TCONS_00018796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018796
Unique NameTCONS_00018796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1143

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018796 ID=TCONS_00018796|Name=TCONS_00018796|organism=Clytia hemisphaerica|type=transcript|length=1143bp
AGGGGGTGTAGTGTAGGGGTGTAgttctttctttaattttcttttgcttA
AATTGCGTCGAATTTAGTTCTCGTAATGGtgtattttactttttctttta
ttgagaGTTGTTCAGAGGAAAGCtataaaaatgcttttttctcGTTTGTT
TTATAGATTTTAGCTCTGCATTTGGATTGTAAACGTTTTAGGTGGGGTTT
CGAATATTTATTTTCGGGaggatttgatttttgaatgCTTTAAAATTACA
CCATGcttcattttaattttcatttttaggctGCTCAAAGAATTTTGGAG
AAAGCATCAAAGACCCACAAGCAAAGAGTAGAGgAACTGAATGATTATTT
GGGAGGATTATCTGAACATTATGACATCCAGAAAGTCAGTTGGACGAAAT
AACACTCTTCCATTCATCTCACTATTGATATATTGATATATTTCAAGGAT
GACTTTGCTGCTCAACATTTCGCATGGTACAAAATTATTTCTTTGGCATA
AAAAGTGACTCCATGAACTCCtcttgagaaaaaaacaaagtcTGTCTGTT
TCAAAAATGCCTTTAAGTTGAAGATGGGATACAATCTCTTCCAGGATCTT
ACAAAAACTTTCCAAGTTTTTTGACCAGGGCTAACTTAAAAGATAACTAA
CTTTTGAGGTATTATCATATTAAACTTGGCCTAGtgagttttcttttcaa
gttaTTAacttttcaagctaaaattgacttttcaaaaagtgttttAAGCA
ATATGAAAACGGAAGTCAATAGTTTTTTTTCGAGCTACCCGGTATCGTAA
GCTAGCTTCTTATGTAACGACGCTTTCACGGCCACCAGGAGGAGACTAGC
ACATCGAGAACTGAAACCATAGTAGTTGATTGCTACTTTAAAAACTCTTC
TCGTGGATTTGCATGTTTGGCATTTTTGGTGTTTTATAGCAATTAACCAT
CTCATCTATTTCAagattgtaaattaaaattttaaagcaaaaattttcAC
CTCTTAGAACTAAAAATGTAACGTCTTTATTGTCTTCGTTGAAGCATCAT
TAGATTGCGCAATAAAATTTTGTCAGTAGATTTTATCGGTTTATTGTTAT
CTTTTTACACGTTATTTATGAAAGAAAATCGATTAAAACACat
Run BLAST on NCBI

transcript from alignment at sc0000306:350764..354058-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018796 ID=TCONS_00018796|Name=TCONS_00018796|organism=Clytia hemisphaerica|type=transcript|length=3295bp|location=Sequence derived from alignment at sc0000306:350764..354058- (Clytia hemisphaerica)
AGGGGGTGTAGTGTAGGGGTGTAGTTCTTTCTTTAATTTTCTTTTGCTTA
AATTGCGTCGAATTTAGTTCTCGTAATGGTGTATTTTACTTTTTCTTTTA
TTGAGAGTTGTTCAGAGGAAAGCTATAAAAATGCTTTTTTCTCGTTTGTT
TTATAGATTTTAGCTCTGCATTTGGATTGTAAACGTTTTAGGTGGGGTTT
CGAATATTTATTTTCGGGAGGATTTGATTTTTGAATGCTTTAAAATTACA
CCATGCTTCATTTTAATTTTCATTTTTAGGCTGCTCAAAGAATTTTGGAG
AAAGCATCAAAGACCCACAAGCAAAGAGTAGAGGTATAAAATCATTTTCC
ATATTTCTTGACCAGTTTGATTAGCTTCGGTCAGTTTGGTGATAAATTTT
AATGAGAAAAAGCTAAATTGACTTGTGACCAAAGTTACAGTGTTAAATCA
GACTAAAACATTAAAAGTAAATATTGTAAATATTAATATTATAATCACGA
GACCTATAGATCCTATATTTGATTTTCTCTTTATCATTCAAAAATTTGGA
AACAGTTATCTTACTACAGATAAATATTTGAACTGCAATGGTTCATAAGG
TAAAATCACAAAATATATTTCGAACATTCACGTCCATCATCAGTTAAAAA
GTAAGCTACAAGCAAAATGTTCAATTATTTCTAAAAAATTGAAAAAAATC
ATAAAATCACATGGGAGTATAAAACAAGTATTAAAAGAGAAAAGGAAACA
ATTAAGTCATAAAATTGTGCATGTACANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGTG
ACTGCAAGCTCTGTATATTCTGTGGACAATACCAGATACTACATTTCGTT
TGTATCGTTTTGGTGACAACGCGTGGAAGTTCATCATAAGCCCGGTATCT
