TCONS_00018790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018790
Unique NameTCONS_00018790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018790 ID=TCONS_00018790|Name=TCONS_00018790|organism=Clytia hemisphaerica|type=transcript|length=2932bp
AGAAAGAACAATAACGTAAATGAATAAGTACGATTTGGAGCAACGTGTGC
TCAGATACCTTAAGAAAAATTATGGAGATCCGGTGCTCATTGGAAAGATT
GACGTGGAAGAGGTTACTAAATTTATCATCGATCAGTCGACCGCTTTGTG
TAATCTAAAGAAGCACGAGGCGTTAAAATCAGGTGTGGAAAGAAGCGACC
AGGAGAAAGCAATCCTCTATAAATTCGTCAAGATTCGTGtcgaaaaaagc
aaagaatctgctgaaaaggattttcaactTGAAAGTGACCTCATTGAGAT
TGCTAATAACACATTCGAATTACTAATGGATCCATCTAATGTAATTTCTG
CACGTGTAAAATCTGACACTATTCTACACTTTGTCACCCGCCTAAAGTAT
GACACTATTTTCATGGATGAACTGTTACATCTAGGAGCTGATATCAATGC
AAAAAATACGTACGGAAAAACACCCTTTTCATTAGCTGTTTCAAACTACG
ATTATGGGGCAATGGAAATGATGCTGAATAAAGCAAACAAATCCTCCGTT
GACATACAAAAGACTTTATTTCAAGCTGTTTGTTTTATCCCAGTACTTTT
CTCGCTGAAACAAATTGCGGAACTGTTCGAATTCTTTAAAAGATATGGCT
TTGATATGAATCTCAGAAACGAATCACAAATATCACTGGCAGAGCACTAC
ATATCTTCTTCAAAGGAACTTTCACTAAAAGTGGTCAAGTATCTGGTTAA
CAATTGCCACGCGAGCTGTTTAAGGAAAAGAGATGGGTCATCTCTGATTC
AAACATTAATCAAAAAGCAGTCATTTTTCCCAGTGGATCCTTCAGTTTTG
GAGTACCTCTGTAAATTGGACGAGCAAGACATCAACGAGAAAGACGCTGA
GCAAATGACCCCTCTGATAAATGCAATCACCAAGTCTTCAGTTGACCTGT
GTAAAGTGCTCCTGGAAGTGGGAGTAGATATTAATATTGTTTACAATCAA
GGTATGACATGTCTACATTACGCGGTGTCTGTTTCTCCCAACAGACAGTT
TTCCGGGCATGAAAAAATTGTTCATTTATTACTTAAAAAAGGTGCTTCGG
TCGATGCTGTGGATTGCTACGGAGATCCTCCGATTGTGTATGCAGCAGCA
ACGGGAAATATAAAGATTCTTAAAATATTGTACGAAAAAAACAAGCAGTT
GGGCGGGGAAGTGAATGATCAGCTTTTTGAGCGAATGATTTCACTGGCAG
AACTTCATGGACACGATCAGGTAATTAGAGAGGTTGAAAAGTTACGTGAT
CCTGAATTCGGGAAACCAAACAAGCGCTATTGCAAATGTGTTTCTGTGCT
TTACCATTGGCCAACTTCGTCTGAGCCCAACCGGGGGTTAAGCGTGAATG
AACTACAACGACTTGTTGCACAAACGAAGAAAACAATCTCATTGGCGGAT
GACACTTATAAAAATTGGTTGAAACATAAAGTCGAAGATACGATATTTAA
AGAGAAAAACGGACCGAGCCCTCTTGTCTTTCACAAATTCTTTGTCCGAG
ATAAAAGactaaaaatggaaaatcttGAGATACAAGAACAGTTGACAGAA
CTTTTAAATCGTATCGCAGAGTTTGGAAAATTGATTGACCCGAATTTGTC
ATTTAAACCAATTCTTTCAGGAAGCAATACCGAGGGAACGAAAATTGGAC
TTCTCGATGAAATAGACTTTCTCTGTCACATAGAATTTCCTGTCAAGTTA
GAATATCAGATTACTACAGACATtaaaacaccaaatttgaaGAGAATTGA
