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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018767 ID=TCONS_00018767|Name=TCONS_00018767|organism=Clytia hemisphaerica|type=transcript|length=1636bp
CGGGGGTCCAATGTATGTCATCCACGATGACTTGACtataaaaatgttga
aagaTTAGGGCAATGTTGCTATTTTGTTTTCAGTTTCCTATAGAGAAACA
ATagaaacacaaaaataaaaaaggtataCTTGCAAAGACAGAGATTGACT
ATGGAAGGCGATAAAGAATTAAGGAAATCCATTCAAGCTAATTTGGGCCG
CTGGATCAAAAAGTTGAGTTGTGATGGTGATGCTGTTGAGAAATTaagat
ataaaatgaaatttgtgaAACAGTTGAAGGAAATGCCGATcgctatcaaa
acaaaagaagcaaATGATCAACATTATGAGGTGGATACAGATTTTTATCT
CACTATCCTTGGAGACAGGTTGAAATACAGTAGTTGCTATTTCCCATCCG
AGTCGAGTACATTAGAGGAGGCTGAAGACTGCATGTTAGAGATGATTTGT
GATAGAGCACGTGTTACCGATGGATTGAAAATAATGGATTTGGGATGTGG
TTGGGGTGTGACTGGATTATACATTGTGGAGAAATTCCGGAATTGTGATG
TCACATGTATTTCCAATTCGTCAACTCAAGCTGCACTGATCAACAAAAGG
GCTGCTGAGAGAGGGTATTCTAACAGATTGAGATGTATCACAGCTGATGC
TAACGTCTTCACCACAGAGGAAAGGTTTGACCGTATCATCTCTGTTGAAA
TGTTTGAGCACATGAAGAATTATGATAACCTGATGTCTCGTGTATCTTCA
TGGTTGAAACCTGCTGGTTACCTATTCACACATATTTTGTGTCACCGTGA
ATATTGTTATCACTTCAAAGAGAGCAAGGATGAGGCTACTGGCTGGATGG
CTAAACATTTTTTCAGCGGTGGCACCATGCCTTCCAGCGATCTATTTCTG
TATTTCCAGAAAGATTTGAGTGTAGTTGACCACTGGAATGTCAATGGCAT
CCATTACTCAAGAACCCTGGAGGCTTGGCTAGACCGGTTAGACGCCAACC
GTGACCGTGTTTATGAGATCTTGCACCGCCAACATGGAGATGAAACAGAT
AAGCAGATTTTTAACTGGCGCATGTTTTTCATTTATTGTTCAGAAGTTTT
CAAATATGATGGTGGCAATGAATGGTTGGTGTCTCACCATTTGTTTCAAA
AGAACCAACATTGCAAATTGTAGGCTCTGGTGATGTCGACAGAACTGATG
TCTAAGTTAGATTAGATTATTGGTTGGAAGGCTTAAGAAAtggttttaat
tttattcaCTGTGTAGGAAGATTTTCAGAATAAATTGAGAAACACGGCTG
ACTTAACCCGTGATATATTCAaccaatagatcttatcggagtttttgatt
tttctaaaaaagcgatgcattgttgGATTGTTTCAGGAGTattaaaatag
aaatctcttaggaattcctcaagggaattctattgtagtactcccgaaac
aatcccacaatgcatcgtttttttagaaaaatcgaaaattccgataagat
ctattcatCAAATATATTGTAGATAATATGTAGACCAGCTTACTTTGATT
GATATAATCAAAAAGTTATAATATGATTTATACGTATTTTTGACTCTTTC
TTTGATTTGAGTGCAAACTTTATTAATCATAACATT Run BLAST on NCBI transcript from alignment at sc0000306:96802..100271+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018767 ID=TCONS_00018767|Name=TCONS_00018767|organism=Clytia hemisphaerica|type=transcript|length=3470bp|location=Sequence derived from alignment at sc0000306:96802..100271+ (Clytia hemisphaerica)
CGGGGGTCCAATGTATGTCATCCACGATGACTTGACtataaaaatgttga
aagaTTAGGGCAATGTTGCTATTTTGTTTTCAGTTTCCTATAGAGAAACA
ATagaaacacaaaaataaaaaaggtataCTTGCAAAGACAGAGATTGACT
ATGGAAGGCGATAAAGAATTAAGGAAATCCATTCAAGCTAATTTGGGCCG
