TCONS_00018813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018813
Unique NameTCONS_00018813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018813 ID=TCONS_00018813|Name=TCONS_00018813|organism=Clytia hemisphaerica|type=transcript|length=3997bp
AGGTCAGTCACGCCCGACTGATCACAAACTGGAGAAGACAAACAAGCTGG
CGGATTCATGCATGATCAGTAGACcataagatttttaaaaaatggaaatt
ttcaaacatcaTCGATCACTGTTTGAAATAGAAAGTGTTGATAAACATGT
AGTTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGATCTTGATATCA
GCCAAACTTTGCAGGATGAAGCTGCTGCATTGCAAAGTGAACCCAAAACA
ATCACAAAGAATGAAGATGGCAACACTCAGAGTTGCAGTCAAAAGTCAGG
TCATGGAGGTGTCAATCAACTTGGTGGTGCCTTTGTCAACGGAAGACCTT
TACCAGAGCGCATTCGGAAGAAGATAGTGGACCTTGCTCATCAAGGAGTT
CGCCCTTGTGATATATCGAGACAATTACGCGTTTCTCATGGTTGTGTAAG
TAAAATACTCGGACGTTATTACGAGACAGGTTCTATAAGACCTGGAGTTA
TTGGAGGAAGTAAACCCAAAGTTGCCACACCCTCAGTCGTTCAAAAGATA
TCAGAATATAAACTGAATAACCCTTCAATGTTTGCATGGGAAATTCGAGA
AAAGTTATTGAGTGACCTGATATGTGACAATGAAACTGTTCCCAGTGTAA
GCTCTATAAACCGTATAGTTCGAAACAGGCTTGCTTCAGGTAGTCTTTCC
AAAGAACCAACAGAAGAGGAGATAGACACATCAACCAACGAAATCATCAA
AGAAGAAGAACCCACTAATGAGAATCCTGTTTTTCAAGGTGCAATCCCGA
TTCCTATCGGAGCTTTACCGGCAAATCTGAACTCGTTGAATAAGTTACCA
CACACACCATACTCCGTGAATGGGATCCTCGGGATAGCTGTTCAACAACC
AAACGGAACTGTCATTATGTGTCCACCTGAATATTTTGCAGCACACCAAG
TTCAAGGGGCCACTGACTTGTCACCCACTGAACATACCAATGGAATGGCA
ATCCAAGTGGTGAACGAAGCTGAAGATTCTCACACTATGGCTGACACACC
TAATTTAGCTGCTGCACAATacttaATACCGATCGGGTCAACGGAGGACA
ATCAGAACTTGGTGCAAATCAACTACCCTCCATCATTACCTTCTCTCGAA
GCAGAAACTGTTGAGAAAGAACATCCCCTACCACAACCTCCGTCTTCACT
TGTCGAAGACGTTTCCATTCCTCCAACCAAACTACACATCAATACAACCA
GCATTGAGAATAAACTGAAGGAGAACATTGATAACAGTATCTCAGCCTCC
AATAAAATCTTGATGAAGACAACACTGAACATCAACACAGACTCTCAAGA
AGAGGAACCATTGCGTGTCCACCAATCACCTTCACCCACCACTAAATACA
TCTACACCAACCCATCACACCAAGAAGAGGAGAACTACGAAGCAAGACAT
CCACTGCAAATCCAACCAGCTTTCTTTCCCAACAGTCCTCAAACATCCCC
GGTCTCTAAGCATTTCCTCGAACACGACCGCAAACCAGGTCGACGTTTAA
GGACGTCTTTTTCCACCGAACAAAAACAAGCGTTAGAAGTGGCCTTCAAG
AAAACACCGTACCCTGACGCCATCCAACGAGAACAACTGGCCACCAAAAA
TCAAATTCCGGAAGCCAGAGTACAGGTTTGGTTTTCGAATAAAAGAGCCA
AGCATCGGCGGCTGGACAAAAACTTCGACTTGCTGAAACCATCTAAGAGA
AGAAATTCCAAAAGCATCGAATCTCCATTATCTCCACCATATCATCCACA
CATGACACCAACATACGTTCCTTTATCACAACAACATTCACAAATCTTTC
ATCCATCTCTTATCCCCATCATACCAGCAGCAGGCCAACAAATCGCTCTC
ATTTCGCCATCACATCTTTATAACAGTGTCCCTCCATCGTCGAAGGAATC
TGTTGAAGAACATTCGAAGAAAACGAACGAGCCAACGCCAGTAGCAACAG
CCAATGAACATTCCCCTAAAAATATAACATACATTACTGCACCTACATTG
