TCONS_00018816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018816
Unique NameTCONS_00018816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018816 ID=TCONS_00018816|Name=TCONS_00018816|organism=Clytia hemisphaerica|type=transcript|length=3553bp
CAGTCACGCCCGACTGATCACAAACTGGAGAAGACAAACAAGCTGGCGGA
TTCATGCATGATCAGTAGACcataagatttttaaaaaatggaaattttca
aacatcaTCGATCACTGTTTGAAATAGAAAGTGTTGATAAACATGTAGTT
TCCACGAACTCGGAAGCAATTAGCTCGTCTACAGNAGTGTTGATAAACAT
GTAGTTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGATCTTGATAT
CAGCCAAACTTTGCAGGATGAAGCTGCTGCATTGCAAAGTGAACCCAAAA
CAATCACAAAGAATGAAGATGGCAACACTCAGAGTTGCAGTCAAAAGTCA
GGTCATGGAGGTGTCAATCAACTTGGTGGTGCCTTTGTCAACGGAAGACC
TTTACCAGAGCGCATTCGGAAGAAGATAGTGGACCTTGCTCATCAAGGAG
TTCGCCCTTGTGATATATCGAGACAATTACGCGTTTCTCATGGTTGTCAC
ACCAAGTTCAAGGGGCCACTGACTTGTCACCCACTGAACATACCAATGGA
ATGGCAATCCAAGTGGTGAACGAAGCTGAAGATTCTCACACTATGGCTGA
CACACCTAATTTAGCTGCTGCACAATacttaATACCGATCGGGTCAACGG
AGGACAATCAGAACTTGGTGCAAATCAACTACCCTCCATCATTACCTTCT
CTCGAAGCAGAAACTGTTGAGAAAGAACATCCCCTACCACAACCTCCGTC
TTCACTTGTCGAAGACGTTTCCATTCCTCCAACCAAACTACACATCAATA
CAACCAGCATTGAGAATAAACTGAAGGAGAACATTGATAACAGTATCTCA
GCCTCCAATAAAATCTTGATGAAGACAACACTGAACATCAACACAGACTC
TCAAGAAGAGGAACCATTGCGTGTCCACCAATCACCTTCACCCACCACTA
AATACATCTACACCAACCCATCACACCAAGAAGAGGAGAACTACGAAGCA
AGACATCCACTGCAAATCCAACCAGCTTTCTTTCCCAACAGTCCTCAAAC
ATCCCCGGTCTCTAAGCATTTCCTCGAACACGACCGCAAACCAGGTCGAC
GTTTAAGGACGTCTTTTTCCACCGAACAAAAACAAGCGTTAGAAGTGGCC
TTCAAGAAAACACCGTACCCTGACGCCATCCAACGAGAACAACTGGCCAC
CAAAAATCAAATTCCGGAAGCCAGAGTACAGGTTTGGTTTTCGAATAAAA
GAGCCAAGCATCGGCGGCTGGACAAAAACTTCGACTTGCTGAAACCATCT
AAGAGAAGAAATTCCAAAAGCATCGAATCTCCATTATCTCCACCATATCA
TCCACACATGACACCAACATACGTTCCTTTATCACAACAACATTCACAAA
TCTTTCATCCATCTCTTATCCCCATCATACCAGCAGCAGGCCAACAAATC
GCTCTCATTTCGCCATCACATCTTTATAACAGTGTCCCTCCATCGTCGAA
GGAATCTGTTGAAGAACATTCGAAGAAAACGAACGAGCCAACGCCAGTAG
CAACAGCCAATGAACATTCCCCTAAAAATATAACATACATTACTGCACCT
ACATTGAATTCTGAACAGCCAACAATGATACCGATTGGGGCGGTTCACCA
CCGCACACACACGGAAGAAGCGATGGAAGAAATGCCGCAAAGTAAGCCAC
CACACAACCAACAGTTGGTATATTACGTCATCCAACCTGCACTCACTGAG
AATCCGCCTCTTTACGGATCTCCTTACCATCGTCTCTGTCCTCCTTCTCC
TTCCAACGAATATGAACATGAAAGTCGAACGTTCAAAGATGAGGAGGTTT
CTGATGTTGTCCAAATAAGAGAACAAAAAACTTCTTATACTTCTCTTAGA
GATCTCGTTGGCACTTAGATATATCACTAACATTGGTGCTTTTTCAATGA
