TCONS_00018748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018748
Unique NameTCONS_00018748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018748 ID=TCONS_00018748|Name=TCONS_00018748|organism=Clytia hemisphaerica|type=transcript|length=621bp
GTTTTAGTTCTAAAAATATAAGAAGTTACTTGAAAGTGATTGAATGAGAG
AAGATGACATCTGGAGACAATCCCCCACTGGACTCTGAAGATGGAGAGAA
GAAACAGTTGGTGGAAGGAAgaAAGAAGTATGATCCAAACTTCAAAGGAC
CAATCAAGAACAGgggTTGCACTGATGTTATTTGTTGTGTCATTTTTGGT
GTTTACATGCTCGGCATGATCGTCATTGGGGTTGTTGCTTATGTCGAGGG
AGATCCAAAAAGGTTGCTTTATGCTACTGATTCAAATGgaaaagtTTGTG
GAGCAGACATACCTGACAAGCCGTATTTGTATTTCTTTGATATGACCAAA
TGTTTAACAAAAGGAGCAAGTGACCCATTAGCCTTCGTAAAGCAAGGATT
CACCTGCCCGACACCACAAGTATGTGTAAAAGAATGTCCAAATTTTTATA
AAGCTGGTATTGACAAATCCATTCCAATCAAAGATTTGGTCTGTAAACCC
TCAGTCAATGTAACGGCACAGagtGATCTTTTTAAGCTTGTACAAAATGG
AGATTGTGCACCatattatattgagacagaagAAGTTTTCTACCGCTGTA
TCCCCAAAGTAGCAGCTGANG
Run BLAST on NCBI

transcript from alignment at sc0000305:325192..331808-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018748 ID=TCONS_00018748|Name=TCONS_00018748|organism=Clytia hemisphaerica|type=transcript|length=6617bp|location=Sequence derived from alignment at sc0000305:325192..331808- (Clytia hemisphaerica)
GTTTTAGTTCTAAAAATATAAGAAGTTACTTGAAAGTGATTGAATGAGAG
AAGATGACATCTGGAGACAATCCCCCACTGGACTCTGAAGATGGAGAGAA
GAAACAGTTGGTGGAAGGAAGTAAGATTCTTCAGATCTTTCCTGAATGAA
AATTTTTTGAAAATATTTCTAGCTATTCATATATTATGAACAGCTGAATG
TTGGAAGTAAACAAAATATTCCTGATGGTTTATAATGGTGAAATTGTACA
TACAGTAGTACAAATCTAAGGAGTCTCCATGTTTTATATAAGAACTATAT
ATGGTTGTTTCATTGCATCTTACTTCAGGCCTAAATTCATTCATTTCGCA
AAAAAATATCAAAATTCTGTATTAATAATGTATGAAGGATAATTAAAGTT
TAGTTATATTTCCAATATGAATGGAAACATTTTAAAGAATGAAATTTTGA
AATGGAAAGAAGAATTCCCACAGAGTTTTACATGAAATGAAGGAAAAAAG
GTTCTCTAGATTGATTTTGTTATCAGTTGGTGGAAACCCCCCTGAAGATT
TGAATGTTTCTTTATGGATGTTTATTTTTATTTATCTTTATTCAAAATGC
TACCAACACTAGCTGAACCAAGAATTTACTTTAAATATTTTGTCCTCTTT
TGCTTTATCAATCACTATAAAAAAAATATCTTTAAGATTTTTTAAAAAGT
TGTTTGAAATAATCCTTAGAAGTGTTATATTCTGTTTCTCTTTAATAACT
AAAGAAAACAAATATAATAAGACTTTATATGTGCTAATCTTGATCACTTA
ATTAGTTTCACCATAACAACTGACAACAAGTTGATTTCAAAGCTATATCA
TATTATTTACTTCCTTTTAATGAGTTAATTGTGACTACGTCTAATTGATG
ATAGTGCATGAAATGTTAATTTAAAAAAACTGTGATGAAATTTGTTGGTC
AGTGTTTCAAAGAAAGAAATGGGCAAGAAAAAAGGTGAATTTGCTCATGA
TATATCTAGATTATGATAAAGATGATAGCCTGATCTGGCCTGAAAGTGTT
GAATGAGAGTTTTATCGTTTATTTTTCTTTGTTTTCAGGAAAGAAGTATG
ATCCAAACTTCAAAGGACCAATCAAGAACAGGTATGATTCTTTAGGTTAT
TTTTATTATAATATTGCATTATACATAGTATTTTAATTTTTGACACAACC
ATGCAGTCTGTAAAAAAACAGTTGATCAAAATATTTGAATGAATTTTATA
GAAATATTTTCAATAGACACGGTGTTAAGGACAGTTAAGGAAAGTGAAGA
CTTTATTGTCCTTTTTTTATTCTAAATTCAATTTTTTTTTTAATTTTAGG
GGTTGCACTGATGTTATTTGTTGTGTCATTTTTGGTGTTTACATGCTCGG
CATGATCGTCATTGGGGTTGTTGGTTAGTTGATTTTCATTTTCACACAGT
TTGAATTATTTTGAGGCTTCATATTATATAATACATTAAATTATTCATCT
TTCAAGTACTGTGCTAAAACTCTTGGTTTGTTGAGTGAAATTAACCTCAA
GTTAAATTGTTTCATGGATACTATTTTTAAAGTAGGCCTATGCAAACCCT
TTCTAGCAGAAGGATGCTAAGTAATTTTATGCTTCATAAGCCCTTTAATT
GCATATTTCTTTCAGCTTATGTCGAGGGAGATCCAAAAAGGTTGCTTTAT