AATTCTGAACAGCCAACAATGATACCGATTGGGGCGGTTCACCACCGCAC
ACACACGGAAGAAGCGATGGAAGAAATGCCGCAAAGTAAGCCACCACACA
ACCAACAGTTGGTATATTACGTCATCCAACCTGCACTCACTGAGAATCCG
CCTCTTTACGGATCTCCTTACCATCGTCTCTGTCCTCCTTCTCCTTCCAA
CGAATATGAACATGAAAGTCGAACGTTCAAAGATGAGGAGGTTTCTGATG
TTGTCCAAATAAGAGAACAAAAAACTTCTTATACTTCTCTTAGAGATCTC
GTTGGCACTTAGATATATCACTAACATTGGTGCTTTTTCAATGAATCAGC
TAAATTTCATAGAAGTCTAACGTCAGTCTATTCTGAGAGAAATTTCTTAG
ATTGAAAGTCTTAAATGTTCTTAGATTTTGGGCTTTTTGTTCGTCTTAGA
CTTTAGTGGGAAATAATTTTATGTCATAgtgtaaaaatgtttttctgttt
AGTTAGCCAGTTTGAAAGTCATTCGAAGTAACATTTTGTTGGTTTTCTGC
TCCTCAGGACCTGAACAGACTAATCTTGACACGACTGACGACTCACCATT
GACAATAACAAATGCTAACTTACATTCTAACAACCTCACTAACAACACTG
AAACTGAAGAATCCAAACATGTTCTTCCTTCCATGAAAGTTTTGACAAGA
TACAACGATCGTCACCATCCATCACTTTCTCATTCTTTCATCCCACCCGA
AcaatggttgaaaaattcggCTGCTATCGCTCTTGGCGGTCGAGCTTCAT
GgacaTCTCCCTTGACACCGTCACCTCCTCCGTTACATGTTGTCTCATCT
TCTGGACAATGATGATGATTTTCTGGGAAACTTTGCTGTGCAAATATACC
AATGCGGTGAAATCACCATCATTGTGACAATTAACGATTACTAACAACAC
AAATTAACTACTTTACAATAACATCATTTACATTTACATCTACTTGCTTG
TTGGAATCTTTAAGAGTAGTAGGAGGTAACAGGGCACTTTTTAAAGTTCT
GAAATGAGTCCACTCAGCAGGTTGTCAATGACGTGTCTAAGGATATTTTT
GGCATAATAGGCTTTAGATATTAGATATTCGATTATATTTAgagattttg
ggaatttttaCGATTGTGATCGTGACGagagtaaaataatttttgtaggC
CCTGTTGGTACTTGTTCCCAAAGTGTACACAAGCATTTATTATCCGGCTT
GGTATTCTGCCTGAAAaggtacaaaaagaaagagctagagggctttttag
aaataagatcataaatcttttttgaaaatcagagatcCTCGAGCCTCCAT
AATAGTTAACTCCTTTGCGAACAAAGCTAGAGCattatttgttttttgaa
aCAATGGAGGAGGGACAATTTTTTCTCTCCACCGGTCACTTTAGTCGGTT
ATctagtgtctataataattccttggTGTATTTTTAGGAATATTTTGGTT
CGTTTGTCTTTTGGGACTGGTGGACGGGTTCTTCACCAAAGTTAAGTGCT
GAGCGCTGATTATCTTCAAAAGTATATTCAGCATTCCACATTTCAACTCT
TGTATTATTAAACCTATGAACTTCTACAAAACCAAACGGTGTGACGTGAC
GACTGACGACTTTTCGTTATCGTCCCCTGAAATTAGTAGATTTCATGTTC
AATGTCCTTTTCATCATACGCAGAGTACAGAAtagaatattttttattaa
tttttctagttttttttttggaattgtaAAAAATTATCTATATGGatgtt
aaaatttcttttagagtcgagtttttatatataaatagtataatttcgtt
atttttggtATGGACTTTTTATCCATAATTTTTTGGAGCaaattttggga
atatttaaAATGGAATTAATCAATGaatttattctttcaattttctt
Run BLAST on NCBI

transcript from alignment at sc0000309:152317..163277+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018813 ID=TCONS_00018813|Name=TCONS_00018813|organism=Clytia hemisphaerica|type=transcript|length=10961bp|location=Sequence derived from alignment at sc0000309:152317..163277+ (Clytia hemisphaerica)
AGGTCAGTCACGCCCGACTGATCACAAACTGGAGAAGACAAACAAGCTGG
CGGATTCATGCATGATCAGTAGACcataagatttttaaaaaatggaaatt
