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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018787 ID=TCONS_00018787|Name=TCONS_00018787|organism=Clytia hemisphaerica|type=transcript|length=1274bp
CGCTACTTTCCGCCTCGCTCTGAAACGAAATGAAGTTATTTTATTGGTTG
AATTCAATTGTTTCGttacttctaaccaatagagcGGCTTTATTTCGTTT
CTGAGTGGAACGAAACCGTTGTCTGCCAACATGGTCTAATTAACTTCAAG
TCACTATACGAATACGAATACGTCAGTGTTCGGTACAATTGACGCTttct
aatttgattttcaaggaGAGTTGGACTTTCATCGAAAAATTCTGAAGATC
CCCCAAGCAAACGACAAAAGATTGCATAAACAAAACACGTACACACACTT
ATAATAAACAGAATTAATTTTGGGTGACGGTATGTAATTTTTTTGGTGTT
GACGAAAAAAATGACtgaattttatttataaaatggACATgtctaatttt
attttttagaaaaagaaaaatctattttattttgttatttatatCAGCAA
TTaaaattcaaccaaaaatattttaggtatttttcagttgatgatttgtt
ttttatgaaagtaagtttgaaaaattcgGTTTCAggtttatgttttaaaa
tttgcTTTTTGAGGAACATCTTTTATTATTGAAGGATTATTTTccctgtt
ttttttatttctaaattcTCTTTTTCAATTTAGAAACCTTTCGCACTTAA
GAACCATGATACTAATTTTTAGGGATTtctagatttttaaaagaatagta
aaattgataaaaaattgaaagataaaGATCTAATAGTGACattgcaaaaa
tttttcttttttctgtttgAAACCATCcccatttaaattttttttctgtt
tttaggtttgagatattttaagCTTTTAGTCACCCAATACTCCAGTTTTT
TACATAACAGCGAGGCTCAAAAACGCTGAGAAATGAGAACAGTTAAAGAA
CAAAGCTGAGCCTGGAATTTCTTAATTTCAAGTGAgtcaaaaacgtaaaa
atttgattgaaacCTAAATTGCCTCTATTTTGACCGAAAATAAAACAGTA
TTACGAGAATTTTGTGCCGCAAGTGCCTCTGCAAAAATTTAGGCCTTTAA
AAACAATTGTAGcattttttgatagtttttccNGCCGCAAGTGCCTCTGC
AAAAATTTAGGCCTTTAAAAACAATTGTAGCattttttggtagtttttcc
ttTTAGTTTTCTTAGATCTTTATTGTTACgttgttctcattttttttaat
tgggccattccaataaatctccatacaggggggggggtggacgtATAGTA
TAGGTATGTGTGAATACCCtctgg Run BLAST on NCBI transcript from alignment at sc0000306:253312..255312+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018787 ID=TCONS_00018787|Name=TCONS_00018787|organism=Clytia hemisphaerica|type=transcript|length=2001bp|location=Sequence derived from alignment at sc0000306:253312..255312+ (Clytia hemisphaerica)
CGCTACTTTCCGCCTCGCTCTGAAACGAAATGAAGTTATTTTATTGGTTG
AATTCAATTGTTTCGttacttctaaccaatagagcGGCTTTATTTCGTTT
CTGAGTGGAACGAAACCGTTGTCTGCCAACATGGTCTAATTAACTTCAAG
TCACTATACGAATACGAATACGTCAGTGTTCGGTACAATTGACGCTttct
aatttgattttcaaggaGAGTTGGACTTTCATCGAAAAATGtaagcgtcg
tttatgagagtttcttgttggcGATATTTCGCCAGTTAATTTTTATAAAC
TATATGAGCACACGCGGGCGACCTCCGTGATATACACTATGCAAAAATTC
TACTTACACCCCCCCCCAATACATTGAACGTATGTAATGTAGCAATACAT
TGAACGTATGTAGACGCAAATCAAGTTATAAGCTATCAAGTTAGAACAGA
AGAGGAAAACCATACGATTCTTGCTTATTTACTCATTCATTGACTCGTTC
ATtcatccattcattcattcatccattCAGTCTGAAGATCCCCCAAGCAA
ACGACAAAAGATTGCATAAACAAAACACGTACACACACTTATAATAAACA
GGTACTCTCCCTCCCACCCTGACTTTTACTCCCTCCCCCACCCTGACTTT
TACTACCTCTCCCACCCTAACTTTTACTCCCTCTCCCACCCTGACTTTAC
TCCCTCTCCCACCCTGACTTTTACTACCTCTCCCACCCTAACTTTACTCC
CTCTCCCACCCTGACTTTTACTCCTTTCCAGTAGGTCacagaaaaatgag
aaaatgagaaaaatatacATGAGAGAGATATACATTTTTTGTCATTTCCA
