TCONS_00018807 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018807
Unique Name	TCONS_00018807
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1580

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000309:66457..69585+
coding sequence from alignment at sc0000309:66457..69585+

transcript sequence

>TCONS_00018807 ID=TCONS_00018807|Name=TCONS_00018807|organism=Clytia hemisphaerica|type=transcript|length=1580bp
CAAAATTAgtatacaaagaaaaagaaaatttcattttctcacTTGCCGTA
TAACCTAAAAAATTTCGAATGGTTTCTTTCGAAAATCTCGGAGCGGACAA
AATTATCGCAAATAtatatcaaaaatcaatttagCGAAACCATTGTATAG
CGGGTCACACAACATGAAGTTCACCCTTGCCGGGGTACTCATCCTACTGG
CCATTGCAGTATGCAGGGCAGAAGAAGAAGACACCAAAAAGCGAGAAATC
ACTACCACTACCACGGTCAAACCTCCAAAGACtgtcacgtgtccaaaaca
aggGAAGGATTATTATGTTCAAGTCCGTATCATGGGTCAAGGTGATTACA
AATACGAAATGAGTCAAGTGGAATCACAAGCTTTCCAAGATGTCCGAGAA
AAAGTCTACGATTGTATTCTTCAAACATACGACGACTATGATTATTATCA
AGACACCATCATGCTCGGAATCGAAAACGCAACAGAGGGCTTCACCGTCA
ACCTGGCTGTCCGTTTCACCAAGGAAGGTGACGGACATATGAACCGATTG
ACACAAAAAGTTCAAGCTGGAAAATTATGTGATATGGAAACTGCTCCTAA
ATTCATCGGATGTGCTGAACTTGATCAACAAATGTTATACCCAATGGCAA
ACTGTCCCGCCCCATGCGCTGATATGGGATGTTGGCCGTCATGTGATCAA
TCGTGTTGTACACAACAAACACCAGAACAAACCATTTATTTACCAGTGGC
Tccaccaccacctccaccacccccacctccaccaccaccacctccaccaa
TGACAATGTGCGCTGCTGGTTGCCCAGAGACCTGTGCACCATCATGCTCT
CCACAATGTTGCTTTGTTCAGAAAAGATGGTTCGCTAAAGTGAAAGCTGG
AGCTGCAAATAAAAATGTAAAACCAACAGCCACACGTAACTTGATCCCCA
CCAAGCGTAATAATATTCCTACCGCGGACTAAATCAATAACACTACAAAG
ATTTTAGGAAAATCATACACAACCAAATAACGATCAGTTCTTTTGATCGA
ATGTTGGACTAAAACTTTATTTGTCATCTAAATCGACAAACTATTTTTCC
TGTAGCGGAAAACTTGCTTCTTTTCTGTTGAAGGGGAAGCACCTagctaa
attatatttttagtaatttttatgaaacattaataaaaaataacagCGGT
ATTTTGTATGTGTTTTTGTACAGTATTAAAACAGGTTGGAAGTACATTGA
CCATGGCTTTAAGTACTTCAGTCTTTATTACAAACTATAAGAAAGAGAAA
GACTTCGTATAATAAAATACCGTGAACCAGAAAGCCAGTTTCAGAGGTCT
TACTGCTTTCTTTATGGGAAATGACCGTAAAGGCCTTTGTAATcggcttt
tttgttatttttataagcTTAATGTATCAAATATTAATATAATATTCTTT
TTGTATATTACACCCtcgattttcaacaaaatttacccaaaaaaccATCT
CTGTTGTATTCTTTTCATCACGATTCCAGATAAAATTCTTTTTCGTGTAA
GCAAAGTGCAAAATATACACTGGATTCTGT

Run BLAST on NCBI

protein sequence of TCONS_00018807-protein

>TCONS_00018807-protein ID=TCONS_00018807-protein|Name=TCONS_00018807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MKFTLAGVLILLAIAVCRAEEEDTKKREITTTTTVKPPKTVTCPKQGKDY
YVQVRIMGQGDYKYEMSQVESQAFQDVREKVYDCILQTYDDYDYYQDTIM
LGIENATEGFTVNLAVRFTKEGDGHMNRLTQKVQAGKLCDMETAPKFIGC
AELDQQMLYPMANCPAPCADMGCWPSCDQSCCTQQTPEQTIYLPVAPPPP
PPPPPPPPPPPPMTMCAAGCPETCAPSCSPQCCFVQKRWFAKVKAGAANK
NVKPTATRNLIPTKRNNIPTAD