ttcaaacatcaTCGATCACTGTTTGAAATAGAAAGTGTTGATAAACATGT
AGTTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGNAGTGTTGATAA
ACATGTAGTTTCCACGAACTCGGAAGCAATTAGCTCGTCTACAGATCTTG
ATATCAGCCAAACTTTGCAGGATGAAGCTGCTGCATTGCAAAGTGAACCC
AAAACAATCACAAAGAATGAAGATGGCAACACTCAGAGTTGCAGTCAAAA
GTCAGGTATAAACTTTTCAGTCATGTTTAACTTATCATACTAAAAACCTT
GCTGTATATCTtactgtgagatcgggtaacttgcatcagtggaggctaac
atgcatagccctcaaatgaaggACTCGTCTGGTcatttaaaaatacaaag
ttaaatcaaaacaaaaatcgtaGAGTaaagctgcgagcggagctgaatat
agtttattttaatgaccagccaggtcactcattttagggctatgcatgtt
agcgtccactgatgcaagttacccactctcacggtagTATACTAAAGACA
TAATATTGTTATGATGGGGTACCCAGTGTGTCAGCGTGAgtccaggcgta
gttaatcgatataatcgataatcttgagtaatcgataaataatcgataag
taatcgaatGGATtagacagtcaggcacatcctggcaaatgaacgggtat
ttttcacttgcgaccattggcaaatgaacggggtcgaaaacgaaagtgac
gtaatagcgccgaatacccagtttaattgaaccgggttggaaatatNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGTAGGCCCTATG
CTACCAggggattggattcaattcaaaagtacatcccaattgagatcagc
gaaaaatgttgcttttaatttcgcgaaaatggcgaaaatttgagaaatcg
agaaatttaatctcgcgaaaatggcgaaagttaatccaattaaagtacca
ctccctaaaatctgaGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAC
GAATCGATAGTTGATCGATTAACTATTTGATCgatgattaatcaattttt
gatcgatatgtaatcgatcaaaagctgtgatcgatagccGATCAATTTTA
Aatcgatacttaatttaattgaagtataatcgatctataatcgataaaca
atcgatgacaaaattgatcgataaataatcaagctttgaaaaaatcttaa
gTATCGATTACCTTTCGATtttatcggttaatcgatatctaatccggatc
gattacttatcgattatttatcgattactcaaaattatcgattatatcga
ttaactacgcctggctTAGTTTATAAAGATTCCTGTTTATTTATATCGAC
AGTTTATTTTGCTGGGATTTCTTTTTGCTAATagtccagacggtactaat
cgaacgttcgattgtgatcgaagtaatcaataatgatcaaTAATAATTGA
AGGTGATCAGTGACCacttatcgattctatcggtgatcgaatactcactc
AACTCCAAATCATGGCATTTTCTTCgaccattttgatttgttcgaTCGTT
TTGATTACTGTTCAATTACTTTCAATCACTTTCAATCATATTGAATACTT
CCGATCATATTGTGTCGGATATGTTTCCTGTAGCAAAGCGATGGAATCTG
AAACCGAGTTTATCTTGtccaataaattttgagactgaGTTTATTTCCTC
CAATAAAAAAACACGCAATTTACACGCGAAAACCACTTTTGCTTTCTCTG
ACCAATCAAAATGCGCGATATGGGTTAtttgaggaaacccagggcaAGCA
CACTCAAAAATGGCAGGGAAGTACTGAACAGTTACATCATTATgccaaaa
cattttgttcaaccaccttcacttcaagataggccaccatataATGAACT
Tctttttataggatgaaccatattcatatggctttcagccttgcactcca
tcgcaaaggctttcaattttaatgacttttttgactaatgacaagttaaa
aattttcaattttttNtatgtgtttcattgtttcaatgtttattgattag
ttttgataaccaggtaggtccataaaagtatcacttgttatatttaagta
ttaaaaaggcatgcattcaaattataaaggtttaaattttttctctgggc
tatttattaaaatatatcaaataggctctgtgatggagtgtaCACATGAA
TATGGTACATCCCttaaaggaagttcattctgtGATGGCCTCTCTTAGAG