AATCACAAATGTCGAAGAGATAGCTGACGGTATGAACGAACTGTTTTACA
ATGACAATAATGGTAAATCATATCTTTCCGCCAAGATTGCCCATCGACTT
TGGAAAGTCTTTGTCTCGTCTTTCAAGCATAATAAAATTTGGGAAGGATT
AAATTTGTCAATGCCATGGTGGGAAAAGAAGGATTTCTTTAAGCGAGACA
TACTCAGGTTCATTTCGACAACCAACTTTATTTGGAacagccaaaatgtt
aagatgCTAACAATCTCAATCGATCTTGTTCCTACACTTTTGCTTAaaga
cgacgaaaaaaaaattcaagaaaatccaCCATCCGAAACTTTTCGAACTC
TTAAGAGCTACTTCGAtatcagtgaaaatgaaagtcttCTTGTTTCGAAA
CTAGCCCATTCCAGGTCCATAGATGACGTAGTAGTGTTATGGAGGAAGTC
TTTTTCGTATATCGAATCAACCatcttccaacaacttccaCAGTGCGTCC
GAGATGGATACAAGCTTACAAAATTCATCCGTCATCAAAAGTTATGCCCT
GCTTATTCTAAATCTTATTCACgtaatattgacaaaatgattACGAgtta
catgttaaaaacatgTTTGTTTCATGAAATTGCAATGGATATCAAAGCAA
GCTCTGGCAAACCGCAATTTGATATTCATACTCCTGCTGAATGGGGTACA
AAAATTTTAAGTAGGCTTGAAAAGTTTATGAAAAGATCAAGCAATGTACA
AGCTTATTATGACGAGAAAACAGTTTTACATGTTCCTTTGGACCTTGTAT
TTGAAGGAAAGACTAGTAAAAGGGTTATTGCATTTTGCGAAATTGGAAAA
GAATGGTTGCGACACCCATGGGATTTTATCGATTAAACgatataatttta
gattttccaatacagggtgtccggaaaaaaagtatcgagtcgtaccactt
ctatatagaaagaaagttcttgtctatgtttcactaaatttgcaatagtt
ctatttatactgagatgggtaatttgtctgagacgagcaatttagaaaat
gagcattatggaggagtgtactttccattcatgtttcaacAAATAGGATC
TCCTCTGcagatcacattttacaaactactcg
Run BLAST on NCBI

protein sequence of TCONS_00018790-protein

>TCONS_00018790-protein ID=TCONS_00018790-protein|Name=TCONS_00018790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=888bp
MNKYDLEQRVLRYLKKNYGDPVLIGKIDVEEVTKFIIDQSTALCNLKKHE
ALKSGVERSDQEKAILYKFVKIRVEKSKESAEKDFQLESDLIEIANNTFE
LLMDPSNVISARVKSDTILHFVTRLKYDTIFMDELLHLGADINAKNTYGK
TPFSLAVSNYDYGAMEMMLNKANKSSVDIQKTLFQAVCFIPVLFSLKQIA
ELFEFFKRYGFDMNLRNESQISLAEHYISSSKELSLKVVKYLVNNCHASC
LRKRDGSSLIQTLIKKQSFFPVDPSVLEYLCKLDEQDINEKDAEQMTPLI
NAITKSSVDLCKVLLEVGVDINIVYNQGMTCLHYAVSVSPNRQFSGHEKI
VHLLLKKGASVDAVDCYGDPPIVYAAATGNIKILKILYEKNKQLGGEVND
QLFERMISLAELHGHDQVIREVEKLRDPEFGKPNKRYCKCVSVLYHWPTS
SEPNRGLSVNELQRLVAQTKKTISLADDTYKNWLKHKVEDTIFKEKNGPS
PLVFHKFFVRDKRLKMENLEIQEQLTELLNRIAEFGKLIDPNLSFKPILS
GSNTEGTKIGLLDEIDFLCHIEFPVKLEYQITTDIKTPNLKRIEITNVEE
IADGMNELFYNDNNGKSYLSAKIAHRLWKVFVSSFKHNKIWEGLNLSMPW
WEKKDFFKRDILRFISTTNFIWNSQNVKMLTISIDLVPTLLLKDDEKKIQ