ATCAGCTAAATTTCATAGAAGTCTAACGTCAGTCTATTCTGAGAGAAATT
TCTTAGATTGAAAGTCTTAAATGTTCTTAGATTTTGGGCTTTTTGTTCGT
CTTAGACTTTAGTGGGAAATAATTTTATGTCATAgtgtaaaaatgttttt
ctgtttAGTTAGCCAGTTTGAAAGTCATTCGAAGTAACATTTTGTTGGTT
TTCTGCTCCTCAGGACCTGAACAGACTAATCTTGACACGACTGACGACTC
ACCATTGACAATAACAAATGCTAACTTACATTCTAACAACCTCACTAACA
ACACTGAAACTGAAGAATCCAAACATGTTCTTCCTTCCATGAAAGTTTTG
ACAAGATACAACGATCGTCACCATCCATCACTTTCTCATTCTTTCATCCC
ACCCGAAcaatggttgaaaaattcggCTGCTATCGCTCTTGGCGGTCGAG
CTTCATGgacaTCTCCCTTGACACCGTCACCTCCTCCGTTACATGTTGTC
TCATCTTCTGGACAATGATGATGATTTTCTGGGAAACTTTGCTGTGCAAA
TATACCAATGCGGTGAAATCACCATCATTGTGACAATTAACGATTACTAA
CAACACAAATTAACTACTTTACAATAACATCATTTACATTTACATCTACT
TGCTTGTTGGAATCTTTAAGAGTAGTAGGAGGTAACAGGGCACTTTTTAA
AGTTCTGAAATGAGTCCACTCAGCAGGTTGTCAATGACGTGTCTAAGGAT
ATTTTTGGCATAATAGGCTTTAGATATTAGATATTCGATTATATTTAgag
attttgggaatttttaCGATTGTGATCGTGACGagagtaaaataattttt
gtaggCCCTGTTGGTACTTGTTCCCAAAGTGTACACAAGCATTTATTATC
CGGCTTGGTATTCTGCCTGAAAaggtacaaaaagaaagagctagagggct
ttttagaaataagatcataaatcttttttgaaaatcagagatcCTCGAGC
CTCCATAATAGTTAACTCCTTTGCGAACAAAGCTAGAGCattatttgttt
tttgaaaCAATGGAGGAGGGACAATTTTTTCTCTCCACCGGTCACTTTAG
TCGGTTATctagtgtctataataattccttggTGTATTTTTAGGAATATT
TTGGTTCGTTTGTCTTTTGGGACTGGTGGACGGGTTCTTCACCAAAGTTA
AGTGCTGAGCGCTGATTATCTTCAAAAGTATATTCAGCATTCCACATTTC
AACTCTTGTATTATTAAACCTATGAACTTCTACAAAACCAAACGGTGTGA
CGTGACGACTGACGACTTTTCGTTATCGTCCCCTGAAATTAGTAGATTTC
ATGTTCAATGTCCTTTTCATCATACGCAGAGTACAGAAtagaatattttt
tattaatttttctagttttttttttggaattgtaAAAAATTATCTATATG
Gatgttaaaatttcttttagagtcgagtttttatatataaatagtataat
ttcgttatttttggtATGGACTTTTTATCCATAATTTTTTGGAGCaaatt
ttgggaatatttaaAATGGAATTAATCAATGaatttattctttcaatttt
ctt
Run BLAST on NCBI

transcript from alignment at sc0000309:152321..163277+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018816 ID=TCONS_00018816|Name=TCONS_00018816|organism=Clytia hemisphaerica|type=transcript|length=10957bp|location=Sequence derived from alignment at sc0000309:152321..163277+ (Clytia hemisphaerica)
CAGTCACGCCCGACTGATCACAAACTGGAGAAGACAAACAAGCTGGCGGA
TTCATGCATGATCAGTAGACcataagatttttaaaaaatggaaattttca
aacatcaTCGATCACTGTTTGAAATAGAAAGTGTTGATAAACATGTAGTT
TCCACGAACTCGGAAGCAATTAGCTCGTCTACAGNAGTGTTGATAAACAT
GTAGTTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGATCTTGATAT
CAGCCAAACTTTGCAGGATGAAGCTGCTGCATTGCAAAGTGAACCCAAAA