TGAGGATGgctgaacaaaatgttttggtcatatcagggggggggcacgca
gttactacaagacagtatgacacttactaccgtggtggtactgtattcag
aaattatgaaaacagttactacacaatGTAGTAACTGctttttgggggtg
gtgccaaacactaaaactagtacttttggtgtagtaagtgcttatattta
attctttttaaagaactttcaaaaattttcacaaaaaatgaatttttttg
tgaaaaaattctttgttaaaaaaaatattttaaaataaatggacgaaaaa
aaatttgaaatttttctcagatccaactttgaaattatgctttccctaat
tatcattgaAATgctctcaacagctgttaaccaagcaaattaaaagaaaa
tctagcacaaaaatggctttaggttgaaaaataatcgtaatttagggtaa
tttcgagcatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctcaaaaacagggg
tggtacctggtaatcttttctgaaaacagttactaccaaggtgtagtaac
tgcaaagggtggtggtcctgaaaaaaaagtgttgaaaaagcacttactac
acatcatgtcttgtagtaactgcgtgcccccctgGGTCATATTGATGTAT
ATAACTGCTGAAGGTGATTCTTATGGCTTCTTTTTGTGGTTTGGTTTTag
gtcaatgtttttggtttttccaaGGTATCTAGATGTAATCAATCAACTgg
ttatcgaagtaatcaattggttatcgaaagtaatcaataacaatcaaagt
actcaaaCGATTACCGAGTCTtcgaagggttgttaagaaagtgatcgaag
actcatcacaatttttttgaaattttgatacttGAAATTTGATTATTAAT
CGATAAATGGTTGTTCGATTACTTCGNtcacaatttttttgaaattttga
tacttgaaatttgattgttaaTCGACAAATGGTTGTTTGATTACTTCAAT
CATAATAATCGAATGtatcgattagtaccgtctggaatAGTCACTATCGA
AGGGAGTACAAAACACTTATTTGATTTATTCTCTTTGATTTAGTGGCTTA
CTGGTCATGTGGCTTACCCTACCTAGAAATTTTGAAGGCTGAGTTCTCAA
TAATAGAAACAGTCAGAAATATACTTTCTTTTCAGCATTGCCAGCAAAGG
GCTAATTTTTCATTAGATGCACTGATTTGTGGCTTAGAGTTTGTTAAGTG
GGCAAAAATGTGGCTTACACAAGGGAAATATAGGTGAAAAGGTGAATTTA
GGTGAATATGTAGGTGAAATATCTGGAAATAAAGGTGAAATTTTATGTCT
CAtattttcagtgttttttcCAAGCACCCAAATGCCCCCGTTAGACGGTG
GCattaaactcaattcaaattgagttcattgataaattctataattttaa
ccgttttaaagtGCTAGTTAATGGTTAAGACAAAAATAGGCTCAGCTTTC
TGTGAACCCCCCACCAGGGCTAGCCCTGGACCCACCGGGGGCTcgagggc
cccccccccccgggggggggggcccccccccccgggggggggggcccccc
cccccgggggggggggcccccccccccgggggggggggggggcgtggCCC
CCCCCGTGGGTCCAGGGCTAGCCCTGGACCCACAGGGGGCTCAAGGCGCC
CCCAGCCTCTGATATCGCGGCTTACGCCTTTgttaaaaactcaatttgaa
agtaCAAACGGAGGCATTGCTTGGTGCTTCATTAAAGTATAACACCAGTA
Ggtgtaaaaaattacaaaaaatttgttgtaaaagtacaattttgtggctt
acaaagtcacattaaaaattatcgaaaagtaagccacaaaaaaactacat
tttaaaacagctagaaagtatgtacatttaacatctttttaaaaattcaa
cctttcctctGTCAAATTAAGAAAGTCCCATTCTAAGATGGCTTATCTAA
TTTGTGTGGCTTACATTACTAAAAAAGATACGAATTTTGAGTTGAAGCCA
CATTTTTAGCCcaattaacaaagaaaaaaactttattcaTAATGTCTTAG
TATTTCCCACAacattgtaaaatttcaagacTTATCGATTAAGACTTCAT
CAGCTAtgacaaaaagttgtttttgggcatttttcaaaatgtcacactat
ttttgattggGATCAGCTATAGAAGACTTACGTCGCATTAGATTCCCAAA
CTTCTCAAAGGGATTTGAGCCAAGGCCCTCAGTTAGAGATTGTGTTATGC