GCTACTGATTCAAATGGTAAGGTTTTCAGATTCTCATTCTTTATGACATT
CCTTTGTCCTATATCCAGCTATATCATTTGTCATTTTTATTTTTTTTGCC
ATAAAATCATGCTTTTCAATAAATTTTGTTTTGTTTGATGATATATCTAA
CAGAATTGCCATTCTCATTAAAATAATATTTTCTTTTTATTTCAGGAAAA
GTTTGTGGAGCAGACATGTAAGGATTGTACATTTTCTTGATAAACACACC
ACCCGAATGGCTAGCTATCAAAACTTGTGGAACCCTTTTACTATCAACAT
CTTTCTTGAACCTAACTTATTTATAATTGTAAAAACTTGAATACTCAAGG
GTTTCCTATGTAATCGTTTGTCTTTTCATTTTAGACCTGACAAGCCGTAT
TTGTATTTCTTTGATATGACCAAATGTTTAACAAAAGGAGCAAGTGACCC
ATTAGCCTTCGTAAAGCAAGGATTCACCTGCCCGACACCACAAGTGATTT
GATAATTATTTTCCTTCCATTTGACTGCTTTTATGCATAAAACAATCTAC
AGAGATACGATTGGGAAACAGCATCAGAACCATTCACCTCCCTCTCCTCT
TTTCTATTAATTTGTCCTGATTTAAGTNGATTTGATAATTATTTTCCTTC
CATTTGACTGCTTTTATGCATAAAACTATCTACAGAGATACGATTGGGAA
ACAGCATCAGAACCATTCACCTCCCTCTCCTCTTTTCTATTAATTTGATT
TTTTAAGCGAAATTTCAACTACTTTTCCTGAACTAAAGCAAGAAAGCAAA
AAATTTGCTTCAATTTTAGGTATGTGTAAAAGAATGTCCAAATTTTTATA
AAGCTGGTATTGACAAATCCATTCCAATCAAAGATTTGGTCTGTAAACCC
TCAGTCAATGTAACGGCACAGGTATTATTTATTTTATCGCTAAAAAGCTT
TCAGTCAATTTTATATTTAATTAACCCCTGGCAGCTGCAATTTTTTTTAT
AATTGGGTCAGATTAATCTCGTATCAAGGCTTGTTTAAACTTTGTTTTGC
CAGGGGGGGGGTCAAGCAGTTAGTACAAGACATNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTCCCACGTCCCAAAATGAC
AAAAATTTCTTTTGCATTTGAAACGAAATTTCTAGTGATCTTCAGTGGCT
AGTAATTAGCCTTTAAAGTGTGTGAAATATTGTGGCTAATTTTTTGAGTG
GCTAATTCTACCAACTAGTTTCAAAAAGGTGTAGCAGCTTCAATTTAAAA
GATCAGTCACCCAAATTTTGCACTGGTTATATTGAATAATAAAGTTTTGA
GATTATGTGAAAAAATGAGGGCTATTGATCCTTGAAAGTGAAATAATGTG
GTTAATAGACTTAAAATGCACCCAGAGACAAAAGTATTGAATAAAAAAGT
ATAATCGTGGAATTTGAATTTTTTTTGCTTGAGATGATACTTATTGAATG
GTTTTGTTTTCATTTTCTAAGGATACAGCATCAGAAATGTGAATTTAAGT
GGCTAAATTCTCCTTGCAATTGTGATGTTTGACTTGAGGAAAAACGTTTC
AACAGGCATTTTACGTACTGACTTTATTCACCATGTAAAAAAGCTGTAGT
TATGAAATTTTGGGATATTGTGCTAAATATGTGGCTAATTCAATAAGAAA
CACTTTTTGTAATACTTCCTGTATGATTTTGTGTTAAAATGTGTGGTTAT
TTGCATACTTAAGTAACTAGTAGTTTTTCTTCATTTTAAGCCTAATTTAT
AGATTTTCCCTGTCATTTATTGTCACAATTAATCACATATCAATTTTAAA
GAAAGGCATGCAAGTTATCAAAAGAAAGCCAATGACATTTTTGAAAGTTT
CAACAAGGTTATTTTTTTCACTCACGATGTGAAAAAATGTGGGTAGCCTT
TTTAACAATCCAGAAATCTTAGTAAGTCTTTTTAGCCACGTAGAATCACA
GGGCAACTATTAGTTGATACTTTTGAATTCAGAAAGTGAAAATTTGATCA
TCAAGCTATAGTCTCATACAATTCAGGTCTTTGGAATTCTTTTGTGAATG
GGTGTGGCTACCATTTAAAATAAGGACCTTTTTTCAAAAAAGTGTTTTTT
ATTAGCCGCATGATTTCACAAATTAGTAAGTAAATACTTCAAATATGTTC
TATTTTTTACTAATTTTTCAAGAACACCAGATTCATTATTTTCATCACTA
GTCTTTATTTGCTATATTGTTTTTTTAATTATTGAAAAAATATCAATACA
GCGAGTTCGAGCCACAATTTTTCACATTTACCACTTGAAATTCTTTCACA
TAAGTATATCTTAGAAAAATTCAATCTGCGATCTTCAACTTTGAACCAGT
TCCAAATATGGATATTCAATATGTGCTTAATTGAGGCTATTTCAAAAAAT
GATAGAAAAAGGGTAATATTAGCCTCAAAACTACACATTTTGATAAAAAA
GGAATTCCAGTGAATTCCTAGAGTCCTAATCCACAATCCTGTATTTTCCC
CTCTCTCATGAAACATTTGCTAAGAAGTTACAAGACATTATCCAAAATCA
ACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACGAACTTTTACAATTTCAAAATCGATCTGACTTTTTTCTTTTATTTATC
AATCTATAGTTAGGGAATTCCCCTGATATAGTGTTTAACTAAAGGGTAAT
ACAAAACAAACTCCAAAGGGGAAGGCTTAAATGTCTTAGGTTCTTTGATT
TCTCTTATGGAGGGGGATTTTCCTGATTGCTTTTAGTATTTATTTTTAAT