CAATCACAAAGAATGAAGATGGCAACACTCAGAGTTGCAGTCAAAAGTCA
GGTATAAACTTTTCAGTCATGTTTAACTTATCATACTAAAAACCTTGCTG
TATATCTtactgtgagatcgggtaacttgcatcagtggaggctaacatgc
atagccctcaaatgaaggACTCGTCTGGTcatttaaaaatacaaagttaa
atcaaaacaaaaatcgtaGAGTaaagctgcgagcggagctgaatatagtt
tattttaatgaccagccaggtcactcattttagggctatgcatgttagcg
tccactgatgcaagttacccactctcacggtagTATACTAAAGACATAAT
ATTGTTATGATGGGGTACCCAGTGTGTCAGCGTGAgtccaggcgtagtta
atcgatataatcgataatcttgagtaatcgataaataatcgataagtaat
cgaatGGATtagacagtcaggcacatcctggcaaatgaacgggtattttt
cacttgcgaccattggcaaatgaacggggtcgaaaacgaaagtgacgtaa
tagcgccgaatacccagtttaattgaaccgggttggaaatatNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGTAGGCCCTATGCTAC
CAggggattggattcaattcaaaagtacatcccaattgagatcagcgaaa
aatgttgcttttaatttcgcgaaaatggcgaaaatttgagaaatcgagaa
atttaatctcgcgaaaatggcgaaagttaatccaattaaagtaccactcc
ctaaaatctgaGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCACGAAT
CGATAGTTGATCGATTAACTATTTGATCgatgattaatcaatttttgatc
gatatgtaatcgatcaaaagctgtgatcgatagccGATCAATTTTAAatc
gatacttaatttaattgaagtataatcgatctataatcgataaacaatcg
atgacaaaattgatcgataaataatcaagctttgaaaaaatcttaagTAT
CGATTACCTTTCGATtttatcggttaatcgatatctaatccggatcgatt
acttatcgattatttatcgattactcaaaattatcgattatatcgattaa
ctacgcctggctTAGTTTATAAAGATTCCTGTTTATTTATATCGACAGTT
TATTTTGCTGGGATTTCTTTTTGCTAATagtccagacggtactaatcgaa
cgttcgattgtgatcgaagtaatcaataatgatcaaTAATAATTGAAGGT
GATCAGTGACCacttatcgattctatcggtgatcgaatactcactcAACT
CCAAATCATGGCATTTTCTTCgaccattttgatttgttcgaTCGTTTTGA
TTACTGTTCAATTACTTTCAATCACTTTCAATCATATTGAATACTTCCGA
TCATATTGTGTCGGATATGTTTCCTGTAGCAAAGCGATGGAATCTGAAAC
CGAGTTTATCTTGtccaataaattttgagactgaGTTTATTTCCTCCAAT
AAAAAAACACGCAATTTACACGCGAAAACCACTTTTGCTTTCTCTGACCA
ATCAAAATGCGCGATATGGGTTAtttgaggaaacccagggcaAGCACACT
CAAAAATGGCAGGGAAGTACTGAACAGTTACATCATTATgccaaaacatt
ttgttcaaccaccttcacttcaagataggccaccatataATGAACTTctt
tttataggatgaaccatattcatatggctttcagccttgcactccatcgc
aaaggctttcaattttaatgacttttttgactaatgacaagttaaaaatt
ttcaattttttNtatgtgtttcattgtttcaatgtttattgattagtttt
gataaccaggtaggtccataaaagtatcacttgttatatttaagtattaa
aaaggcatgcattcaaattataaaggtttaaattttttctctgggctatt
tattaaaatatatcaaataggctctgtgatggagtgtaCACATGAATATG
GTACATCCCttaaaggaagttcattctgtGATGGCCTCTCTTAGAGTGAG
GATGgctgaacaaaatgttttggtcatatcagggggggggcacgcagtta