TTTTCTAGATCTCTAGACACAGGTGTCTTAGTCGAGCAAGATAATTCCTA
TGTGGAAAAGGTTAATTTTCAAATCTTGTATTTTGCTAACATaacattaa
aaaaacaattgCACAGGAGTAGCCCTCTTCTCTTACTCTTACCTTAATAA
GGTAATTAACTTTGGCTAGAACTAATTTTGGTCTGgagcaaaaatcataa
aattcatGAATTGAGGAACTTACTTTGGGAAGGGagaatttaactttttt
gcccaaaaatgaGTGTTTTCATCGTTTTATCTCTAGGTCATGGAGGTGTC
AATCAACTTGGTGGTGCCTTTGTCAACGGAAGACCTTTACCAGAGCGCAT
TCGGAAGAAGATAGTGGACCTTGCTCATCAAGGAGTTCGCCCTTGTGATA
TATCGAGACAATTACGCGTTTCTCATGGTTGTGTAAGTAAAATACTCGGA
CGTTATTACGAGACAGGTTCTATAAGACCTGGAGTTATTGGAGGAAGTAA
ACCCAAAGTTGCCACACCCTCAGTCGTTCAAAAGATATCAGAATATAAAC
TGAATAACCCTTCAATGTTTGCATGGGAAATTCGAGAAAAGTTATTGAGT
GACCTGATATGTGACAATGAAACTGTTCCCAGTGTAAGCTCTATAAACCG
TATAGTTCGAAACAGGCTTGCTTCAGGTAGTCTTTCCAAAGAACCAACAG
AAGAGGAGATAGACACATCAACCAACGAAATCATCAAAGAAGAAGAACCC
ACTAATGAGAATCCTGTTTTTCAAGGTGCAATCCCGATTCCTATCGGAGC
TTTACCGGCAAATCTGAACTCGTTGAATAAGTTACCACACACACCATACT
CCGTGAATGGGATCCTCGGGATAGCTGTTCAACAACCAAACGGAACTGTC
ATTATGTGTCCACCTGAATATTTTGCAGCACACCAAGTTCAAGGGGCCAC
TGACTTGTCACCCACTGAACATACCAATGGAATGGCAATCCAAGTGGTGA
ACGAAGCTGAAGATTCTCACACTATGGCTGACACACCTAATTTAGCTGCT
GCACAATGTGattttttagtttaatttttcgattttttctctTTCGAACC
ccttgaaaactatcaaaagGCAGCCTACCTAGATTACTATTGGAGAGCTC
CATGGAAGTGTCAACCTCTACGGAATCTGTCTTtctttcattacttttga
tagaaacatccatttaaaattaaatttggtgaCAAGTTTAGCACTTTATT
CTGCCAAATGccaaatatttttcttgatgttcaaaaatattaaatatgaa
aaaatggTAAAAGACAAAACTGACGGATTTACCCAACAATATTGTGAGGG
CATTGCTGTTAAAAATGGTTGTCTTTTGGTCATGAAGTTTAAAAATCGCA
CGTAAGGCcataattttggaaattataATGAACATGACATATCGACTCTT
TATCTGTTGATCTTAAAGTAGACTGATTTTCTGTCAAATTCTTACATCAT
GATAGGAATTGTTCAAGAATAACTTCAGGGTTGTGTAAAACTTCTTGATT
TTATCAGCcttaatcttcaaaattttcagacttaATACCGATCGGGTCAA
CGGAGGACAATCAGAACTTGGTGCAAATCAACTACCCTCCATCATTACCT
TCTCTCGAAGCAGAAACTGTTGAGAAAGAACATCCCCTACCACAACCTCC
GTCTTCACTTGTCGAAGACGTTTCCATTCCTCCAACCAAACTACACATCA
ATACAACCAGCATTGAGAATAAACTGAAGGAGAACATTGATAACAGTATC
TCAGCCTCCAATAAAATCTTGATGAAGACAACACTGAACATCAACACAGA
CTCTCAAGAAGAGGAACCATTGCGTGTCCACCAATCACCTTCACCCACCA
CTAAATACATCTACACCAACCCATCACACCAAGAAGAGGAGAACTACGAA
GCAAGACATCCACTGCAAATCCAACCAGCTTTCTTTCCCAACAGTCCTCA
AACATCCCCGGTCTCTAAGCATTTCCTCGAACACGACCGCAAACCAGGTC
GACGTTTAAGGACGTCTTTTTCCACCGAACAAAAACAAGCGTTAGAAGTG
GCCTTCAAGAAAACACCGTACCCTGACGCCATCCAACGAGAACAACTGGC
CACCAAAAATCAAATTCCGGAAGCCAGAGTACAGGTTGGTTAGGTTTTGT
GTTTTTTAAGTGGAGTATCTCAATAAATAtagaaatagttttgaaaatac
GTTGAATGATTCGATCTTCTAATCAAAAGGATTGTAATCGAATGAAATTC
CAAGCCTTTCAAACAAACAATCTTTCCTTAATCCTACAATAGAATAACAA
