TCONS_00018756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018756
Unique NameTCONS_00018756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018756 ID=TCONS_00018756|Name=TCONS_00018756|organism=Clytia hemisphaerica|type=transcript|length=377bp
TACTTCCCCATCCCTCAAAAACCACAAATCAGTtctatttttgcttgaaa
acgaaagtgctattttggcgcgaaaatgTGTGGTTTTGAGCAATGGAAAA
AAGTTCGTTTGTTTACTTTCCATAATGGCGACTTCCCCAACACGTGAGGA
GCACCTAACCAGGctcttttcgatttttgaagttgaagCATGCATAGGGG
AAGCccttgttcaaaaattttttttttaaagacaatcAAAGACACTTGAG
ATTACTGAGAAAACATTGGATAAAGGCCCCCCTTCCCCCCCAAGGGCAAT
GTTCATTGTGTACGGCCGTCTCATCGTTCAGTGAACATTGCCAATGGGGG
GAAGCGGGGGAGACAGCTTGTAATCCT
Run BLAST on NCBI

transcript from alignment at sc0000305:189991..190367

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018756 ID=TCONS_00018756|Name=TCONS_00018756|organism=Clytia hemisphaerica|type=transcript|length=377bp|location=Sequence derived from alignment at sc0000305:189991..190367 (Clytia hemisphaerica)
AGGATTACAAGCTGTCTCCCCCGCTTCCCCCCATTGGCAATGTTCACTGA
ACGATGAGACGGCCGTACACAATGAACATTGCCCTTGGGGGGGAAGGGGG
GCCTTTATCCAATGTTTTCTCAGTAATCTCAAGTGTCTTTgattgtcttt
aaaaaaaaaatttttgaacaaggGCTTCCCCTATGCATGcttcaacttca
aaaatcgaaaagagCCTGGTTAGGTGCTCCTCACGTGTTGGGGAAGTCGC
CATTATGGAAAGTAAACAAACGAACTTTTTTCCATTGCTCAAAACCACAc
attttcgcgccaaaatagcactttcgttttcaagcaaaaatagaACTGAT
TTGTGGTTTTTGAGGGATGGGGAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010500XLOC_010500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018756-exon-sc0000305-1491911889:189991..190367TCONS_00018756-exon-sc0000305-1491911889:189991..190367Clytia hemisphaericaexon
TCONS_00018756-exon-sc0000305-1510915933:189991..190367TCONS_00018756-exon-sc0000305-1510915933:189991..190367Clytia hemisphaericaexon
TCONS_00018756-exon-sc0000305-1575043694:189991..190367TCONS_00018756-exon-sc0000305-1575043694:189991..190367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:189991..190367 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.211177	0.411862	0	0.467855	1.99349	2.02536	1.90051	1.01671	0.35591	1.32255	0.427901	1.54707	0	0.729279	0.35974	0.386056	0.634119	0.487464	0	0.469817	0.408356	0.597545	0.242131	0	0.906926	0.202352	1.15826	0.618065	0.70317	0.716419
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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