TCONS_00018746 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018746
Unique NameTCONS_00018746
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018746 ID=TCONS_00018746|Name=TCONS_00018746|organism=Clytia hemisphaerica|type=transcript|length=1218bp
GAAATTTGTTGGTCAGTGTTTCAAAGAAAGAAATGGGCAAGAAAAAAGga
AAGAAGTATGATCCAAACTTCAAAGGACCAATCAAGAACAGgggTTGCAC
TGATGTTATTTGTTGTGTCATTTTTGGTGTTTACATGCTCGGCATGATCG
TCATTGGGGTTGTTGCTTATGTCGAGGGAGATCCAAAAAGGTTGCTTTAT
GCTACTGATTCAAATGgaaaagtTTGTGGAGCAGACATACCTGACAAGCC
GTATTTGTATTTCTTTGATATGACCAAATGTTTAACAAAAGGAGCAAGTG
ACCCATTAGCCTTCGTAAAGCAAGGATTCACCTGCCCGACACCACAAGTA
TGTGTAAAAGAATGTCCAAATTTTTATAAAGCTGGTATTGACAAATCCAT
TCCAATCAAAGATTTGGTCTGTAAACCCTCAGTCAATGTAACGGCACAGa
gtGATCTTTTTAAGCTTGTACAAAATGGAGATTGTGCACCatattatatt
gagacagaagAAGTTTTCTACCGCTGTATTCCAAAAGTAGCAGCTGATGC
ATTGAAAGCTATTGATGATTTGACTTTGAAAGATCAAGATAACAACAGGA
TTAACTCGACAGATGTCAAAGAGGGACAAAAGTCCATCTCAATCTTGATG
AATCTTCAAAATTTAACAATGCAGATAGCAGATGAGCTAAAAGCAATCTG
GATTTGGCTTTTGATtGGATTTGTCGCAGCAATGATCATTTCGGTGCTTT
ACATTGTTCTTGCCAGATGGATCACCTTTCCACTGGTCATCACAACTGGA
GTTGGTGTGCTTGGCATACTGGGATATGCTACCTACTACACTATCAACCG
ATACATTGAGTTGAAGGAGAGCGGAGAAAGTAAAGAGATTGTTTGGAATT
TCGCCACCAGTATCGATGACTTTCGACGTAATGAAACCACATGGCTTGTC
GTCGgtATAATTTCTGCGGTAACCTTGCTGGTCCTCTTCTTGATCATGCT
GTTTTTATTTCATCGAGTACGAATCGCGTGTGCTCTTATCGCCGAAGCGA
GCAGAGCTGTTTGTTCGATGTTATCCACCTTGTTTTTTCCCATCTTACCA
TGGATATTTCAATTAGCTTGGTTCACGTGGTTCCTCGTCGTTTTATCTTT
TTTGATGTCAAACGGTACTAAGCAATACCAAGTCTCCCATAACGATACAC
TATACAATCTGACAGTTG
Run BLAST on NCBI

transcript from alignment at sc0000305:318756..330872-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018746 ID=TCONS_00018746|Name=TCONS_00018746|organism=Clytia hemisphaerica|type=transcript|length=12117bp|location=Sequence derived from alignment at sc0000305:318756..330872- (Clytia hemisphaerica)
GAAATTTGTTGGTCAGTGTTTCAAAGAAAGAAATGGGCAAGAAAAAAGGT
GAATTTGCTCATGATATATCTAGATTATGATAAAGATGATAGCCTGATCT
GGCCTGAAAGTGTTGAATGAGAGTTTTATCGTTTATTTTTCTTTGTTTTC
AGGAAAGAAGTATGATCCAAACTTCAAAGGACCAATCAAGAACAGGTATG