Run BLAST on NCBI

transcript from alignment at sc0000309:66457..69585+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018807 ID=TCONS_00018807|Name=TCONS_00018807|organism=Clytia hemisphaerica|type=transcript|length=3129bp|location=Sequence derived from alignment at sc0000309:66457..69585+ (Clytia hemisphaerica)
CAAAATTAgtatacaaagaaaaagaaaatttcattttctcacTTGCCGTA
TAACCTAAAAAATTTCGAATGGTTTCTTTCGAAAATCTCGGAGCGGACAA
AATTATCGCAAATAtatatcaaaaatcaatttagCGAAACCATTGTATAG
CGGGTatgattttgaattattttgatGTCATTTTGATGGTGACGAttttg
acactttggtattttAGGTTTTTTGGGGCATGGTGCAAACAGGGGCTTGA
CGATACACTACGTAGAAAGTGGTAGATTATATTGGAGGGGCATACTGAAT
TCTTAGCAGCAGATAGGAGAGCTAACAGTATTTTTTTCTTcgttaatttg
aaattaaattttgatggacTTTTCCGATTGGCTTCCGACAAAGAAAGGGT
CTATGGATTGTCAACGATTTGAATAACATTAGAATTTGCTTTTCCAATTT
GCAGGTCACACAACATGAAGTTCACCCTTGCCGGGGTACTCATCCTACTG
GCCATTGCAGGTAAGATCATCTCTGCTTTAGACATACAATCCGCCAAACT
TATTCATACCTTACTGTACGTAGCATACATTTTTGAAGACTTCAGCTCTG
TCGCAGTGCCTAGGTGGAACCTTTTCCTCAGTGTGACGAAAGTTTGATAT
TCTTTAGATAAACAAGTCAGCGGGATGGTTTTAAAGGGGATTGTTTTGCC
GATTGATTCTAGGGTATTTTCTCACCGTGAAATTTATCTGCGACACATGT
GGGTTTTATGAATCAAACAGCACTACAAGACAACGAAGTTGCTGTTATAG
TGACAACCTGAATTCATACCAATGAATGGGCGTATGATATTCTACTATCA
ACCTTTCTATTTCTCATACAGTATGCAGGGCAGAAGAAGAAGACACCAAA
AAGCGAGAAATCACTACCACTACCACGGTCAAACCTCCAAAGACtgtcac
gtgtccaaaacaaggTAACTCTCTTTCTTTTCATGTGCATAATATAATGA
ACTATAGTTGGTATTGTGGTTACGgtaaattctaattattttaACATAAG
TTTAATGACTGatccaaaaaagaaaatctgtaaaaatttaGTTGCaacct
ttttttttgttttgtaggGAAGGATTATTATGTTCAAGTCCGTATCATGG
GTCAAGGTGATTACAAATACGAAATGAGTCAAGTGGAATCACAAGCTTTC
CAAGATGTCCGAGAAAAAGTCTACGATTGTGTAAGTTATTATCACACCAT
TAGGCCATTAGGAGGTCAAGTCCTCATGGCTTACATACAAGTACAACGAG
CAAAATAAGAAGCTTTTGATTTGTCTGAAATATCAGGTCATATACGGAAA
TGGGTAGTTCTGGCAATCTCATTTTCAAGAATCATCAACCTCCAACCATC