ctacaagacagtatgacacttactaccgtggtggtactgtattcagaaat
tatgaaaacagttactacacaatGTAGTAACTGctttttgggggtggtgc
caaacactaaaactagtacttttggtgtagtaagtgcttatatttaattc
tttttaaagaactttcaaaaattttcacaaaaaatgaatttttttgtgaa
aaaattctttgttaaaaaaaatattttaaaataaatggacgaaaaaaaat
ttgaaatttttctcagatccaactttgaaattatgctttccctaattatc
attgaAATgctctcaacagctgttaaccaagcaaattaaaagaaaatcta
gcacaaaaatggctttaggttgaaaaataatcgtaatttagggtaatttc
gagcatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctcaaaaacaggggtggt
acctggtaatcttttctgaaaacagttactaccaaggtgtagtaactgca
aagggtggtggtcctgaaaaaaaagtgttgaaaaagcacttactacacat
catgtcttgtagtaactgcgtgcccccctgGGTCATATTGATGTATATAA
CTGCTGAAGGTGATTCTTATGGCTTCTTTTTGTGGTTTGGTTTTaggtca
atgtttttggtttttccaaGGTATCTAGATGTAATCAATCAACTggttat
cgaagtaatcaattggttatcgaaagtaatcaataacaatcaaagtactc
aaaCGATTACCGAGTCTtcgaagggttgttaagaaagtgatcgaagactc
atcacaatttttttgaaattttgatacttGAAATTTGATTATTAATCGAT
AAATGGTTGTTCGATTACTTCGNtcacaatttttttgaaattttgatact
tgaaatttgattgttaaTCGACAAATGGTTGTTTGATTACTTCAATCATA
ATAATCGAATGtatcgattagtaccgtctggaatAGTCACTATCGAAGGG
AGTACAAAACACTTATTTGATTTATTCTCTTTGATTTAGTGGCTTACTGG
TCATGTGGCTTACCCTACCTAGAAATTTTGAAGGCTGAGTTCTCAATAAT
AGAAACAGTCAGAAATATACTTTCTTTTCAGCATTGCCAGCAAAGGGCTA
ATTTTTCATTAGATGCACTGATTTGTGGCTTAGAGTTTGTTAAGTGGGCA
AAAATGTGGCTTACACAAGGGAAATATAGGTGAAAAGGTGAATTTAGGTG
AATATGTAGGTGAAATATCTGGAAATAAAGGTGAAATTTTATGTCTCAta
ttttcagtgttttttcCAAGCACCCAAATGCCCCCGTTAGACGGTGGCat
taaactcaattcaaattgagttcattgataaattctataattttaaccgt
tttaaagtGCTAGTTAATGGTTAAGACAAAAATAGGCTCAGCTTTCTGTG
AACCCCCCACCAGGGCTAGCCCTGGACCCACCGGGGGCTcgagggccccc
cccccccgggggggggggcccccccccccgggggggggggcccccccccc
cgggggggggggcccccccccccgggggggggggggggcgtggCCCCCCC
CGTGGGTCCAGGGCTAGCCCTGGACCCACAGGGGGCTCAAGGCGCCCCCA
GCCTCTGATATCGCGGCTTACGCCTTTgttaaaaactcaatttgaaagta
CAAACGGAGGCATTGCTTGGTGCTTCATTAAAGTATAACACCAGTAGgtg
taaaaaattacaaaaaatttgttgtaaaagtacaattttgtggcttacaa
agtcacattaaaaattatcgaaaagtaagccacaaaaaaactacatttta
aaacagctagaaagtatgtacatttaacatctttttaaaaattcaacctt
tcctctGTCAAATTAAGAAAGTCCCATTCTAAGATGGCTTATCTAATTTG
TGTGGCTTACATTACTAAAAAAGATACGAATTTTGAGTTGAAGCCACATT
TTTAGCCcaattaacaaagaaaaaaactttattcaTAATGTCTTAGTATT
TCCCACAacattgtaaaatttcaagacTTATCGATTAAGACTTCATCAGC
TAtgacaaaaagttgtttttgggcatttttcaaaatgtcacactattttt
gattggGATCAGCTATAGAAGACTTACGTCGCATTAGATTCCCAAACTTC