ATTCTTTAGGTTATTTTTATTATAATATTGCATTATACATAGTATTTTAA
TTTTTGACACAACCATGCAGTCTGTAAAAAAACAGTTGATCAAAATATTT
GAATGAATTTTATAGAAATATTTTCAATAGACACGGTGTTAAGGACAGTT
AAGGAAAGTGAAGACTTTATTGTCCTTTTTTTATTCTAAATTCAATTTTT
TTTTTAATTTTAGGGGTTGCACTGATGTTATTTGTTGTGTCATTTTTGGT
GTTTACATGCTCGGCATGATCGTCATTGGGGTTGTTGGTTAGTTGATTTT
CATTTTCACACAGTTTGAATTATTTTGAGGCTTCATATTATATAATACAT
TAAATTATTCATCTTTCAAGTACTGTGCTAAAACTCTTGGTTTGTTGAGT
GAAATTAACCTCAAGTTAAATTGTTTCATGGATACTATTTTTAAAGTAGG
CCTATGCAAACCCTTTCTAGCAGAAGGATGCTAAGTAATTTTATGCTTCA
TAAGCCCTTTAATTGCATATTTCTTTCAGCTTATGTCGAGGGAGATCCAA
AAAGGTTGCTTTATGCTACTGATTCAAATGGTAAGGTTTTCAGATTCTCA
TTCTTTATGACATTCCTTTGTCCTATATCCAGCTATATCATTTGTCATTT
TTATTTTTTTTGCCATAAAATCATGCTTTTCAATAAATTTTGTTTTGTTT
GATGATATATCTAACAGAATTGCCATTCTCATTAAAATAATATTTTCTTT
TTATTTCAGGAAAAGTTTGTGGAGCAGACATGTAAGGATTGTACATTTTC
TTGATAAACACACCACCCGAATGGCTAGCTATCAAAACTTGTGGAACCCT
TTTACTATCAACATCTTTCTTGAACCTAACTTATTTATAATTGTAAAAAC
TTGAATACTCAAGGGTTTCCTATGTAATCGTTTGTCTTTTCATTTTAGAC
CTGACAAGCCGTATTTGTATTTCTTTGATATGACCAAATGTTTAACAAAA
GGAGCAAGTGACCCATTAGCCTTCGTAAAGCAAGGATTCACCTGCCCGAC
ACCACAAGTGATTTGATAATTATTTTCCTTCCATTTGACTGCTTTTATGC
ATAAAACAATCTACAGAGATACGATTGGGAAACAGCATCAGAACCATTCA
CCTCCCTCTCCTCTTTTCTATTAATTTGTCCTGATTTAAGTNGATTTGAT
AATTATTTTCCTTCCATTTGACTGCTTTTATGCATAAAACTATCTACAGA
GATACGATTGGGAAACAGCATCAGAACCATTCACCTCCCTCTCCTCTTTT
CTATTAATTTGATTTTTTAAGCGAAATTTCAACTACTTTTCCTGAACTAA
AGCAAGAAAGCAAAAAATTTGCTTCAATTTTAGGTATGTGTAAAAGAATG
TCCAAATTTTTATAAAGCTGGTATTGACAAATCCATTCCAATCAAAGATT
TGGTCTGTAAACCCTCAGTCAATGTAACGGCACAGGTATTATTTATTTTA
TCGCTAAAAAGCTTTCAGTCAATTTTATATTTAATTAACCCCTGGCAGCT
GCAATTTTTTTTATAATTGGGTCAGATTAATCTCGTATCAAGGCTTGTTT
AAACTTTGTTTTGCCAGGGGGGGGGTCAAGCAGTTAGTACAAGACATNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTCCCA
CGTCCCAAAATGACAAAAATTTCTTTTGCATTTGAAACGAAATTTCTAGT
GATCTTCAGTGGCTAGTAATTAGCCTTTAAAGTGTGTGAAATATTGTGGC
TAATTTTTTGAGTGGCTAATTCTACCAACTAGTTTCAAAAAGGTGTAGCA
GCTTCAATTTAAAAGATCAGTCACCCAAATTTTGCACTGGTTATATTGAA
TAATAAAGTTTTGAGATTATGTGAAAAAATGAGGGCTATTGATCCTTGAA
AGTGAAATAATGTGGTTAATAGACTTAAAATGCACCCAGAGACAAAAGTA