ACTGATAAAATGACCTTGCACTAGCAATCCTCTCTGTATTTTGTTTTAGA
TTCTTCAAACATACGACGACTATGATTATTATCAAGACACCATCATGCTC
GGAATCGAGTAAGCTCCcttcttttttcttaatttaCTACATGAAAGAGT
AATACCATGAGTCACTTCGAGCAATTCAAGGTAAAAAGTCAAGGTCAAAA
TTAAAGGCTTTTTATGATTCAAGAATATAAAGAACTTCATACATAAATAA
AATAAGTTTACCTTTCTTGATTCATCAACTCATTTGTCTTGCACATGCCT
TTGTCCTGTGTTTTACGAACTTCCCACCTATAAACCTACAGAGAGaatga
aacaacaaaataacaatttttcccATAGAAACGCAACAGAGGGCTTCACC
GTCAACCTGGCTGTCCGTTTCACCAAGGAAGGTGACGGACATATGAACCG
ATTGACACAAAAAGTTCAAGCTGGAAAATTATGTGATATGGAAACTGCTC
CTAAATTCATCGGATGTGGTAAGTGACCAGGAGTCCGAACTTATTCacta
gattttttttaaaggaacGAGACTTACCGTGTATCAAATAATCGACCAAA
GAGTCGATTAATTGCTTGCATTGTCCAATTTAATTCTCTACTTTATGACT
TTTGATCAGCATGAGGGTGACTGGGCGGTGTCTTCTTCGAATCAACCATA
TTTCGAGCCttaaaaacaagaaagaaaacaTCTGAAtgcaaatcttcatt
ttttcatttccagCTGAACTTGATCAACAAATGTTATACCCAATGGCAAA
CTGTCCCGCCCCATGCGCTGATATGGGATGTTGGCCGTCATGTGATCAAT
CGTGTTGTACACAACAAACACCAGAACAAACCATTTATTTACCAGTGGCT
ccaccaccacctccaccacccccacctccaccaccaccacctccaccaaT
GACAATGTGCGCTGCTGGTTGCCCAGAGACCTGTGCACCATCATGCTCTC
CACAATGTTGCTTTGTTCAGAAAAGATGGTTCGCTAAAGTGAAAGCTGGA
GCTGCAAATAAAAATGTAAAACCAACAGCCACACGTAACTTGATCCCCAC
CAAGCGTAATAATATTCCTACCGCGGACTAAATCAATAACACTACAAAGA
TTTTAGGAAAATCATACACAACCAAATAACGATCAGTTCTTTTGATCGAA
TGTTGGACTAAAACTTTATTTGTCATCTAAATCGACAAACTATTTTTCCT
GTAGCGGAAAACTTGCTTCTTTTCTGTTGAAGGGGAAGCACCTagctaaa
ttatatttttagtaatttttatgaaacattaataaaaaataacagCGGTA
TTTTGTATGTGTTTTTGTACAGTATTAAAACAGGTTGGAAGTACATTGAC
CATGGCTTTAAGTACTTCAGTCTTTATTACAAACTATAAGAAAGAGAAAG
ACTTCGTATAATAAAATACCGTGAACCAGAAAGCCAGTTTCAGAGGTCTT
ACTGCTTTCTTTATGGGAAATGACCGTAAAGGCCTTTGTAATcggctttt
ttgttatttttataagcTTAATGTATCAAATATTAATATAATATTCTTTT
TGTATATTACACCCtcgattttcaacaaaatttacccaaaaaaccATCTC
TGTTGTATTCTTTTCATCACGATTCCAGATAAAATTCTTTTTCGTGTAAG
CAAAGTGCAAAATATACACTGGATTCTGT