TCAAAGGGATTTGAGCCAAGGCCCTCAGTTAGAGATTGTGTTATGCTTTT
CTAGATCTCTAGACACAGGTGTCTTAGTCGAGCAAGATAATTCCTATGTG
GAAAAGGTTAATTTTCAAATCTTGTATTTTGCTAACATaacattaaaaaa
acaattgCACAGGAGTAGCCCTCTTCTCTTACTCTTACCTTAATAAGGTA
ATTAACTTTGGCTAGAACTAATTTTGGTCTGgagcaaaaatcataaaatt
catGAATTGAGGAACTTACTTTGGGAAGGGagaatttaacttttttgccc
aaaaatgaGTGTTTTCATCGTTTTATCTCTAGGTCATGGAGGTGTCAATC
AACTTGGTGGTGCCTTTGTCAACGGAAGACCTTTACCAGAGCGCATTCGG
AAGAAGATAGTGGACCTTGCTCATCAAGGAGTTCGCCCTTGTGATATATC
GAGACAATTACGCGTTTCTCATGGTTGTGTAAGTAAAATACTCGGACGTT
ATTACGAGACAGGTTCTATAAGACCTGGAGTTATTGGAGGAAGTAAACCC
AAAGTTGCCACACCCTCAGTCGTTCAAAAGATATCAGAATATAAACTGAA
TAACCCTTCAATGTTTGCATGGGAAATTCGAGAAAAGTTATTGAGTGACC
TGATATGTGACAATGAAACTGTTCCCAGTGTAAGCTCTATAAACCGTATA
GTTCGAAACAGGCTTGCTTCAGGTAGTCTTTCCAAAGAACCAACAGAAGA
GGAGATAGACACATCAACCAACGAAATCATCAAAGAAGAAGAACCCACTA
ATGAGAATCCTGTTTTTCAAGGTGCAATCCCGATTCCTATCGGAGCTTTA
CCGGCAAATCTGAACTCGTTGAATAAGTTACCACACACACCATACTCCGT
GAATGGGATCCTCGGGATAGCTGTTCAACAACCAAACGGAACTGTCATTA
TGTGTCCACCTGAATATTTTGCAGCACACCAAGTTCAAGGGGCCACTGAC
TTGTCACCCACTGAACATACCAATGGAATGGCAATCCAAGTGGTGAACGA
AGCTGAAGATTCTCACACTATGGCTGACACACCTAATTTAGCTGCTGCAC
AATGTGattttttagtttaatttttcgattttttctctTTCGAACCcctt
gaaaactatcaaaagGCAGCCTACCTAGATTACTATTGGAGAGCTCCATG
GAAGTGTCAACCTCTACGGAATCTGTCTTtctttcattacttttgataga
aacatccatttaaaattaaatttggtgaCAAGTTTAGCACTTTATTCTGC
CAAATGccaaatatttttcttgatgttcaaaaatattaaatatgaaaaaa
tggTAAAAGACAAAACTGACGGATTTACCCAACAATATTGTGAGGGCATT
GCTGTTAAAAATGGTTGTCTTTTGGTCATGAAGTTTAAAAATCGCACGTA
AGGCcataattttggaaattataATGAACATGACATATCGACTCTTTATC
TGTTGATCTTAAAGTAGACTGATTTTCTGTCAAATTCTTACATCATGATA
GGAATTGTTCAAGAATAACTTCAGGGTTGTGTAAAACTTCTTGATTTTAT
CAGCcttaatcttcaaaattttcagacttaATACCGATCGGGTCAACGGA
GGACAATCAGAACTTGGTGCAAATCAACTACCCTCCATCATTACCTTCTC
TCGAAGCAGAAACTGTTGAGAAAGAACATCCCCTACCACAACCTCCGTCT
TCACTTGTCGAAGACGTTTCCATTCCTCCAACCAAACTACACATCAATAC
AACCAGCATTGAGAATAAACTGAAGGAGAACATTGATAACAGTATCTCAG
CCTCCAATAAAATCTTGATGAAGACAACACTGAACATCAACACAGACTCT
CAAGAAGAGGAACCATTGCGTGTCCACCAATCACCTTCACCCACCACTAA
ATACATCTACACCAACCCATCACACCAAGAAGAGGAGAACTACGAAGCAA
GACATCCACTGCAAATCCAACCAGCTTTCTTTCCCAACAGTCCTCAAACA
TCCCCGGTCTCTAAGCATTTCCTCGAACACGACCGCAAACCAGGTCGACG
TTTAAGGACGTCTTTTTCCACCGAACAAAAACAAGCGTTAGAAGTGGCCT
TCAAGAAAACACCGTACCCTGACGCCATCCAACGAGAACAACTGGCCACC
AAAAATCAAATTCCGGAAGCCAGAGTACAGGTTGGTTAGGTTTTGTGTTT