ATAAAATTATCTTCGTTTTTAAGGTTTGGTTTTCGAATAAAAGAGCCAAG
CATCGGCGGCTGGACAAAAACTTCGACTTGCTGAAACCATCTAAGAGAAG
AAATTCCAAAAGCATCGAATCTCCATTATCTCCACCATATCATCCACACA
TGACACCAACATACGTTCCTTTATCACAACAACATTCACAAATCTTTCAT
CCATCTCTTATCCCCATCATACCAGCAGCAGGCCAACAAATCGCTCTCAT
TTCGCCATCACATCTTTATAACAGTGTCCCTCCATCGTCGAAGGAATCTG
TTGAAGAACATTCGAAGAAAACGAACGAGCCAACGCCAGTAGCAACAGCC
AATGAACATTCCCCTAAAAATATAACATACATTACTGCACCTACATTGAA
TTCTGAACAGCCAACAATGATACCGATTGGGGCGGTTCACCACCGCACAC
ACACGGAAGAAGCGATGGAAGAAATGCCGCAAAGTAAGCCACCACACAAC
CAACAGTTGGTATATTACGTCATCCAACCTGCACTCACTGAGAATCCGCC
TCTTTACGGATCTCCTTACCATCGTCTCTGTCCTCCTTCTCCTTCCAACG
AATATGAACATGAAAGTCGAACGTTCAAAGATGAGGAGGTTTCTGATGTT
GTCCAAATAAGAGAACAAAAAACTTCTTATACTTCTCTTAGAGATCTCGT
TGGCACTTAGATATATCACTAACATTGGTGCTTTTTCAATGAATCAGCTA
AATTTCATAGAAGTCTAACGTCAGTCTATTCTGAGAGAAATTTCTTAGAT
TGAAAGTCTTAAATGTTCTTAGATTTTGGGCTTTTTGTTCGTCTTAGACT
TTAGTGGGAAATAATTTTATGTCATAgtgtaaaaatgtttttctgtttAG
TTAGCCAGTTTGAAAGTCATTCGAAGTAACATTTTGTTGGTTTTCTGCTC
CTCAGGACCTGAACAGACTAATCTTGACACGACTGACGACTCACCATTGA
CAATAACAAATGCTAACTTACATTCTAACAACCTCACTAACAACACTGAA
ACTGAAGAATCCAAACATGTTCTTCCTTCCATGAAAGTTTTGACAAGATA
CAACGATCGTCACCATCCATCACTTTCTCATTCTTTCATCCCACCCGAAc
aatggttgaaaaattcggCTGCTATCGCTCTTGGCGGTCGAGCTTCATGG
TAAGTAAACACCTTTTTACGAGCGATTCTTGCTTGCATTGAAGTATTCAA
ACATTTAGAAAAGAAATGAGATCGTACACAATACTTTACAGAAACTAATT
CGGGAGGTTAGTTTTAACAACCAGCAAAAGTCCTACTTTAATCGGGTTAA
ATattgcgagattaaatttcgcgatcgaaaaaaatcgcaaaattttctgg
GTTTAATTTCACAggtcagagttttgaaaaatttcgcgtggatttaattt
cgcgaataagcctgaaaacagATGAAAAATGTTTCGCTTCAAATGGAGAC
TTTGAACTGGTTTCTCCGCCAAAATtgcgattttaaaaattttgcagtaa
aaaaaaattcgcgacatcgcgaaatttaatctcgcgaaagttaatccgat
taaagtagaaaatttgacgAGTGATTTTGCCTTTGATGAATATTTGGCTA
AATTCCCcaaaatcattaaaatcaaaTCACTTAATAATAAACAACCTCTG
TCTGAAGGTGGGAGGGAAATATATGTTTGCGTCGTTTCTAAACCAGAAAA
GCGCAAAAGCCTTGAGATATCTAACGTTTcgaaggtttttgttttttggg
gGTGTCAAGAAAGGGGAACAGACGTCTTTCTGCATTTCGAACTTATTGCT
TGTACGATCAGAAACATCAGGTGATATGCGATAAATTGATtggagtttta
ttttatttttttcaggacaTCTCCCTTGACACCGTCACCTCCTCCGTTAC
ATGTTGTCTCATCTTCTGGACAATGATGATGATTTTCTGGGAAACTTTGC
TGTGCAAATATACCAATGCGGTGAAATCACCATCATTGTGACAATTAACG
ATTACTAACAACACAAATTAACTACTTTACAATAACATCATTTACATTTA
CATCTACTTGCTTGTTGGAATCTTTAAGAGTAGTAGGAGGTAACAGGGCA
CTTTTTAAAGTTCTGAAATGAGTCCACTCAGCAGGTTGTCAATGACGTGT
CTAAGGATATTTTTGGCATAATAGGCTTTAGATATTAGATATTCGATTAT
ATTTAgagattttgggaatttttaCGATTGTGATCGTGACGagagtaaaa