Coding sequence (CDS) from alignment at sc0000309:66457..69585+

>TCONS_00018807 ID=TCONS_00018807|Name=TCONS_00018807|organism=Clytia hemisphaerica|type=CDS|length=4914bp|location=Sequence derived from alignment at sc0000309:66457..69585+ (Clytia hemisphaerica)
ATGAAGTTCACCCTTGCCGGGGTACTCATCCTACTGGCCATTGCAGTATG
CAGGGCAGAAGAAGAAGACACCAAAAAGCGAGAAATCACTACCACTACCA
CGGTCAAACCTCCAAAGACtgtcacgtgtccaaaacaaggGAAGGATTAT
TATGTTCAAGTCCGTATCATGGGTCAAGGTGATTACAAATACGAAATGAG
TCAAGTGGAATCACAAGCTTTCCAAGATGTCCGAGAAAAAGTCTACGATT
GTATTCTTCAAACATACGACGACTATGATTATTATCAAGACACCATCATG
CTCGGAATCGAAAACGCAACAGAGGGCTTCACCGTCAACCTGGCTGTCCG
TTTCACCAAGGAAGGTGACGGACATATGAACCGATTGACACAAAAAGTTC
AAGCTGGAAAATTATGTGATATGGAAACTGCTCCTAAATTCATCGGATGT
GCTGAACTTGATCAACAAATGTTATACCCAATGGCAAACTGTCCCGCCCC
ATGCGCTGATATGGGATGTTGGCCGTCATGTGATCAATCGTGTTGTACAC
AACAAACACCAGAACAAACCATTTATTTACCAGTGGCTccaccaccacct
ccaccacccccacctccaccaccaccacctccaccaaTGACAATGTGCGC
TGCTGGTTGCCCAGAGACCTGTGCACCATCATGCTCTCCACAATGTTGCT
TTGTTCAGAAAAGATGGTTCGCTAAAGTGAAAGCTGGAGCTGCAAATAAA
AATGTAAAACCAACAGCCACACGTAACTTGATCCCCACCAAGCGTAATAA
TATTCCTACCGCGGACTAAATGAAGTTCACCCTTGCCGGGGTACTCATCC
TACTGGCCATTGCAGTATGCAGGGCAGAAGAAGAAGACACCAAAAAGCGA
GAAATCACTACCACTACCACGGTCAAACCTCCAAAGACtgtcacgtgtcc
aaaacaaggGAAGGATTATTATGTTCAAGTCCGTATCATGGGTCAAGGTG
ATTACAAATACGAAATGAGTCAAGTGGAATCACAAGCTTTCCAAGATGTC
CGAGAAAAAGTCTACGATTGTATTCTTCAAACATACGACGACTATGATTA
TTATCAAGACACCATCATGCTCGGAATCGAAAACGCAACAGAGGGCTTCA
CCGTCAACCTGGCTGTCCGTTTCACCAAGGAAGGTGACGGACATATGAAC
CGATTGACACAAAAAGTTCAAGCTGGAAAATTATGTGATATGGAAACTGC
TCCTAAATTCATCGGATGTGCTGAACTTGATCAACAAATGTTATACCCAA
TGGCAAACTGTCCCGCCCCATGCGCTGATATGGGATGTTGGCCGTCATGT
GATCAATCGTGTTGTACACAACAAACACCAGAACAAACCATTTATTTACC
AGTGGCTccaccaccacctccaccacccccacctccaccaccaccacctc
caccaaTGACAATGTGCGCTGCTGGTTGCCCAGAGACCTGTGCACCATCA
TGCTCTCCACAATGTTGCTTTGTTCAGAAAAGATGGTTCGCTAAAGTGAA
AGCTGGAGCTGCAAATAAAAATGTAAAACCAACAGCCACACGTAACTTGA
TCCCCACCAAGCGTAATAATATTCCTACCGCGGACTAAATGAAGTTCACC
CTTGCCGGGGTACTCATCCTACTGGCCATTGCAGTATGCAGGGCAGAAGA
AGAAGACACCAAAAAGCGAGAAATCACTACCACTACCACGGTCAAACCTC
CAAAGACtgtcacgtgtccaaaacaaggGAAGGATTATTATGTTCAAGTC
CGTATCATGGGTCAAGGTGATTACAAATACGAAATGAGTCAAGTGGAATC
ACAAGCTTTCCAAGATGTCCGAGAAAAAGTCTACGATTGTATTCTTCAAA
CATACGACGACTATGATTATTATCAAGACACCATCATGCTCGGAATCGAA
AACGCAACAGAGGGCTTCACCGTCAACCTGGCTGTCCGTTTCACCAAGGA
AGGTGACGGACATATGAACCGATTGACACAAAAAGTTCAAGCTGGAAAAT
TATGTGATATGGAAACTGCTCCTAAATTCATCGGATGTGCTGAACTTGAT
CAACAAATGTTATACCCAATGGCAAACTGTCCCGCCCCATGCGCTGATAT
GGGATGTTGGCCGTCATGTGATCAATCGTGTTGTACACAACAAACACCAG
AACAAACCATTTATTTACCAGTGGCTccaccaccacctccaccaccccca
cctccaccaccaccacctccaccaaTGACAATGTGCGCTGCTGGTTGCCC
AGAGACCTGTGCACCATCATGCTCTCCACAATGTTGCTTTGTTCAGAAAA
GATGGTTCGCTAAAGTGAAAGCTGGAGCTGCAAATAAAAATGTAAAACCA
ACAGCCACACGTAACTTGATCCCCACCAAGCGTAATAATATTCCTACCGC
GGACTAAATGAAGTTCACCCTTGCCGGGGTACTCATCCTACTGGCCATTG
CAGTATGCAGGGCAGAAGAAGAAGACACCAAAAAGCGAGAAATCACTACC
ACTACCACGGTCAAACCTCCAAAGACtgtcacgtgtccaaaacaaggGAA
GGATTATTATGTTCAAGTCCGTATCATGGGTCAAGGTGATTACAAATACG
AAATGAGTCAAGTGGAATCACAAGCTTTCCAAGATGTCCGAGAAAAAGTC
TACGATTGTATTCTTCAAACATACGACGACTATGATTATTATCAAGACAC