CTGGATCAAAAAGTTGAGTTGTGATGGTGATGCTGTTGAGAAATTaagat
ataaaatgaaatttgtgaAACAGTTGAAGGAAATGCCGATcgctatcaaa
acaaaagaagcaaATGATCAACATTATGAGGTAAATGCGATGTTTTGTAA
AAGTTTTCTCCTTCACACGGTTTCCTGTTAAAAGGATTNatcaattactt
aggtattagattgattggctctttcattttctacgattttttgcataaag
attcataattataaaccctcaaatgtgacgggcCCGATTTTTGGAGAGAN
tggacctaccccggtggaggtcctataaattaacctttgtccgtctgtcc
gtccgtctgtccgtccgtccgttagttaccagcttttctcaagattggct
cattagttttttctgacttttttcacaatgatgcaaaatggcaatgccca
aaatgtgacggagtccgattttcgaaaaaaaaatttttgNGGGgtatatt
tcagctaaaaaaacgtgacctaacttataaacgtgttaaatgcataatcc
aggtaggtccatcaaagtatcacttgttttggtcatttttcatgaTAACT
GATTAGTGGCAACTGGAAAGGGAAAGTCACTTGGAATAACAACCTTGGAC
AATCAGTATTTTGAAGGTTGAGGAGTGCCAAACATTAATCAAGGATCTTG
TCTATGAAAATATCCTTGCTTCATTCAGATTTCTAcacattttttcatgt
tttaaacTTCTGTAAAACTTTATCTTAAAGGTGGATACAGATTTTTATCT
CACTATCCTTGGAGACAGGTTGAAANagggtaccatcataggtataagat
ggctcaagcagatttttgcaaaaaaattttgttggctcaaaaaacgcatg
tttatctataagaatcaatattaataagcatacatcgatgttcttagtca
aGNAATACAGTAGTTGCTATTTCCCATCCGAGTCGAGTACATTAGAGGAG
GCTGAAGACTGCATGTTAGAGATGATTTGTGATAGAGCACGTGTTACCGA
TGGATTGAAAATAATGGATTTGGGATGTGGTTGGGGTGTGACTGGATTAT
ACATTGTGGAGAAATTCCGGAATTGTGATGTCACATGTATTTCCAATTCG
TCAACTCAAGCTGCATTGATCAACAAAAGGGCTGCTGAGAGAGGGTATGA
ATGTGGTTTTGTATTATTTAgagaagatttttttaaagacttccagttga
tacatttttatttgTTCTATATTTTGTCTAANaattcgatatttttttat
aagcacattatcaattacttaggtattggcttttctcgagattggctctt
tcattctttatgatttttacacatagatgcataactataaacccttgaat
gtgacaggacccgattttctaaaaaaaatgtttttgggcaaatttgggtN
TAAGTTTTCTCCTTCACACGGTTTCCTGTTAAAAggattaatttttttgg
tcatttttcatgaTAATTTATAAGTGGTTAACTGGAAAGGGATAGTCACT
TGGAATAACAACTGATGATTTCTTTTCCAAACTTTTGAGAATGTAAAACC
TTGGGTTGGAAAATCAGTATTTTAATGGTTGAAGAGTGCCAAACATTAAT
CAAGGATCTTGTCTATGAAAATATCCTTGCTTCATTCAGATTTCTAcaca
ttttttcatgttttaaacTTCTGTAAAACTTTATCTTTAAAGGTGGATAC
AGATTTTTATCTCACTATCCTTGGAGACAGGTTGAAATACAGTAGTTGCT
ATTTCCCATCCGAGTCGAGTACATTAGAGGAGGCTGAAGACTGCATGTTA
GAGATGATTTGTGATAGAGCACGTGTTACCGATGGATTGAAAATAATGGA
TTTGGGATGTGGTTGGGGTGTGACTGGATTATACATTGTGGAGAAATTCC
GGAATTGTGATGTCACATGTATTTCCAATTCGTCAACTCAAGCTGCACTG
ATCAACAAAAGGGCTGCTGAGAGAGGGTATGAATGTGGTTTTGTATTATT
TAGAGAAGATCTTTTAAAAGACTTCCAgttgatacatttttatttgTTCT
ATATTTTGTCTCAATGAttagtattttttcattaaattttgtcaTCCTTC
ATTAAAATCTAGCTCAAAATGACATCAGTCCCATCTGAAAAGCCAGAGAG
GATAGGAGAATTATAACAatacttttaaaaagtatttcttttaaacagGT
ATTCTAACAGATTGAGATGTATCACAGCTGATGCTAACGTCTTCACCACA
GAGGAAAGGTTTGACCGTATCATCTCTGTTGAAATGTTTGAGCACATGAA
GAATTATGATAACCTGATGTCTCGTGTATCTTCATGGTTGAAACCTGCTG