TTGAATAAAAAAGTATAATCGTGGAATTTGAATTTTTTTTGCTTGAGATG
ATACTTATTGAATGGTTTTGTTTTCATTTTCTAAGGATACAGCATCAGAA
ATGTGAATTTAAGTGGCTAAATTCTCCTTGCAATTGTGATGTTTGACTTG
AGGAAAAACGTTTCAACAGGCATTTTACGTACTGACTTTATTCACCATGT
AAAAAAGCTGTAGTTATGAAATTTTGGGATATTGTGCTAAATATGTGGCT
AATTCAATAAGAAACACTTTTTGTAATACTTCCTGTATGATTTTGTGTTA
AAATGTGTGGTTATTTGCATACTTAAGTAACTAGTAGTTTTTCTTCATTT
TAAGCCTAATTTATAGATTTTCCCTGTCATTTATTGTCACAATTAATCAC
ATATCAATTTTAAAGAAAGGCATGCAAGTTATCAAAAGAAAGCCAATGAC
ATTTTTGAAAGTTTCAACAAGGTTATTTTTTTCACTCACGATGTGAAAAA
ATGTGGGTAGCCTTTTTAACAATCCAGAAATCTTAGTAAGTCTTTTTAGC
CACGTAGAATCACAGGGCAACTATTAGTTGATACTTTTGAATTCAGAAAG
TGAAAATTTGATCATCAAGCTATAGTCTCATACAATTCAGGTCTTTGGAA
TTCTTTTGTGAATGGGTGTGGCTACCATTTAAAATAAGGACCTTTTTTCA
AAAAAGTGTTTTTTATTAGCCGCATGATTTCACAAATTAGTAAGTAAATA
CTTCAAATATGTTCTATTTTTTACTAATTTTTCAAGAACACCAGATTCAT
TATTTTCATCACTAGTCTTTATTTGCTATATTGTTTTTTTAATTATTGAA
AAAATATCAATACAGCGAGTTCGAGCCACAATTTTTCACATTTACCACTT
GAAATTCTTTCACATAAGTATATCTTAGAAAAATTCAATCTGCGATCTTC
AACTTTGAACCAGTTCCAAATATGGATATTCAATATGTGCTTAATTGAGG
CTATTTCAAAAAATGATAGAAAAAGGGTAATATTAGCCTCAAAACTACAC
ATTTTGATAAAAAAGGAATTCCAGTGAATTCCTAGAGTCCTAATCCACAA
TCCTGTATTTTCCCCTCTCTCATGAAACATTTGCTAAGAAGTTACAAGAC
ATTATCCAAAATCAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNACGAACTTTTACAATTTCAAAATCGATCTGACTTTT
TTCTTTTATTTATCAATCTATAGTTAGGGAATTCCCCTGATATAGTGTTT
AACTAAAGGGTAATACAAAACAAACTCCAAAGGGGAAGGCTTAAATGTCT
TAGGTTCTTTGATTTCTCTTATGGAGGGGGATTTTCCTGATTGCTTTTAG
TATTTATTTTTAATATTTTTCTAGAAAAGGTAAAAAAGTAGCACTTAGTA
TTCATTTGTACTAACTGTTATCCTAGATTTTTTACTTGACACCACCCTAG
CAGTCACTTAGTACCATCAAGTACTAACTGATTTTTGAAAATTTTGTAGG
TATACCACCACGGTACTAACCGGCATGATGTCTTGTACTAACTGCTTGAC
CCCCCCCTGGTTTTGCATCCATTTGGTCATAGTGTAGTTATTTGTTAATT
CCTGATTAAAGTATCGTTATGAATAGTACACTTTCAATAATTGCACTTGG
TTTGGCTGCTTTTTGATGACTTCTCCCAAATTGCAAATTTCTTTTTCAGA
GTGATCTTTTTAAGCTTGTACAAAATGGAGATTGTGCACCATATTATATT
GAGACAGAAGAAGGTTTGTTACATTTTCTTGTTAGATTGTTCTAATTTTT
GGCTGAGCATTGAAATTTTCAGTTATTTTAAATGTTATTTTAAAAAGAAT
CTTCCCGTGTCCAGCCATGTTCTCCATGATGTTCTTATTTTGTTAAACTT
CAGTTTGAATTTTCTTGTATACTGGTTTCAAATGAAAAAGCTAGTCCAAA