taatttttgtaggCCCTGTTGGTACTTGTTCCCAAAGTGTACACAAGCAT
TTATTATCCGGCTTGGTATTCTGCCTGAAAaggtacaaaaagaaagagct
agagggctttttagaaataagatcataaatcttttttgaaaatcagagat
cCTCGAGCCTCCATAATAGTTAACTCCTTTGCGAACAAAGCTAGAGCatt
atttgttttttgaaaCAATGGAGGAGGGACAATTTTTTCTCTCCACCGGT
CACTTTAGTCGGTTATctagtgtctataataattccttggTGTATTTTTA
GGAATATTTTGGTTCGTTTGTCTTTTGGGACTGGTGGACGGGTTCTTCAC
CAAAGTTAAGTGCTGAGCGCTGATTATCTTCAAAAGTATATTCAGCATTC
CACATTTCAACTCTTGTATTATTAAACCTATGAACTTCTACAAAACCAAA
CGGTGTGACGTGACGACTGACGACTTTTCGTTATCGTCCCCTGAAATTAG
TAGATTTCATGTTCAATGTCCTTTTCATCATACGCAGAGTACAGAAtaga
atattttttattaatttttctagttttttttttggaattgtaAAAAATTA
TCTATATGGatgttaaaatttcttttagagtcgagtttttatatataaat
agtataatttcgttatttttggtATGGACTTTTTATCCATAATTTTTTGG
AGCaaattttgggaatatttaaAATGGAATTAATCAATGaatttattctt
tcaattttctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010541XLOC_010541Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018813-exon-sc0000309-1491911889:152317..152462TCONS_00018813-exon-sc0000309-1491911889:152317..152462Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1510915933:152317..152462TCONS_00018813-exon-sc0000309-1510915933:152317..152462Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1575043694:152317..152462TCONS_00018813-exon-sc0000309-1575043694:152317..152462Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1491911889:152519..152671TCONS_00018813-exon-sc0000309-1491911889:152519..152671Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1510915933:152519..152671TCONS_00018813-exon-sc0000309-1510915933:152519..152671Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1575043694:152519..152671TCONS_00018813-exon-sc0000309-1575043694:152519..152671Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1491911889:158153..158923TCONS_00018813-exon-sc0000309-1491911889:158153..158923Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1510915933:158153..158923TCONS_00018813-exon-sc0000309-1510915933:158153..158923Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1575043694:158153..158923TCONS_00018813-exon-sc0000309-1575043694:158153..158923Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1491911889:159446..160050TCONS_00018813-exon-sc0000309-1491911889:159446..160050Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1510915933:159446..160050TCONS_00018813-exon-sc0000309-1510915933:159446..160050Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1575043694:159446..