GTTACCTATTCACACATATTTTGTGTCACCGTGAATATTGTTATCACTTC
AAAGAGAGCAAGGATGAGGCTACTGGCTGGATGGCTAAACATTTTTTCAG
CGGTGGCACCATGCCTTCCAGCGATCTATTTCTGTATTTCCAGAAAGATT
TGAGTGTAGTTGACCACTGGAATGTCAATGGCATCCATTACTCAAGAACC
CTGGAGGCTTGGCTAGACCGGTTAGACGCCAACCGTGACCGTGTTTATGA
GATCTTGCACCGCCAACATGGAGATGAAACAGATAAGCAGATTTTTAACT
GGCGCATGTTTTTCATTTATTGTTCAGAAGTTTTCAAATATGATGGTGGC
AATGAATGGTTGGTGTCTCACCATTTGTTTCAAAAGAACCAACATTGCAA
ATTGTAGGCTCTGGTGATGTCGACAGAACTGATGTCTAAGTTAGATTAGA
TTATTGGTTGGAAGGCTTAAGAAAtggttttaattttattcaCTGTGTAG
GAAGATTTTCAGAATAAATTGAGAAACACGGCTGACTTAACCCGTGATAT
ATTCAaccaatagatcttatcggagtttttgatttttctaaaaaagcgat
gcattgttgGATTGTTTCAGGAGTattaaaatagaaatctcttaggaatt
cctcaagggaattctattgtagtactcccgaaacaatcccacaatgcatc
gtttttttagaaaaatcgaaaattccgataagatctattcatCAAATATA
TTGTAGATAATATGTAGACCAGCTTACTTTGATTGATATAATCAAAAAGT
TATAATATGATTTATACGTATTTTTGACTCTTTCTTTGATTTGAGTGCAA
ACTTTATTAATCATAACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018767-exon-sc0000306-1491911889:96802..97131 | TCONS_00018767-exon-sc0000306-1491911889:96802..97131 | Clytia hemisphaerica | exon |
| TCONS_00018767-exon-sc0000306-1510915933:96802..97131 | TCONS_00018767-exon-sc0000306-1510915933:96802..97131 | Clytia hemisphaerica | exon |
| TCONS_00018767-exon-sc0000306-1575043694:96802..97131 | TCONS_00018767-exon-sc0000306-1575043694:96802..97131 | Clytia hemisphaerica | exon |
| TCONS_00018767-exon-sc0000306-1491911889:98744..99027 | TCONS_00018767-exon-sc0000306-1491911889:98744..99027 | Clytia hemisphaerica | exon |
| TCONS_00018767-exon-sc0000306-1510915933:98744..99027 | TCONS_00018767-exon-sc0000306-1510915933:98744..99027 | Clytia hemisphaerica | exon |
| TCONS_00018767-exon-sc0000306-1575043694:98744..99027 | TCONS_00018767-exon-sc0000306-1575043694:98744..99027 | Clytia hemisphaerica | exon |
| TCONS_00018767-exon-sc0000306-1491911889:99250..100271 | TCONS_00018767-exon-sc0000306-1491911889:99250..100271 | Clytia hemisphaerica | exon |
| TCONS_00018767-exon-sc0000306-1510915933:99250..100271 | TCONS_00018767-exon-sc0000306-1510915933:99250..100271 | Clytia hemisphaerica | exon |
| TCONS_00018767-exon-sc0000306-1575043694:99250..100271 | TCONS_00018767-exon-sc0000306-1575043694:99250..100271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000306 | supercontig | sc0000306:96802..100271 + |
Blast
The following BLAST results are available for this feature:
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