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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018788 ID=TCONS_00018788|Name=TCONS_00018788|organism=Clytia hemisphaerica|type=transcript|length=2252bpRun BLAST on NCBI transcript from alignment at sc0000306:263293..280135+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018788 ID=TCONS_00018788|Name=TCONS_00018788|organism=Clytia hemisphaerica|type=transcript|length=16843bp|location=Sequence derived from alignment at sc0000306:263293..280135+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018788 vs. Swiss-Prot (Human)
Match: AMPE (Glutamyl aminopeptidase OS=Homo sapiens GN=ENPEP PE=1 SV=3) HSP 1 Score: 349.362 bits (895), Expect = 4.828e-106 Identity = 190/448 (42.41%), Postives = 266/448 (59.38%), Query Frame = 2
Query: 872 YHNIRLPEYIRPIHYEIDLEINMEKDIVDGTTKIKTEVSKRTKYVMVHAMKFNNIEVVVKSFDSQETYPLERKHGSNGGFLYKPNLYFVIEAQDFFEV----GTYSLEFKFDYNLRKDLAGFYSSNYENEKGETRKVAATQFAPVDARSAFPCFDEPAMKATFDISMKRDKSYLALSNMPVIRTEADGDEVT--NYFKTTPIVSTYLIVFVICDFKSKMVVANTTVPTNMTYYAPSLQIDQVGYAMDVGSKVLPHLESYYNVSYPLPKADMIAIPSLSYRAMEHWGLITYRAIALLYDKHNSASSDKFLVSRIVAHELAHQWFGNIVTMDWWSDLWLNEGFASYIQFIGMDKVHPDWKALDFQLTRDVANAMDLDSLISSHPIYIEVERPEDIDQIFDAISYAKGGSILRMLDNFLGEEVFKKGLNIYLRRFSYKNAKSSDLWEALSE 2197
+ N RLP+++ P+HY++ ++ +E+D GT I +S T+Y+ +H + + S + + R F YK Y V+EA++ G Y L +F L L GFY + Y E G+ + + AT P DAR +FPCFDEP KAT+ IS+ K Y ALSNMPV + E+ D+ T + K+ P+ STYL+ F + F S ++N+ P +T Y Q YA ++ V + E Y+ ++Y LPK D IAIP AME+WGLITYR LLYD SASS++ V+ +VAHEL HQWFGNIVTMDWW DLWLNEGFAS+ +F+G++ DW+ D L DV + DSL+SSHPI + V P++I +FD ISY+KG SILRML++++ E F+KG +YL ++ +KNAK+SD W AL E
Sbjct: 88 WKNFRLPDFVNPVHYDLHVKPLLEEDTYTGTVSISINLSAPTRYLWLHLRETRITRLPELKRPSGDQVQVRR------CFEYKKQEYVVVEAEEELTPSSGDGLYLLTMEFAGWLNGSLVGFYRTTY-TENGQVKSIVATDHEPTDARKSFPCFDEPNKKATYTISITHPKEYGALSNMPVAKEESVDDKWTRTTFEKSVPM-STYLVCFAVHQFDSVKRISNSGKP--LTIYVQPEQKHTAEYAANITKSVFDYFEEYFAMNYSLPKLDKIAIPDFGTGAMENWGLITYRETNLLYDPKESASSNQQRVATVVAHELVHQWFGNIVTMDWWEDLWLNEGFASFFEFLGVNHAETDWQMRDQMLLEDVLPVQEDDSLMSSHPIIVTVTTPDEITSVFDGISYSKGSSILRMLEDWIKPENFQKGCQMYLEKYQFKNAKTSDFWAALEE 525 The following BLAST results are available for this feature:
BLAST of TCONS_00018788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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