ATTTTTCTAGAAAAGGTAAAAAAGTAGCACTTAGTATTCATTTGTACTAA
CTGTTATCCTAGATTTTTTACTTGACACCACCCTAGCAGTCACTTAGTAC
CATCAAGTACTAACTGATTTTTGAAAATTTTGTAGGTATACCACCACGGT
ACTAACCGGCATGATGTCTTGTACTAACTGCTTGACCCCCCCCTGGTTTT
GCATCCATTTGGTCATAGTGTAGTTATTTGTTAATTCCTGATTAAAGTAT
CGTTATGAATAGTACACTTTCAATAATTGCACTTGGTTTGGCTGCTTTTT
GATGACTTCTCCCAAATTGCAAATTTCTTTTTCAGAGTGATCTTTTTAAG
CTTGTACAAAATGGAGATTGTGCACCATATTATATTGAGACAGAAGAAGG
TTTGTTACATTTTCTTGTTAGATTGTTCTAATTTTTGGCTGAGCATTGAA
ATTTTCAGTTATTTTAAATGTTATTTTAAAAAGAATCTTCCCGTGTCCAG
CCATGTTCTCCATGATGTTCTTATTTTGTTAAACTTCAGTTTGAATTTTC
TTGTATACTGGTTTCAAATGAAAAAGCTAGTCCAAAAATCTATTCCATCA
AAAGTTTCAGTAATTCACCCTCAAGATTATACTCAAGAACAAAATAGAAG
ATTATACAATAATTCTGATTTTTATTCTCAGTTTTCTACCGCTGTATCCC
CAAAGTAGCAGCTGANG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010492XLOC_010492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018748-exon-sc0000305-1575043694:331689..331808TCONS_00018748-exon-sc0000305-1575043694:331689..331808Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1575043694:330678..330720TCONS_00018748-exon-sc0000305-1575043694:330678..330720Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1575043694:330386..330459TCONS_00018748-exon-sc0000305-1575043694:330386..330459Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1575043694:330093..330143TCONS_00018748-exon-sc0000305-1575043694:330093..330143Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1575043694:329892..329913TCONS_00018748-exon-sc0000305-1575043694:329892..329913Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1575043694:329616..329724TCONS_00018748-exon-sc0000305-1575043694:329616..329724Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1575043694:329188..329289TCONS_00018748-exon-sc0000305-1575043694:329188..329289Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1575043694:325510..325573TCONS_00018748-exon-sc0000305-1575043694:325510..325573Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1575043694:325192..325227TCONS_00018748-exon-sc0000305-1575043694:325192..325227Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1510915933:331689..331808TCONS_00018748-exon-sc0000305-1510915933:331689..331808Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1510915933:330678..330720TCONS_00018748-exon-sc0000305-1510915933:330678..330720Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1510915933:330386..330459TCONS_00018748-exon-sc0000305-1510915933:330386..330459Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1510915933:330093..330143TCONS_00018748-exon-sc0000305-1510915933:330093..330143Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1510915933:329892..329913TCONS_00018748-exon-sc0000305-1510915933:329892..329913Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1510915933:329616..329724TCONS_00018748-exon-sc0000305-1510915933:329616..329724Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1510915933:329188..329289TCONS_00018748-exon-sc0000305-1510915933:329188..