CATCATGCTCGGAATCGAAAACGCAACAGAGGGCTTCACCGTCAACCTGG
CTGTCCGTTTCACCAAGGAAGGTGACGGACATATGAACCGATTGACACAA
AAAGTTCAAGCTGGAAAATTATGTGATATGGAAACTGCTCCTAAATTCAT
CGGATGTGCTGAACTTGATCAACAAATGTTATACCCAATGGCAAACTGTC
CCGCCCCATGCGCTGATATGGGATGTTGGCCGTCATGTGATCAATCGTGT
TGTACACAACAAACACCAGAACAAACCATTTATTTACCAGTGGCTccacc
accacctccaccacccccacctccaccaccaccacctccaccaaTGACAA
TGTGCGCTGCTGGTTGCCCAGAGACCTGTGCACCATCATGCTCTCCACAA
TGTTGCTTTGTTCAGAAAAGATGGTTCGCTAAAGTGAAAGCTGGAGCTGC
AAATAAAAATGTAAAACCAACAGCCACACGTAACTTGATCCCCACCAAGC
GTAATAATATTCCTACCGCGGACTAAATGAAGTTCACCCTTGCCGGGGTA
CTCATCCTACTGGCCATTGCAGTATGCAGGGCAGAAGAAGAAGACACCAA
AAAGCGAGAAATCACTACCACTACCACGGTCAAACCTCCAAAGACtgtca
cgtgtccaaaacaaggGAAGGATTATTATGTTCAAGTCCGTATCATGGGT
CAAGGTGATTACAAATACGAAATGAGTCAAGTGGAATCACAAGCTTTCCA
AGATGTCCGAGAAAAAGTCTACGATTGTATTCTTCAAACATACGACGACT
ATGATTATTATCAAGACACCATCATGCTCGGAATCGAAAACGCAACAGAG
GGCTTCACCGTCAACCTGGCTGTCCGTTTCACCAAGGAAGGTGACGGACA
TATGAACCGATTGACACAAAAAGTTCAAGCTGGAAAATTATGTGATATGG
AAACTGCTCCTAAATTCATCGGATGTGCTGAACTTGATCAACAAATGTTA
TACCCAATGGCAAACTGTCCCGCCCCATGCGCTGATATGGGATGTTGGCC
GTCATGTGATCAATCGTGTTGTACACAACAAACACCAGAACAAACCATTT
ATTTACCAGTGGCTccaccaccacctccaccacccccacctccaccacca
ccacctccaccaaTGACAATGTGCGCTGCTGGTTGCCCAGAGACCTGTGC
ACCATCATGCTCTCCACAATGTTGCTTTGTTCAGAAAAGATGGTTCGCTA
AAGTGAAAGCTGGAGCTGCAAATAAAAATGTAAAACCAACAGCCACACGT
AACTTGATCCCCACCAAGCGTAATAATATTCCTACCGCGGACTAAATGAA
GTTCACCCTTGCCGGGGTACTCATCCTACTGGCCATTGCAGTATGCAGGG
CAGAAGAAGAAGACACCAAAAAGCGAGAAATCACTACCACTACCACGGTC
AAACCTCCAAAGACtgtcacgtgtccaaaacaaggGAAGGATTATTATGT
TCAAGTCCGTATCATGGGTCAAGGTGATTACAAATACGAAATGAGTCAAG
TGGAATCACAAGCTTTCCAAGATGTCCGAGAAAAAGTCTACGATTGTATT
CTTCAAACATACGACGACTATGATTATTATCAAGACACCATCATGCTCGG
AATCGAAAACGCAACAGAGGGCTTCACCGTCAACCTGGCTGTCCGTTTCA
CCAAGGAAGGTGACGGACATATGAACCGATTGACACAAAAAGTTCAAGCT
GGAAAATTATGTGATATGGAAACTGCTCCTAAATTCATCGGATGTGCTGA
ACTTGATCAACAAATGTTATACCCAATGGCAAACTGTCCCGCCCCATGCG
CTGATATGGGATGTTGGCCGTCATGTGATCAATCGTGTTGTACACAACAA
ACACCAGAACAAACCATTTATTTACCAGTGGCTccaccaccacctccacc
acccccacctccaccaccaccacctccaccaaTGACAATGTGCGCTGCTG
GTTGCCCAGAGACCTGTGCACCATCATGCTCTCCACAATGTTGCTTTGTT
CAGAAAAGATGGTTCGCTAAAGTGAAAGCTGGAGCTGCAAATAAAAATGT
AAAACCAACAGCCACACGTAACTTGATCCCCACCAAGCGTAATAATATTC
CTACCGCGGACTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010536	XLOC_010536	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00018807-protein	TCONS_00018807-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000309	supercontig	sc0000309:66457..69585 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0517545	0.176641	0.380894	0.401311	6.14186	7.58341	139.398	153.52	48.7152	37.4367	112.131	93.6674	170.054	151.58	108.397	313.47	186.509	185.172	0.467638	0.575705	131.528	142.088	104.529	103.07	124.33	151.627	16.2157	4.20338	0.430826	0.175578

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000082	SEA_dom

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00018807 vs. Swiss-Prot (Human)

BLAST of TCONS_00018807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00018807 (transcript) - C. hemisphaerica