ENPPSETFRTLKSYFDISENESLLVSKLAHSRSIDDVVVLWRKSFSYIES
TIFQQLPQCVRDGYKLTKFIRHQKLCPAYSKSYSRNIDKMITSYMLKTCL
FHEIAMDIKASSGKPQFDIHTPAEWGTKILSRLEKFMKRSSNVQAYYDEK
TVLHVPLDLVFEGKTSKRVIAFCEIGKEWLRHPWDFID
Run BLAST on NCBI

transcript from alignment at sc0000306:302722..307356+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018790 ID=TCONS_00018790|Name=TCONS_00018790|organism=Clytia hemisphaerica|type=transcript|length=4635bp|location=Sequence derived from alignment at sc0000306:302722..307356+ (Clytia hemisphaerica)
AGAAAGAACAATAACGTAAATGAATAAGTACGATTTGGAGCAACGTGTGC TCAGATACCTTAAGAAAAATTATGGAGATCCGGTGCTCATTGGAAAGATT GACGTGGAAGAGGTTACTAAATTTATCATCGATCAGTCGACCGCTTTGTG TAATCTAAAGAAGCACGAGGCGTTAAAATCAGGTAAACTGTAGTTGATTG GTTGCTGTTGTGTTAGTCTGAAGTTTTGTATACAAATTTAAAGATATACA AAATATGATTCTTTTAAggttcatttttcatcaaagagAAGCATTTGAAA ACGGAAACAAGAAAAGTGTTACNTTCATTTTTCATGAAAGAGAAgcattt gaaaactgaaacaaGAAAAGTGTTAAACTTTGATGAAAtacatcccagct ggcacacaacgttgttttaacgtttatctaacgttcacaacgtccattta acgttagatgaacgttgaaacaacgttgtgtgccagctgggatgctTTTT Ctttctcgggtaagttatggcatgtcttaaaatgaccataatttttagat cgcattagccgacagaaaactaccaaacaaatgactgaacatgaagggta ctatgatgtaggttctaacctgatgtgtaacctaattgttttttcgttga ttttcgcgaaaaaccgcaaaaactgattattacgtaataatcgatgacgt cataaaaactaaaaattgaatttctcaagaatggtttatccaattgtctt caaactttcaccaaagatgtatcctACTAAAGTTgatcatttgaaagaat tttttttcgaaattctgattacgtcagcaagaaataggatttttttgttt tttaccaATTCctgctgatgtcatcaaaatttcgaaaaacttttttttca aatgatcgactttagtaaaGATACAtgtttggtgaaagtttgaagacaat tggattaaccattcttgagaaattcgatctttagttttgatgacgtcatc gattattacgtaataatcagtttttgcggtttttcgcgaaaatcagcgaa aaaacaattaggttacacatcaggttagaaactacatcatagtatccttc atgttcagtcatttgtttggtcattttctgtcgactaatgcgatctaaaa attatggtaattttcagtttttgagacatgccataacttacccgagttta taagcataacgtttataagcatatgcagactcagtttttggtacctaaac aatccggctctattgtttaagaacaatagaatgctaagcataatgcgagc ctgatatagggacagacacttgcttgtaaacaaaaaaacatgtagttgct acaatcatggttgaaatatattgaaaattccggttattttaacgtttttc aagatttaaagttcatGCGAGAAAGTCGAGCAAATGCCCCCCCTCCCCAG CAGAAGTTTTTCAAAGGGGCACCGAAATACAAAAggaggggggcgtacgg ggtttgcgatttccgaaatactgAATGATAtagccaaaatttccgaaatt