329289Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1510915933:325510..325573TCONS_00018748-exon-sc0000305-1510915933:325510..325573Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1510915933:325192..325227TCONS_00018748-exon-sc0000305-1510915933:325192..325227Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1491911889:331689..331808TCONS_00018748-exon-sc0000305-1491911889:331689..331808Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1491911889:330678..330720TCONS_00018748-exon-sc0000305-1491911889:330678..330720Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1491911889:330386..330459TCONS_00018748-exon-sc0000305-1491911889:330386..330459Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1491911889:330093..330143TCONS_00018748-exon-sc0000305-1491911889:330093..330143Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1491911889:329892..329913TCONS_00018748-exon-sc0000305-1491911889:329892..329913Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1491911889:329616..329724TCONS_00018748-exon-sc0000305-1491911889:329616..329724Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1491911889:329188..329289TCONS_00018748-exon-sc0000305-1491911889:329188..329289Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1491911889:325510..325573TCONS_00018748-exon-sc0000305-1491911889:325510..325573Clytia hemisphaericaexon
TCONS_00018748-exon-sc0000305-1491911889:325192..325227TCONS_00018748-exon-sc0000305-1491911889:325192..325227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:325192..331808 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.7516	34.5697	30.1814	24.8822	67.0252	58.3837	30.7236	38.5628	22.2616	22.533	22.2043	18.1631	15.5063	14.1637	17.3973	25.9093	12.9727	16.2095	8.96489	14.8675	14.0157	12.4558	13.9297	12.1601	6.84465	15.0925	5.10301	6.52701	8.44045	9.91727
Blast
[Close]
BLAST of TCONS_00018748 vs. Swiss-Prot (Human)
Match: CTL2 (Choline transporter-like protein 2 OS=Homo sapiens GN=SLC44A2 PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 6.063e-36
Identity = 64/172 (37.21%), Postives = 101/172 (58.72%), Query Frame = 3 
Query:  123 KKYDPNFKGPIKNRGCTDVICCVIFGVYMLGMIVIGVVAYVEGDPKRLLYATDSNGKVC---GADIPDKPYLYFFDMTKCLTKGASDPLAFVKQGFTCPTPQVCVKECPNFY----KAGIDKSIPIKDLVCKPSVNVTAQSDLFKLVQNGDCAPYYIETEEVFYRCIPKVAA 617
            +KYDP FKGPI NRGCTD+ICCV   + ++G + +G++A+  GDP++++Y TDS G+ C   G    +KPYL++F++ KC     + PL  ++  F CPTPQ+CV++CP+ Y     A   +        C P         + +++Q+GDC    I ++ +  RC P + A
Sbjct:   16 QKYDPTFKGPIYNRGCTDIICCVFLLLAIVGYVAVGIIAWTHGDPRKVIYPTDSRGEFCGQKGTKNENKPYLFYFNIVKC-----ASPLVLLE--FQCPTPQICVEKCPDRYLTYLNARSSRDFEYYKQFCVPGFK--NNKGVAEVLQDGDCPAVLIPSKPLARRCFPAIHA 178
The following BLAST results are available for this feature:
BLAST of TCONS_00018748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTL26.063e-3637.21Choline transporter-like protein 2 OS=Homo sapiens... [more]
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