAACAGCCAATGAACATTCCCCTAAAAATATAACATACATTACTGCA
CCTACATTGAATTCTGAACAGCCAACAATGATACCGATTGGGGCGGTTCA
CCACCGCACACACACGGAAGAAGCGATGGAAGAAATGCCGCAAAGTAAGC
CACCACACAACCAACAGTTGGTATATTACGTCATCCAACCTGCACTCACT
GAGAATCCGCCTCTTTACGGATCTCCTTACCATCGTCTCTGTCCTCCTTC
TCCTTCCAACGAATATGAACATGAAAGTCGAACGTTCAAAGATGAGGAGG
TTTCTGATGTTGTCCAAATAAGAGAACAAAAAACTTCTTATACTTCTCTT
AGAGATCTCGTTGGCACTTAGATATATCACTAACATTGGTGCTTTTTCAA
TGAATCAGCTAAATTTCATAGAAGTCTAACGTCAGTCTATTCTGAGAGAA
ATTTCTTAGATTGAAAGTCTTAAATGTTCTTAGATTTTGGGCTTTTTGTT
CGTCTTAGACTTTAGTGGGAAATAATTTTATGTCATAgtgtaaaaatgtt
tttctgtttAGTTAGCCAGTTTGAAAGTCATTCGAAGTAACATTTTGTTG
GTTTTCTGCTCCTCAGGACCTGAACAGACTAATCTTGACACGACTGACGA
CTCACCATTGACAATAACAAATGCTAACTTACATTCTAACAACCTCACTA
ACAACACTGAAACTGAAGAATCCAAACATGTTCTTCCTTCCATGAAAGTT
TTGACAAGATACAACGATCGTCACCATCCATCACTTTCTCATTCTTTCAT
CCCACCCGAAcaatggttgaaaaattcggCTGCTATCGCTCTTGGCGGTC
GAGCTTCATGGTAAGTAAACACCTTTTTACGAGCGATTCTTGCTTGCATT
GAAGTATTCAAACATTTAGAAAAGAAATGAGATCGTACACAATACTTTAC
AGAAACTAATTCGGGAGGTTAGTTTTAACAACCAGCAAAAGTCCTACTTT
AATCGGGTTAAATattgcgagattaaatttcgcgatcgaaaaaaatcgca
aaattttctggGTTTAATTTCACAggtcagagttttgaaaaatttcgcgt
ggatttaatttcgcgaataagcctgaaaacagATGAAAAATGTTTCGCTT
CAAATGGAGACTTTGAACTGGTTTCTCCGCCAAAATtgcgattttaaaaa
ttttgcagtaaaaaaaaattcgcgacatcgcgaaatttaatctcgcgaaa
gttaatccgattaaagtagaaaatttgacgAGTGATTTTGCCTTTGATGA
ATATTTGGCTAAATTCCCcaaaatcattaaaatcaaaTCACTTAATAATA
AACAACCTCTGTCTGAAGGTGGGAGGGAAATATATGTTTGCGTCGTTTCT
AAACCAGAAAAGCGCAAAAGCCTTGAGATATCTAACGTTTcgaaggtttt
tgttttttggggGTGTCAAGAAAGGGGAACAGACGTCTTTCTGCATTTCG
AACTTATTGCTTGTACGATCAGAAACATCAGGTGATATGCGATAAATTGA
TtggagttttattttatttttttcaggacaTCTCCCTTGACACCGTCACC
TCCTCCGTTACATGTTGTCTCATCTTCTGGACAATGATGATGATTTTCTG
GGAAACTTTGCTGTGCAAATATACCAATGCGGTGAAATCACCATCATTGT
GACAATTAACGATTACTAACAACACAAATTAACTACTTTACAATAACATC
ATTTACATTTACATCTACTTGCTTGTTGGAATCTTTAAGAGTAGTAGGAG
GTAACAGGGCACTTTTTAAAGTTCTGAAATGAGTCCACTCAGCAGGTTGT
CAATGACGTGTCTAAGGATATTTTTGGCATAATAGGCTTTAGATATTAGA
TATTCGATTATATTTAgagattttgggaatttttaCGATTGTGATCGTGA
CGagagtaaaataatttttgtaggCCCTGTTGGTACTTGTTCCCAAAGTG
TACACAAGCATTTATTATCCGGCTTGGTATTCTGCCTGAAAaggtacaaa
aagaaagagctagagggctttttagaaataagatcataaatcttttttga
aaatcagagatcCTCGAGCCTCCATAATAGTTAACTCCTTTGCGAACAAA
GCTAGAGCattatttgttttttgaaaCAATGGAGGAGGGACAATTTTTTC
TCTCCACCGGTCACTTTAGTCGGTTATctagtgtctataataattccttg
gTGTATTTTTAGGAATATTTTGGTTCGTTTGTCTTTTGGGACTGGTGGAC
GGGTTCTTCACCAAAGTTAAGTGCTGAGCGCTGATTATCTTCAAAAGTAT
ATTCAGCATTCCACATTTCAACTCTTGTATTATTAAACCTATGAACTTCT
ACAAAACCAAACGGTGTGACGTGACGACTGACGACTTTTCGTTATCGTCC
CCTGAAATTAGTAGATTTCATGTTCAATGTCCTTTTCATCATACGCAGAG
TACAGAAtagaatattttttattaatttttctagttttttttttggaatt
gtaAAAAATTATCTATATGGatgttaaaatttcttttagagtcgagtttt
tatatataaatagtataatttcgttatttttggtATGGACTTTTTATCCA
TAATTTTTTGGAGCaaattttgggaatatttaaAATGGAATTAATCAATG
aatttattctttcaattttctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010541XLOC_010541Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018817-exon-sc0000309-1491911889:152356..152671TCONS_00018817-exon-sc0000309-1491911889:152356..152671Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1510915933:152356..152671TCONS_00018817-exon-sc0000309-1510915933:152356..152671Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1575043694:152356..152671TCONS_00018817-exon-sc0000309-1575043694:152356..152671Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1491911889:158153..158298TCONS_00018817-exon-sc0000309-1491911889:158153..158298Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1510915933:158153..158298TCONS_00018817-exon-sc0000309-1510915933:158153..158298Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1575043694:158153..158298TCONS_00018817-exon-sc0000309-1575043694:158153..158298Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1491911889:158642..158923TCONS_00018817-exon-sc0000309-1491911889:158642..158923Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1510915933:158642..158923TCONS_00018817-exon-sc0000309-1510915933:158642..158923Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1575043694:158642..158923TCONS_00018817-exon-sc0000309-1575043694:158642..158923Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1491911889:159446..160050TCONS_00018817-exon-sc0000309-1491911889:159446..160050Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1510915933:159446..160050TCONS_00018817-exon-sc0000309-1510915933:159446..160050Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1575043694:159446..160050TCONS_00018817-exon-sc0000309-1575043694:159446..160050Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1491911889:160240..161415TCONS_00018817-exon-sc0000309-1491911889:160240..161415Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1510915933:160240..161415TCONS_00018817-exon-sc0000309-1510915933:160240..161415Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1575043694:160240..161415TCONS_00018817-exon-sc0000309-1575043694:160240..161415Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1491911889:162132..163277TCONS_00018817-exon-sc0000309-1491911889:162132..163277Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1510915933:162132..163277TCONS_00018817-exon-sc0000309-1510915933:162132..163277Clytia hemisphaericaexon
TCONS_00018817-exon-sc0000309-1575043694:162132..163277TCONS_00018817-exon-sc0000309-1575043694:162132..163277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:152356..163277 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.246274	0.264783	0.215311	0	2.77725	2.48942	0.343564	3.71671	0	0	0	0	0	0	0	0.119161	1.21459e-08	0	0	0	0.833837	0	0	0.296643	0.518692	1.8707	0.571254	3.31523e-06	0.3132	0
Blast
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BLAST of TCONS_00018817 vs. Swiss-Prot (Human)
Match: PAX8 (Paired box protein Pax-8 OS=Homo sapiens GN=PAX8 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.302e-24
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:  304 SQKSGHGGVNQLGGAFVNGRPLPERIRKKIVDLAHQGVRPCDISRQLRVSHGCVQSRFLSELY 492
            S +SGHGG+NQLGGAFVNGRPLPE +R++IVDLAHQGVRPCDISRQLRVSHGCV S+ L   Y
Sbjct:    5 SIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCV-SKILGRYY 66
The following BLAST results are available for this feature:
BLAST of TCONS_00018817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAX81.302e-2479.37Paired box protein Pax-8 OS=Homo sapiens GN=PAX8 P... [more]
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