ccgtaaaaaaaaattccgctACTgattttttgagtgtttttcctcgtttt gactaatttttcaccaaatttgatttttcatgtatgaattccgaaaaaag ggggataaaaactttataataccgaaatttcgaagcaaaaattcatatgg atttccgatactgaaacaatttcagaattccgaaataccgtaagaatttt gcccgatttccgaaatccCAAAGAAAAAAGGATCGATTTatgcaattccg aaataccgtacgcccccatCTACAAAGGGTTAGTAGAGacttttcaaaag aattaaTTGTGTTTTGTTTCAAACCTTGTTTATAGGTGTGGAAAGAAGCG ACCAGGAGAAAGCAATCCTCTATAAATTCGTCAAGATTCGTGtcgaaaaa agcaaagaatctgctgaaaaggattttcaactTGAAAGTGACCTCATTGA GATTGCTAATAACACATTCGAATTACTAATGGATCCATCTAATGTAATTT CTGCACGTGTAAAATCTGACACTATTCTACACTTTGTCACCCGCCTAAAG TATGACACTATTTTCATGGATGAACTGTTACATCTAGGAGCTGATATCAA TGCAAAAAATACGTACGGAAAAACACCCTTTTCATTAGCTGTTTCAAACT ACGATTATGGGGCAATGGAAATGATGCTGAATAAAGCAAACAAATCCTCC GTTGACATACAAAAGACTTTATTTCAAGCTGTTTGTTTTATCCCAGTACT TTTCTCGCTGAAACAAATTGCGGAACTGTTCGAATTCTTTAAAAGATATG GCTTTGATATGAATCTCAGAAACGAATCACAAATATCACTGGCAGAGCAC TACATATCTTCTTCAAAGGAACTTTCACTAAAAGTGGTCAAGTATCTGGT TAACAATTGCCACGCGAGCTGTTTAAGGAAAAGAGATGGGTCATCTCTGA TTCAAACATTAATCAAAAAGCAGTCATTTTTCCCAGTGGATCCTTCAGTT TTGGAGTACCTCTGTAAATTGGACGAGCAAGACATCAACGAGAAAGACGC TGAGCAAATGACCCCTCTGATAAATGCAATCACCAAGTCTTCAGTTGACC TGTGTAAAGTGCTCCTGGAAGTGGGAGTAGATATTAATATTGTTTACAAT CAAGGTATGACATGTCTACATTACGCGGTGTCTGTTTCTCCCAACAGACA GTTTTCCGGGCATGAAAAAATTGTTCATTTATTACTTAAAAAAGGTGCTT CGGTCGATGCTGTGGATTGCTACGGAGATCCTCCGATTGTGTATGCAGCA GCAACGGGAAATATAAAGATTCTTAAAATATTGTACGAAAAAAACAAGCA GTTGGGCGGGGAAGTGAATGATCAGCTTTTTGAGCGAATGATTTCACTGG CAGAACTTCATGGACACGATCAGGTAATTAGAGAGGTTGAAAAGTTACGT GATCCTGAATTCGGGAAACCAAACAAGCGCTATTGCAAATGTGTTTCTGT GCTTTACCATTGGCCAACTTCGTCTGAGCCCAACCGGGGGTTAAGCGTGA ATGAACTACAACGACTTGTTGCACAAACGAAGAAAACAATCTCATTGGCG GATGACACTTATAAAAATTGGTTGAAACATAAAGTCGAAGATACGATATT TAAAGAGAAAAACGGACCGAGCCCTCTTGTCTTTCACAAATTCTTTGTCC GAGATAAAAGactaaaaatggaaaatcttGAGATACAAGAACAGTTGACA GAACTTTTAAATCGTATCGCAGAGTTTGGAAAATTGATTGACCCGAATTT GTCATTTAAACCAATTCTTTCAGGAAGCAATACCGAGGGAACGAAAATTG GACTTCTCGATGAAATAGACTTTCTCTGTCACATAGAATTTCCTGTCAAG TTAGAATATCAGATTACTACAGACATtaaaacaccaaatttgaaGAGAAT TGAAATCACAAATGTCGAAGAGATAGCTGACGGTATGAACGAACTGTTTT