160050TCONS_00018813-exon-sc0000309-1575043694:159446..160050Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1491911889:160240..161415TCONS_00018813-exon-sc0000309-1491911889:160240..161415Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1510915933:160240..161415TCONS_00018813-exon-sc0000309-1510915933:160240..161415Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1575043694:160240..161415TCONS_00018813-exon-sc0000309-1575043694:160240..161415Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1491911889:162132..163277TCONS_00018813-exon-sc0000309-1491911889:162132..163277Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1510915933:162132..163277TCONS_00018813-exon-sc0000309-1510915933:162132..163277Clytia hemisphaericaexon
TCONS_00018813-exon-sc0000309-1575043694:162132..163277TCONS_00018813-exon-sc0000309-1575043694:162132..163277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:152317..163277 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15532	0.124898	0.842196	0.696679	0.908685	0.0247918	6.2577	2.23182	3.25624	2.46768	3.45995	2.71767	2.17595	2.49663	2.31124	1.97554	2.54093	2.7095	1.64365	2.56651	3.31462	4.13407	2.19401	2.47026	3.73621	3.5101	0.104755	1.50325	6.62567	6.61625
Blast
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BLAST of TCONS_00018813 vs. Swiss-Prot (Human)
Match: PAX8 (Paired box protein Pax-8 OS=Homo sapiens GN=PAX8 PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 8.334e-70
Identity = 126/202 (62.38%), Postives = 151/202 (74.75%), Query Frame = 2 
Query:  287 SQKSGHGGVNQLGGAFVNGRPLPERIRKKIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPSVVQKISEYKLNNPSMFAWEIREKLLSDLICDNETVPSVSSINRIVRNRLASGSLSKEPTEEEIDTSTNEIIKEEEPTNENPVFQGAIPIPIGAL-PANLNSLNKLPHTPYSVNGILGIA 889
            S +SGHGG+NQLGGAFVNGRPLPE +R++IVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATP VV+KI +YK  NP+MFAWEIR++LL++ +CDN+TVPSVSSINRI+R ++      ++P    +D+      K   P        G   IP  A+ P      + L  T YS+NG+LGIA
Sbjct:    5 SIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKV------QQPFNLPMDSCV--ATKSLSP--------GHTLIPSSAVTPPESPQSDSLGST-YSINGLLGIA 189
The following BLAST results are available for this feature:
BLAST of TCONS_00018813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAX88.334e-7062.38Paired box protein Pax-8 OS=Homo sapiens GN=PAX8 P... [more]
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