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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018776 ID=TCONS_00018776|Name=TCONS_00018776|organism=Clytia hemisphaerica|type=transcript|length=1381bpRun BLAST on NCBI protein sequence of TCONS_00018776-protein >TCONS_00018776-protein ID=TCONS_00018776-protein|Name=TCONS_00018776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp MGMEKYDRETKKLVGRGAFGHVYLYQSLSDRKEIIIKQITIDDLTTDQRKRun BLAST on NCBI transcript from alignment at sc0000306:166986..186112+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018776 ID=TCONS_00018776|Name=TCONS_00018776|organism=Clytia hemisphaerica|type=transcript|length=19127bp|location=Sequence derived from alignment at sc0000306:166986..186112+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000306:166986..186112+ >TCONS_00018776 ID=TCONS_00018776|Name=TCONS_00018776|organism=Clytia hemisphaerica|type=CDS|length=12060bp|location=Sequence derived from alignment at sc0000306:166986..186112+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018776 vs. Swiss-Prot (Human)
Match: NEK8 (Serine/threonine-protein kinase Nek8 OS=Homo sapiens GN=NEK8 PE=1 SV=1) HSP 1 Score: 308.916 bits (790), Expect = 1.338e-96 Identity = 168/404 (41.58%), Postives = 234/404 (57.92%), Query Frame = 1
Query: 181 MEKYDRETKKLVGRGAFGHVYLYQSLSDRKEIIIKQITIDDLTTDQRKGVMNEINLSSMFDHPNIIKYMEYFLEDNVFNIVMEYAAGGNLYDYLHQRQKEDRFLEEEEVTKFFVQIVRALHHIHRYYILHRDMKTHNILLDRRKKVIKICDFGISKFLTQTS-AETTVGTAHYMSPEVVEGKSYNYKSDIWSLGCILHELITLKRTFDAEFLSAIISKILRCDYSPMPMNYSDELRQLVKDILQIDPAKRPDVNAILAAPVLINAYFDLETDVGRIPCYHWNSGNNAQRRKPKKGDKSDRSGTNQSAXXXXXXXXXXXXXXXXXIGAVDDSVYRTQSFTSWG---DEATRANHEQTSIVYMWGSVSDTPTLLTLPFHDQLVTSVYTGKTKKLGLTSYGRVVSWE 1380
MEKY+R ++VGRGAFG V+L +D+K +IIKQI ++ +T ++R+ NE + + +HPN+I+Y E FLED I MEYA GG L +++ +R + LEEE + FFVQI+ ALHH+H + ILHRD+KT NILLD+ + V+KI DFGISK L+ S A T VGT Y+SPE+ EGK YN KSDIW+LGC+L+EL +LKR F+A L A++ KI+ ++P+ YS ELRQLV +L ++PA+RP ++ I+A P+ I A +L TDVG + + R+ +K +G+ RT S G A S VY WG TP L LP + V V G+T+K G+T GR++ WE
Sbjct: 1 MEKYER--IRVVGRGAFGIVHLCLRKADQKLVIIKQIPVEQMTKEERQAAQNECQVLKLLNHPNVIEYYENFLEDKALMIAMEYAPGGTLAEFIQKRC--NSLLEEETILHFFVQILLALHHVHTHLILHRDLKTQNILLDKHRMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFAPISDRYSPELRQLVLSLLSLEPAQRPPLSHIMAQPLCIRALLNLHTDVGSV-----------RMRRAEKSVAPSNTGS------------------------------RTTSVRCRGIPRGPVRPAIPPPLSSVYAWGGGLGTP--LRLPMLNTEVVQVAAGRTQKAGVTRSGRLILWE 357 The following BLAST results are available for this feature:
BLAST of TCONS_00018776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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