ACAATGACAATAATGGTAAATCATATCTTTCCGCCAAGATTGCCCATCGA CTTTGGAAAGTCTTTGTCTCGTCTTTCAAGCATAATAAAATTTGGGAAGG ATTAAATTTGTCAATGCCATGGTGGGAAAAGAAGGATTTCTTTAAGCGAG ACATACTCAGGTTCATTTCGACAACCAACTTTATTTGGAacagccaaaat gttaagatgCTAACAATCTCAATCGATCTTGTTCCTACACTTTTGCTTAa agacgacgaaaaaaaaattcaagaaaatccaCCATCCGAAACTTTTCGAA CTCTTAAGAGCTACTTCGAtatcagtgaaaatgaaagtcttCTTGTTTCG AAACTAGCCCATTCCAGGTCCATAGATGACGTAGTAGTGTTATGGAGGAA GTCTTTTTCGTATATCGAATCAACCatcttccaacaacttccaCAGTGCG TCCGAGATGGATACAAGCTTACAAAATTCATCCGTCATCAAAAGTTATGC CCTGCTTATTCTAAATCTTATTCACgtaatattgacaaaatgattACGAg ttacatgttaaaaacatgTTTGTTTCATGAAATTGCAATGGATATCAAAG CAAGCTCTGGCAAACCGCAATTTGATATTCATACTCCTGCTGAATGGGGT ACAAAAATTTTAAGTAGGCTTGAAAAGTTTATGAAAAGATCAAGCAATGT ACAAGCTTATTATGACGAGAAAACAGTTTTACATGTTCCTTTGGACCTTG TATTTGAAGGAAAGACTAGTAAAAGGGTTATTGCATTTTGCGAAATTGGA AAAGAATGGTTGCGACACCCATGGGATTTTATCGATTAAACgatataatt ttagattttccaatacagggtgtccggaaaaaaagtatcgagtcgtacca cttctatatagaaagaaagttcttgtctatgtttcactaaatttgcaata gttctatttatactgagatgggtaatttgtctgagacgagcaatttagaa aatgagcattatggaggagtgtactttccattcatgtttcaacAAATAGG ATCTCCTCTGcagatcacattttacaaactactcg

Coding sequence (CDS) from alignment at sc0000306:302722..307356+

>TCONS_00018790 ID=TCONS_00018790|Name=TCONS_00018790|organism=Clytia hemisphaerica|type=CDS|length=5334bp|location=Sequence derived from alignment at sc0000306:302722..307356+ (Clytia hemisphaerica)
ATGAATAAGTACGATTTGGAGCAACGTGTGCTCAGATACCTTAAGAAAAA
TTATGGAGATCCGGTGCTCATTGGAAAGATTGACGTGGAAGAGGTTACTA
AATTTATCATCGATCAGTCGACCGCTTTGTGTAATCTAAAGAAGCACGAG
GCGTTAAAATCAGGTGTGGAAAGAAGCGACCAGGAGAAAGCAATCCTCTA
TAAATTCGTCAAGATTCGTGtcgaaaaaagcaaagaatctgctgaaaagg
attttcaactTGAAAGTGACCTCATTGAGATTGCTAATAACACATTCGAA
TTACTAATGGATCCATCTAATGTAATTTCTGCACGTGTAAAATCTGACAC
TATTCTACACTTTGTCACCCGCCTAAAGTATGACACTATTTTCATGGATG
AACTGTTACATCTAGGAGCTGATATCAATGCAAAAAATACGTACGGAAAA
ACACCCTTTTCATTAGCTGTTTCAAACTACGATTATGGGGCAATGGAAAT
GATGCTGAATAAAGCAAACAAATCCTCCGTTGACATACAAAAGACTTTAT
TTCAAGCTGTTTGTTTTATCCCAGTACTTTTCTCGCTGAAACAAATTGCG
GAACTGTTCGAATTCTTTAAAAGATATGGCTTTGATATGAATCTCAGAAA
CGAATCACAAATATCACTGGCAGAGCACTACATATCTTCTTCAAAGGAAC