GTCGGTTTGCAGTACCATGTTGACTCCAGGGAGTTTTCTTTGTGTATGAT
ACATACGTTTAGGAAAGGTAGCTTACCATCCTCTTCAATCTCCAACGTGA
ATTTCAAATTCTTGTGGACTTTCTCATCGTCGTTAACGTCAATCAACTTT
TGATCAATGTGTTGACGTTTAATTGATCTTAGAATATCGTCCATGTAACG
CTCGAAAATTTTCGCGTCATCTTTGATAAATTCTTCGAATTTGGACAACC
ATATATTGGCCAGACAAGGGGCTGGTTGGGAACCCATGGCTAAGCCATCC
ACTTGTTTGTACGGTCCATCATGAGTTAGCAACATAACGTCAGTTGTCGC
AAGTTTGGTTAGTGTGATAAATGTTTCCTTACTGACCATCTTTTGGAAAG
GGCAGCGCCCGTGGGTGGCCAAAAAAGGAACTTTTTCTAGTGTTTTTCCA
CTAAAAAGGCTGTTTTACCAAAATTTTAGGGACTTCAGGAGGGAAAAAGG
ACTGCTTTAATATGATGCAAAACTTTATAGAGTATTTACCATCATTATAT
CATTACATTATATGGCATTTTCTTTTTTGTTGTAGGAACTGAATGATTAT
TTGGGAGGATTATCTGAACATTATGACATCCAGAAAGTCAGTTGGACGAA
ATAACACTCTTCCATTCATCTCACTATTGATATATTGATATATTTCAAGG
ATGACTTTGCTGCTCAACATTTCGCATGGTACAAAATTATTTCTTTGGCA
TAAAAAGTGACTCCATGAACTCCTCTTGAGAAAAAAACAAAGTCTGTCTG
TTTCAAAAATGCCTTTAAGTTGAAGATGGGATACAATCTCTTCCAGGATC
TTACAAAAACTTTCCAAGTTTTTTGACCAGGGCTAACTTAAAAGATAACT
AACTTTTGAGGTATTATCATATTAAACTTGGCCTAGTGAGTTTTCTTTTC
AAGTTATTAACTTTTCAAGCTAAAATTGACTTTTCAAAAAGTGTTTTAAG
CAATATGAAAACGGAAGTCAATAGTTTTTTTTCGAGCTACCCGGTATCGT
AAGCTAGCTTCTTATGTAACGACGCTTTCACGGCCACCAGGAGGAGACTA
GCACATCGAGAACTGAAACCATAGTAGTTGATTGCTACTTTAAAAACTCT
TCTCGTGGATTTGCATGTTTGGCATTTTTGGTGTTTTATAGCAATTAACC
ATCTCATCTATTTCAAGATTGTAAATTAAAATTTTAAAGCAAAAATTTTC
ACCTCTTAGAACTAAAAATGTAACGTCTTTATTGTCTTCGTTGAAGCATC
ATTAGATTGCGCAATAAAATTTTGTCAGTAGATTTTATCGGTTTATTGTT
ATCTTTTTACACGTTATTTATGAAAGAAAATCGATTAAAACACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010525XLOC_010525Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018796-exon-sc0000306-1575043694:353726..354058TCONS_00018796-exon-sc0000306-1575043694:353726..354058Clytia hemisphaericaexon
TCONS_00018796-exon-sc0000306-1575043694:350764..351573TCONS_00018796-exon-sc0000306-1575043694:350764..351573Clytia hemisphaericaexon
TCONS_00018796-exon-sc0000306-1510915933:353726..354058TCONS_00018796-exon-sc0000306-1510915933:353726..354058Clytia hemisphaericaexon
TCONS_00018796-exon-sc0000306-1510915933:350764..351573TCONS_00018796-exon-sc0000306-1510915933:350764..351573Clytia hemisphaericaexon
TCONS_00018796-exon-sc0000306-1491911889:353726..354058TCONS_00018796-exon-sc0000306-1491911889:353726..354058Clytia hemisphaericaexon
TCONS_00018796-exon-sc0000306-1491911889:350764..351573TCONS_00018796-exon-sc0000306-1491911889:350764..351573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000306supercontigsc0000306:350764..354058 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.63502	4.63459	23.041	25.7727	64.955	57.604	54.7558	68.9597	41.3089	36.511	29.6422	37.8986	17.1175	14.9438	5.9673	5.95057	7.96539	8.49153	3.05588	2.39878	6.25732	5.43569	5.96351	5.40475	19.4022	38.201	7.75743	5.64818	4.59978	4.18888
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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