TTTAAGTGGAGTATCTCAATAAATAtagaaatagttttgaaaatacGTTG
AATGATTCGATCTTCTAATCAAAAGGATTGTAATCGAATGAAATTCCAAG
CCTTTCAAACAAACAATCTTTCCTTAATCCTACAATAGAATAACAAATAA
AATTATCTTCGTTTTTAAGGTTTGGTTTTCGAATAAAAGAGCCAAGCATC
GGCGGCTGGACAAAAACTTCGACTTGCTGAAACCATCTAAGAGAAGAAAT
TCCAAAAGCATCGAATCTCCATTATCTCCACCATATCATCCACACATGAC
ACCAACATACGTTCCTTTATCACAACAACATTCACAAATCTTTCATCCAT
CTCTTATCCCCATCATACCAGCAGCAGGCCAACAAATCGCTCTCATTTCG
CCATCACATCTTTATAACAGTGTCCCTCCATCGTCGAAGGAATCTGTTGA
AGAACATTCGAAGAAAACGAACGAGCCAACGCCAGTAGCAACAGCCAATG
AACATTCCCCTAAAAATATAACATACATTACTGCACCTACATTGAATTCT
GAACAGCCAACAATGATACCGATTGGGGCGGTTCACCACCGCACACACAC
GGAAGAAGCGATGGAAGAAATGCCGCAAAGTAAGCCACCACACAACCAAC
AGTTGGTATATTACGTCATCCAACCTGCACTCACTGAGAATCCGCCTCTT
TACGGATCTCCTTACCATCGTCTCTGTCCTCCTTCTCCTTCCAACGAATA
TGAACATGAAAGTCGAACGTTCAAAGATGAGGAGGTTTCTGATGTTGTCC
AAATAAGAGAACAAAAAACTTCTTATACTTCTCTTAGAGATCTCGTTGGC
ACTTAGATATATCACTAACATTGGTGCTTTTTCAATGAATCAGCTAAATT
TCATAGAAGTCTAACGTCAGTCTATTCTGAGAGAAATTTCTTAGATTGAA
AGTCTTAAATGTTCTTAGATTTTGGGCTTTTTGTTCGTCTTAGACTTTAG
TGGGAAATAATTTTATGTCATAgtgtaaaaatgtttttctgtttAGTTAG
CCAGTTTGAAAGTCATTCGAAGTAACATTTTGTTGGTTTTCTGCTCCTCA
GGACCTGAACAGACTAATCTTGACACGACTGACGACTCACCATTGACAAT
AACAAATGCTAACTTACATTCTAACAACCTCACTAACAACACTGAAACTG
AAGAATCCAAACATGTTCTTCCTTCCATGAAAGTTTTGACAAGATACAAC
GATCGTCACCATCCATCACTTTCTCATTCTTTCATCCCACCCGAAcaatg
gttgaaaaattcggCTGCTATCGCTCTTGGCGGTCGAGCTTCATGGTAAG
TAAACACCTTTTTACGAGCGATTCTTGCTTGCATTGAAGTATTCAAACAT
TTAGAAAAGAAATGAGATCGTACACAATACTTTACAGAAACTAATTCGGG
AGGTTAGTTTTAACAACCAGCAAAAGTCCTACTTTAATCGGGTTAAATat
tgcgagattaaatttcgcgatcgaaaaaaatcgcaaaattttctggGTTT
AATTTCACAggtcagagttttgaaaaatttcgcgtggatttaatttcgcg
aataagcctgaaaacagATGAAAAATGTTTCGCTTCAAATGGAGACTTTG
AACTGGTTTCTCCGCCAAAATtgcgattttaaaaattttgcagtaaaaaa
aaattcgcgacatcgcgaaatttaatctcgcgaaagttaatccgattaaa
gtagaaaatttgacgAGTGATTTTGCCTTTGATGAATATTTGGCTAAATT
CCCcaaaatcattaaaatcaaaTCACTTAATAATAAACAACCTCTGTCTG
AAGGTGGGAGGGAAATATATGTTTGCGTCGTTTCTAAACCAGAAAAGCGC
AAAAGCCTTGAGATATCTAACGTTTcgaaggtttttgttttttggggGTG
TCAAGAAAGGGGAACAGACGTCTTTCTGCATTTCGAACTTATTGCTTGTA
CGATCAGAAACATCAGGTGATATGCGATAAATTGATtggagttttatttt
atttttttcaggacaTCTCCCTTGACACCGTCACCTCCTCCGTTACATGT
TGTCTCATCTTCTGGACAATGATGATGATTTTCTGGGAAACTTTGCTGTG
CAAATATACCAATGCGGTGAAATCACCATCATTGTGACAATTAACGATTA