TTTCACTAAAAGTGGTCAAGTATCTGGTTAACAATTGCCACGCGAGCTGT
TTAAGGAAAAGAGATGGGTCATCTCTGATTCAAACATTAATCAAAAAGCA
GTCATTTTTCCCAGTGGATCCTTCAGTTTTGGAGTACCTCTGTAAATTGG
ACGAGCAAGACATCAACGAGAAAGACGCTGAGCAAATGACCCCTCTGATA
AATGCAATCACCAAGTCTTCAGTTGACCTGTGTAAAGTGCTCCTGGAAGT
GGGAGTAGATATTAATATTGTTTACAATCAAGGTATGACATGTCTACATT
ACGCGGTGTCTGTTTCTCCCAACAGACAGTTTTCCGGGCATGAAAAAATT
GTTCATTTATTACTTAAAAAAGGTGCTTCGGTCGATGCTGTGGATTGCTA
CGGAGATCCTCCGATTGTGTATGCAGCAGCAACGGGAAATATAAAGATTC
TTAAAATATTGTACGAAAAAAACAAGCAGTTGGGCGGGGAAGTGAATGAT
CAGCTTTTTGAGCGAATGATTTCACTGGCAGAACTTCATGGACACGATCA
GGTAATTAGAGAGGTTGAAAAGTTACGTGATCCTGAATTCGGGAAACCAA
ACAAGCGCTATTGCAAATGTGTTTCTGTGCTTTACCATTGGCCAACTTCG
TCTGAGCCCAACCGGGGGTTAAGCGTGAATGAACTACAACGACTTGTTGC
ACAAACGAAGAAAACAATCTCATTGGCGGATGACACTTATAAAAATTGGT
TGAAACATAAAGTCGAAGATACGATATTTAAAGAGAAAAACGGACCGAGC
CCTCTTGTCTTTCACAAATTCTTTGTCCGAGATAAAAGactaaaaatgga
aaatcttGAGATACAAGAACAGTTGACAGAACTTTTAAATCGTATCGCAG
AGTTTGGAAAATTGATTGACCCGAATTTGTCATTTAAACCAATTCTTTCA
GGAAGCAATACCGAGGGAACGAAAATTGGACTTCTCGATGAAATAGACTT
TCTCTGTCACATAGAATTTCCTGTCAAGTTAGAATATCAGATTACTACAG
ACATtaaaacaccaaatttgaaGAGAATTGAAATCACAAATGTCGAAGAG
ATAGCTGACGGTATGAACGAACTGTTTTACAATGACAATAATGGTAAATC
ATATCTTTCCGCCAAGATTGCCCATCGACTTTGGAAAGTCTTTGTCTCGT
CTTTCAAGCATAATAAAATTTGGGAAGGATTAAATTTGTCAATGCCATGG
TGGGAAAAGAAGGATTTCTTTAAGCGAGACATACTCAGGTTCATTTCGAC
AACCAACTTTATTTGGAacagccaaaatgttaagatgCTAACAATCTCAA
TCGATCTTGTTCCTACACTTTTGCTTAaagacgacgaaaaaaaaattcaa
gaaaatccaCCATCCGAAACTTTTCGAACTCTTAAGAGCTACTTCGAtat
cagtgaaaatgaaagtcttCTTGTTTCGAAACTAGCCCATTCCAGGTCCA
TAGATGACGTAGTAGTGTTATGGAGGAAGTCTTTTTCGTATATCGAATCA
ACCatcttccaacaacttccaCAGTGCGTCCGAGATGGATACAAGCTTAC
AAAATTCATCCGTCATCAAAAGTTATGCCCTGCTTATTCTAAATCTTATT
CACgtaatattgacaaaatgattACGAgttacatgttaaaaacatgTTTG
TTTCATGAAATTGCAATGGATATCAAAGCAAGCTCTGGCAAACCGCAATT
TGATATTCATACTCCTGCTGAATGGGGTACAAAAATTTTAAGTAGGCTTG
AAAAGTTTATGAAAAGATCAAGCAATGTACAAGCTTATTATGACGAGAAA
ACAGTTTTACATGTTCCTTTGGACCTTGTATTTGAAGGAAAGACTAGTAA
AAGGGTTATTGCATTTTGCGAAATTGGAAAAGAATGGTTGCGACACCCAT
GGGATTTTATCGATTAAATGAATAAGTACGATTTGGAGCAACGTGTGCTC
AGATACCTTAAGAAAAATTATGGAGATCCGGTGCTCATTGGAAAGATTGA