GTCAATGTTGAagccaatttcaaaaaaaggcCTAATCTTTTTTTACGTAA
ACATGAATTTGAGGATTCTcttaaaaaaagattgaaaactcGAAGAGCTG
TTACAATCTGCTCTCTTCTTTCGCAGAGGGGGGACTGAAAAAATATGTCG
TAgtttaattgttttcttttttttcttatcaTTCTCAGAATTAATTTTGG
GTGACGGTATGTAATTTTTTTGGTGTTGACGAAAAAAATGACtgaatttt
atttataaaatggACATgtctaattttattttttagaaaaagaaaaatct
attttattttgttatttatatCAGCAATTaaaattcaaccaaaaatattt
taggtatttttcagttgatgatttgttttttatgaaagtaagtttgaaaa
attcgGTTTCAggtttatgttttaaaatttgcTTTTTGAGGAACATCTTT
TATTATTGAAGGATTATTTTccctgttttttttatttctaaattcTCTTT
TTCAATTTAGAAACCTTTCGCACTTAAGAACCATGATACTAATTTTTAGG
GATTtctagatttttaaaagaatagtaaaattgataaaaaattgaaagat
aaaGATCTAATAGTGACattgcaaaaatttttcttttttctgtttgAAAC
CATCcccatttaaattttttttctgtttttaggtttgagatattttaagC
TTTTAGTCACCCAATACTCCAGTTTTTTACATAACAGCGAGGCTCAAAAA
CGCTGAGAAATGAGAACAGTTAAAGAACAAAGCTGAGCCTGGAATTTCTT
AATTTCAAGTGAgtcaaaaacgtaaaaatttgattgaaacCTAAATTGCC
TCTATTTTGACCGAAAATAAAACAGTATTACGAGAATTTTGTGCCGCAAG
TGCCTCTGCAAAAATTTAGGCCTTTAAAAACAATTGTAGcattttttgat
agtttttccNGCCGCAAGTGCCTCTGCAAAAATTTAGGCCTTTAAAAACA
ATTGTAGCattttttggtagtttttccttTTAGTTTTCTTAGATCTTTAT
TGTTACgttgttctcattttttttaattgggccattccaataaatctcca
tacaggggggggggtggacgtATAGTATAGGTATGTGTGAATACCCtctg
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018787-exon-sc0000306-1491911889:253312..253551 | TCONS_00018787-exon-sc0000306-1491911889:253312..253551 | Clytia hemisphaerica | exon |
| TCONS_00018787-exon-sc0000306-1510915933:253312..253551 | TCONS_00018787-exon-sc0000306-1510915933:253312..253551 | Clytia hemisphaerica | exon |
| TCONS_00018787-exon-sc0000306-1575043694:253312..253551 | TCONS_00018787-exon-sc0000306-1575043694:253312..253551 | Clytia hemisphaerica | exon |
| TCONS_00018787-exon-sc0000306-1491911889:253842..253912 | TCONS_00018787-exon-sc0000306-1491911889:253842..253912 | Clytia hemisphaerica | exon |
| TCONS_00018787-exon-sc0000306-1510915933:253842..253912 | TCONS_00018787-exon-sc0000306-1510915933:253842..253912 | Clytia hemisphaerica | exon |
| TCONS_00018787-exon-sc0000306-1575043694:253842..253912 | TCONS_00018787-exon-sc0000306-1575043694:253842..253912 | Clytia hemisphaerica | exon |
| TCONS_00018787-exon-sc0000306-1491911889:254350..255312 | TCONS_00018787-exon-sc0000306-1491911889:254350..255312 | Clytia hemisphaerica | exon |
| TCONS_00018787-exon-sc0000306-1510915933:254350..255312 | TCONS_00018787-exon-sc0000306-1510915933:254350..255312 | Clytia hemisphaerica | exon |
| TCONS_00018787-exon-sc0000306-1575043694:254350..255312 | TCONS_00018787-exon-sc0000306-1575043694:254350..255312 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000306 | supercontig | sc0000306:253312..255312 + |
Blast
The following BLAST results are available for this feature:
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