CTAACAACACAAATTAACTACTTTACAATAACATCATTTACATTTACATC
TACTTGCTTGTTGGAATCTTTAAGAGTAGTAGGAGGTAACAGGGCACTTT
TTAAAGTTCTGAAATGAGTCCACTCAGCAGGTTGTCAATGACGTGTCTAA
GGATATTTTTGGCATAATAGGCTTTAGATATTAGATATTCGATTATATTT
AgagattttgggaatttttaCGATTGTGATCGTGACGagagtaaaataat
ttttgtaggCCCTGTTGGTACTTGTTCCCAAAGTGTACACAAGCATTTAT
TATCCGGCTTGGTATTCTGCCTGAAAaggtacaaaaagaaagagctagag
ggctttttagaaataagatcataaatcttttttgaaaatcagagatcCTC
GAGCCTCCATAATAGTTAACTCCTTTGCGAACAAAGCTAGAGCattattt
gttttttgaaaCAATGGAGGAGGGACAATTTTTTCTCTCCACCGGTCACT
TTAGTCGGTTATctagtgtctataataattccttggTGTATTTTTAGGAA
TATTTTGGTTCGTTTGTCTTTTGGGACTGGTGGACGGGTTCTTCACCAAA
GTTAAGTGCTGAGCGCTGATTATCTTCAAAAGTATATTCAGCATTCCACA
TTTCAACTCTTGTATTATTAAACCTATGAACTTCTACAAAACCAAACGGT
GTGACGTGACGACTGACGACTTTTCGTTATCGTCCCCTGAAATTAGTAGA
TTTCATGTTCAATGTCCTTTTCATCATACGCAGAGTACAGAAtagaatat
tttttattaatttttctagttttttttttggaattgtaAAAAATTATCTA
TATGGatgttaaaatttcttttagagtcgagtttttatatataaatagta
taatttcgttatttttggtATGGACTTTTTATCCATAATTTTTTGGAGCa
aattttgggaatatttaaAATGGAATTAATCAATGaatttattctttcaa
ttttctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010541XLOC_010541Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018816-exon-sc0000309-1491911889:152321..152671TCONS_00018816-exon-sc0000309-1491911889:152321..152671Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1510915933:152321..152671TCONS_00018816-exon-sc0000309-1510915933:152321..152671Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1575043694:152321..152671TCONS_00018816-exon-sc0000309-1575043694:152321..152671Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1491911889:158153..158298TCONS_00018816-exon-sc0000309-1491911889:158153..158298Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1510915933:158153..158298TCONS_00018816-exon-sc0000309-1510915933:158153..158298Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1575043694:158153..158298TCONS_00018816-exon-sc0000309-1575043694:158153..158298Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1491911889:158795..158923TCONS_00018816-exon-sc0000309-1491911889:158795..158923Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1510915933:158795..158923TCONS_00018816-exon-sc0000309-1510915933:158795..158923Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1575043694:158795..158923TCONS_00018816-exon-sc0000309-1575043694:158795..158923Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1491911889:159446..160050TCONS_00018816-exon-sc0000309-1491911889:159446..160050Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1510915933:159446..160050TCONS_00018816-exon-sc0000309-1510915933:159446..160050Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1575043694:159446..160050TCONS_00018816-exon-sc0000309-1575043694:159446..160050Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1491911889:160240..161415TCONS_00018816-exon-sc0000309-1491911889:160240..161415Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1510915933:160240..161415TCONS_00018816-exon-sc0000309-1510915933:160240..161415Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1575043694:160240..161415TCONS_00018816-exon-sc0000309-1575043694:160240..161415Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1491911889:162132..163277TCONS_00018816-exon-sc0000309-1491911889:162132..163277Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1510915933:162132..163277TCONS_00018816-exon-sc0000309-1510915933:162132..163277Clytia hemisphaericaexon
TCONS_00018816-exon-sc0000309-1575043694:162132..163277TCONS_00018816-exon-sc0000309-1575043694:162132..163277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:152321..163277 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.83864e-08	0	7.74052e-09	0	0	0.864615	0	0	0	0	0	0	0	0	0.0766648	9.46698e-11	0	0	0	0	0	0	0	0.00838868	0	0	0.029838	0	9.71148e-08	0
Blast
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BLAST of TCONS_00018816 vs. Swiss-Prot (Human)
Match: PAX8 (Paired box protein Pax-8 OS=Homo sapiens GN=PAX8 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.604e-24
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 3 
Query:  339 SQKSGHGGVNQLGGAFVNGRPLPERIRKKIVDLAHQGVRPCDISRQLRVSHGCHTKFKG 515
            S +SGHGG+NQLGGAFVNGRPLPE +R++IVDLAHQGVRPCDISRQLRVSHGC +K  G
Sbjct:    5 SIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILG 63
The following BLAST results are available for this feature:
BLAST of TCONS_00018816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAX85.604e-2481.36Paired box protein Pax-8 OS=Homo sapiens GN=PAX8 P... [more]
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