CGTGGAAGAGGTTACTAAATTTATCATCGATCAGTCGACCGCTTTGTGTA
ATCTAAAGAAGCACGAGGCGTTAAAATCAGGTGTGGAAAGAAGCGACCAG
GAGAAAGCAATCCTCTATAAATTCGTCAAGATTCGTGtcgaaaaaagcaa
agaatctgctgaaaaggattttcaactTGAAAGTGACCTCATTGAGATTG
CTAATAACACATTCGAATTACTAATGGATCCATCTAATGTAATTTCTGCA
CGTGTAAAATCTGACACTATTCTACACTTTGTCACCCGCCTAAAGTATGA
CACTATTTTCATGGATGAACTGTTACATCTAGGAGCTGATATCAATGCAA
AAAATACGTACGGAAAAACACCCTTTTCATTAGCTGTTTCAAACTACGAT
TATGGGGCAATGGAAATGATGCTGAATAAAGCAAACAAATCCTCCGTTGA
CATACAAAAGACTTTATTTCAAGCTGTTTGTTTTATCCCAGTACTTTTCT
CGCTGAAACAAATTGCGGAACTGTTCGAATTCTTTAAAAGATATGGCTTT
GATATGAATCTCAGAAACGAATCACAAATATCACTGGCAGAGCACTACAT
ATCTTCTTCAAAGGAACTTTCACTAAAAGTGGTCAAGTATCTGGTTAACA
ATTGCCACGCGAGCTGTTTAAGGAAAAGAGATGGGTCATCTCTGATTCAA
ACATTAATCAAAAAGCAGTCATTTTTCCCAGTGGATCCTTCAGTTTTGGA
GTACCTCTGTAAATTGGACGAGCAAGACATCAACGAGAAAGACGCTGAGC
AAATGACCCCTCTGATAAATGCAATCACCAAGTCTTCAGTTGACCTGTGT
AAAGTGCTCCTGGAAGTGGGAGTAGATATTAATATTGTTTACAATCAAGG
TATGACATGTCTACATTACGCGGTGTCTGTTTCTCCCAACAGACAGTTTT
CCGGGCATGAAAAAATTGTTCATTTATTACTTAAAAAAGGTGCTTCGGTC
GATGCTGTGGATTGCTACGGAGATCCTCCGATTGTGTATGCAGCAGCAAC
GGGAAATATAAAGATTCTTAAAATATTGTACGAAAAAAACAAGCAGTTGG
GCGGGGAAGTGAATGATCAGCTTTTTGAGCGAATGATTTCACTGGCAGAA
CTTCATGGACACGATCAGGTAATTAGAGAGGTTGAAAAGTTACGTGATCC
TGAATTCGGGAAACCAAACAAGCGCTATTGCAAATGTGTTTCTGTGCTTT
ACCATTGGCCAACTTCGTCTGAGCCCAACCGGGGGTTAAGCGTGAATGAA
CTACAACGACTTGTTGCACAAACGAAGAAAACAATCTCATTGGCGGATGA
CACTTATAAAAATTGGTTGAAACATAAAGTCGAAGATACGATATTTAAAG
AGAAAAACGGACCGAGCCCTCTTGTCTTTCACAAATTCTTTGTCCGAGAT
AAAAGactaaaaatggaaaatcttGAGATACAAGAACAGTTGACAGAACT
TTTAAATCGTATCGCAGAGTTTGGAAAATTGATTGACCCGAATTTGTCAT
TTAAACCAATTCTTTCAGGAAGCAATACCGAGGGAACGAAAATTGGACTT
CTCGATGAAATAGACTTTCTCTGTCACATAGAATTTCCTGTCAAGTTAGA
ATATCAGATTACTACAGACATtaaaacaccaaatttgaaGAGAATTGAAA
TCACAAATGTCGAAGAGATAGCTGACGGTATGAACGAACTGTTTTACAAT
GACAATAATGGTAAATCATATCTTTCCGCCAAGATTGCCCATCGACTTTG
GAAAGTCTTTGTCTCGTCTTTCAAGCATAATAAAATTTGGGAAGGATTAA
ATTTGTCAATGCCATGGTGGGAAAAGAAGGATTTCTTTAAGCGAGACATA
CTCAGGTTCATTTCGACAACCAACTTTATTTGGAacagccaaaatgttaa
gatgCTAACAATCTCAATCGATCTTGTTCCTACACTTTTGCTTAaagacg
acgaaaaaaaaattcaagaaaatccaCCATCCGAAACTTTTCGAACTCTT
