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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018795 ID=TCONS_00018795|Name=TCONS_00018795|organism=Clytia hemisphaerica|type=transcript|length=3844bpRun BLAST on NCBI protein sequence of TCONS_00018795-protein >TCONS_00018795-protein ID=TCONS_00018795-protein|Name=TCONS_00018795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=782bp MTLLLNISHEDSKSQTGLVTEDPEVNAESKNMERRKLIYAVVGCVVIAILRun BLAST on NCBI transcript from alignment at sc0000306:322188..353875- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018795 ID=TCONS_00018795|Name=TCONS_00018795|organism=Clytia hemisphaerica|type=transcript|length=31688bp|location=Sequence derived from alignment at sc0000306:322188..353875- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000306:322188..353875- >TCONS_00018795 ID=TCONS_00018795|Name=TCONS_00018795|organism=Clytia hemisphaerica|type=CDS|length=37584bp|location=Sequence derived from alignment at sc0000306:322188..353875- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018795 vs. Swiss-Prot (Human)
Match: NALD2 (N-acetylated-alpha-linked acidic dipeptidase 2 OS=Homo sapiens GN=NAALAD2 PE=1 SV=1) HSP 1 Score: 421.009 bits (1081), Expect = 4.543e-130 Identity = 268/758 (35.36%), Postives = 409/758 (53.96%), Query Frame = 2
Query: 395 CVVIAILSFVIGYFSRSTGCDSSDNKNGGNSGAQGMTDKELDEL------HQSI----VDIMKTDELKANMRYFAAKPHVASTPRTFANTQEMYDRFKSYGFEPS-FHNYTTILAYSKKDDPNRVYIKDENNDDVFKSRDSEKIYTDAEEEDDPTALPPFLAYSMKGAARGKNLVYANFGRDQDYQKL-IELKINVTDCIVLTKYGMGGRGGKVRMAEKYKAAGILIYGDPRQYAPVLSEKFPDGRWLSDDGVQRGSIIGGEGVPEGDPMSGGYPAKSWAYRPENVSEVKGISKIPAQPIAASDAEKLLEYLGGAEVTDDEWVGYLNTTYRYGPL---ENSSLTVDLVVNNDNKITDIRNVCGFMKGKYEPDRYVMLGNHVDAWVNGAVDATSGTTVMMEIARALGEKHKTGWRPRRSIMLCGWDGEESGLIGSVEHVEEYYSQLKDKAIAYINIDSAVAGNNSLLTAASPLLHDLMFDVHKKVNDP---YRDETVFDRCMIHYKDTDYNKTHKIYSLGAGSDYFAFYKFTGIPSIDMSYRQSDLDQIYNTSYYPQYHTFHDTIFWMEHFVDKDYKVHLTVARVGLLYLLKLADNPLIPFTMQRYVDALNRGVTSLKSTMKK-DGGLGEAKISELVKPLDDGVKSFSKAVASMTKYIASVKKDKEKLNNPMFVRMLNDKLMQLEKGFAYPGGVPGRPQLKHYIMTSSSNSKYSDCPLPALSDLIPALKNG-----EFKEFKIQMSITTSLVRAVADSL 2596
C+ A+ SF++G+ G K L E HQSI V MK + +K+ +R F PH+A T + F +++ ++K +G + + +Y +L+Y + + N + I DE+ ++FK+ E E+ +PP+ A+S +G G +LVY N+ R +D+ KL E+ IN T IV+ +YG RG KV+ A A GI++Y DP Y + +P G L QRG+++ G GDP++ GYPAK + +R +V E GI +IP PI +DAE LL YLGG D W G LN +Y GP +S V + V N NKIT I NV G ++G EPDRYV+LG H D+WV GA+D TSG V+ EIAR+ G+ GWRPRR+I+ WD EE GL+GS E EE L++++IAYIN DS++ GN +L +PLL+ L++ + K++ P + +++++ + + +I LG+GSD+ A+++ GI S Y ++ Y++ YP YHT ++T +E F D +K L+VA++ + +L D+ +IPF +Q Y +AL S+ + KK D L + +S L VK+FS+A + K + V LNNP+ VRM+ND+LM LE+ F P G+PG+ +H I SS++KY+ P + D I ++N +KE K +SI ++A A +L
Sbjct: 13 CLAAALASFLMGFMV-------------------GWFIKPLKETTTSVRYHQSIRWKLVSEMKAENIKSFLRSFTKLPHLAGTEQNFLLAKKIQTQWKKFGLDSAKLVHYDVLLSYPNETNANYISIVDEHETEIFKTSYLEP--PPDGYENVTNIVPPYNAFSAQGMPEG-DLVYVNYARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGA--GDPLTPGYPAKEYTFR-LDVEEGVGIPRIPVHPIGYNDAEILLRYLGGIAPPDKSWKGALNVSYSIGPGFTGSDSFRKVRMHVYNINKITRIYNVVGTIRGSVEPDRYVILGGHRDSWVFGAIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWDAEEFGLLGSTEWAEENVKILQERSIAYINSDSSIEGNYTLRVDCTPLLYQLVYKLTKEIPSPDDGFESKSLYESWLEKDPSPENKNLPRINKLGSGSDFEAYFQRLGIASGRARYTKNKKTDKYSS--YPVYHTIYETFELVEKFYDPTFKKQLSVAQLRGALVYELVDSKIIPFNIQDYAEALKNYAASIYNLSKKHDQQLTDHGVS--FDSLFSAVKNFSEAASDFHKRLIQV-----DLNNPIAVRMMNDQLMLLERAFIDPLGLPGKLFYRHIIFAPSSHNKYAGESFPGIYDAIFDIENKANSRLAWKEVKKHISIAAFTIQAAAGTL 736 The following BLAST results are available for this feature:
BLAST of TCONS_00018795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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