AAGAGCTACTTCGAtatcagtgaaaatgaaagtcttCTTGTTTCGAAACT
AGCCCATTCCAGGTCCATAGATGACGTAGTAGTGTTATGGAGGAAGTCTT
TTTCGTATATCGAATCAACCatcttccaacaacttccaCAGTGCGTCCGA
GATGGATACAAGCTTACAAAATTCATCCGTCATCAAAAGTTATGCCCTGC
TTATTCTAAATCTTATTCACgtaatattgacaaaatgattACGAgttaca
tgttaaaaacatgTTTGTTTCATGAAATTGCAATGGATATCAAAGCAAGC
TCTGGCAAACCGCAATTTGATATTCATACTCCTGCTGAATGGGGTACAAA
AATTTTAAGTAGGCTTGAAAAGTTTATGAAAAGATCAAGCAATGTACAAG
CTTATTATGACGAGAAAACAGTTTTACATGTTCCTTTGGACCTTGTATTT
GAAGGAAAGACTAGTAAAAGGGTTATTGCATTTTGCGAAATTGGAAAAGA
ATGGTTGCGACACCCATGGGATTTTATCGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010521XLOC_010521Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018790-proteinTCONS_00018790-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018790-exon-sc0000306-1491911889:302722..302903TCONS_00018790-exon-sc0000306-1491911889:302722..302903Clytia hemisphaericaexon
TCONS_00018790-exon-sc0000306-1510915933:302722..302903TCONS_00018790-exon-sc0000306-1510915933:302722..302903Clytia hemisphaericaexon
TCONS_00018790-exon-sc0000306-1575043694:302722..302903TCONS_00018790-exon-sc0000306-1575043694:302722..302903Clytia hemisphaericaexon
TCONS_00018790-exon-sc0000306-1491911889:304607..307356TCONS_00018790-exon-sc0000306-1491911889:304607..307356Clytia hemisphaericaexon
TCONS_00018790-exon-sc0000306-1510915933:304607..307356TCONS_00018790-exon-sc0000306-1510915933:304607..307356Clytia hemisphaericaexon
TCONS_00018790-exon-sc0000306-1575043694:304607..307356TCONS_00018790-exon-sc0000306-1575043694:304607..307356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000306supercontigsc0000306:302722..307356 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.065783 0.0641272 0.0296221 0.130466 1.00374 0.650974 0.472099 0.222701 0.135147 0.451004 0.407935 0.19397 0.451472 0.220238 0.550887 0.978948 0.489511 0.279275 0.382783 0.146041 0.379114 0.399117 0.803864 0.952631 1.63483 3.33929 2.40027 2.35969 0.0588047 0.154781
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
IPR024810Mab-21_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top