AATCTATTCCATCAAAAGTTTCAGTAATTCACCCTCAAGATTATACTCAA
GAACAAAATAGAAGATTATACAATAATTCTGATTTTTATTCTCAGTTTTC
TACCGCTGTATCCCCAAAGTAGCAGCTGANGAAGATTATACAATAATTCT
GATTTTTATTCTCAGTTTTCTACCGCTGTATTCCAAAAGTAGCAGCTGAT
GCATTGAAAGCTATTGATGATTTGACTTTGAAAGATCAAGATAACAACAG
GATTAACTCGACAGATGTCAAAGAGGGACAAAAGTATGAACTGTTTTGCC
TTTTTCCATCAATAGAATTCAAATTTAGTCCCCTGAAACAGCAATCGATG
CTCACTTTCCATAATTCTCTTTAGATCAGAAATAACTGCTGAGATGATAT
GGTGATATTATTCCTTCTTTTTTCCATCTTAGGTCCATCTCAATCTTGAT
GAATCTTCAAAATTTAACAATGCAGGTATGTGTATTTGTAATCTTTAATC
TTGATTTTGAGATTTTGTATGGAATAGAAAGTTTCTTTAACTATGAAATT
AAATCTTCTAATATTGTACCCTGAAAATATTTTATCTTATCTTCCCAGAT
AGCAGATGAGCTAAAAGCAATCTGGATTTGGCTTTTGATGTAAGTTAACT
ATTAACATATGATTGTTTTTCCTGCTATGCTGACAGTGAGCCTTTCAAAT
TTTTTGAAATCTTTTTACCTATGATTATGATTGAACATGATAGAGGGTCA
ATCCTTAGTCAGACCACCCAGAAATCTCACCTAGCTCCAAACATAGGAAG
AAACCCTGAAACATAAATCAGTAAATCAAGTGCCTAATTCATTTTACTTT
TTAGTGGATTTGTCGCAGCAATGATCATTTCGGTGCTTTACATTGTTCTT
GCCAGGTAATTCTCTTTCTCTAGCTTCTGTACCAGACCCGATATCTCATA
TTTCGAGACCTTTTGTTGTAAGAATGTTTGTTGTGATTCATTGCCTGTTT
CTGGTTTGAGATTTTGCAAACCAAGTATGTAGAAGATGCACTCTCTCATC
CTGTCTCATCGCACCGTTAAAAATTCAGCAGAGAATTTTTCATAAAAAAT
AATCGGCAAATCAGCAGTGTGAACAGACTTATGGTGTTGGTGAGAAGATA
AAACTTATAAGTATTCATTAAAGCTATTAAATATGTCAAAGGTAATACAT
CTTTTTATTTCATATAGATGGATCACCTTTCCACTGGTCATCACAACTGG
AGTTGGTGTGCTTGGCATACTGGGATATGGTATGCTTGTTGTCTTTAATA
TTTTCCTAAATTTTACCTTATTTCTTTCATCTAAAACCTGTTTCATTGCC
AAAGGAGTCGAGTAGATATTGATTGACCAATCTTCTATTATAATTCCAAG
CCTAGTAAAATTCCTAAAACAGTGTATATCAAATAACATAACTTTTTGAG
GGACATTTTTGTAGCTTTTTTTGTTTTAAGGTGTGCTTCGCTCGACGTCT
TCAACTTAAGAGCCGCAAATCCATAATCATGGGCATTGCAATTTTATAAC
TGAAAGTTGTATTACTGTAACTCACAATTCATTTATTATGATAGCTACCT
ACTACACTATCAACCGATACATTGAGTTGAAGGAGAGCGGAGAAAGTAAA
GAGATTGTTTGGAATTTCGCCACCAGTATCGATGACTTTCGACGTAATGA
AACCACATGGCTTGTCGTCGGTAAGACTACGTTCACACGCTACGGCTCCG
TTCCGCTCCGAAACGAAGTGAAGCCATTCTATTGGTTACATTGAAGTTTT
ACATCACTTGTAACCAATAGAATGGTTTTGGAATCGTTACGTGCGAACAT
GCTCTAAGTCTTGCAATCCTGATTGGTTAGGGTCTATCTGTTGAGGAATT
GAGAATATTTCTCTCTGCTAAAAATTATTTTCCTATAACAGGTTTGAAAT
TCTTCTCTATAGTTAATCCAAACCTCATTTCAACTTTTCATTAGTGTTTT
GTTTTTTCTAGTTTTGTCAGACATCAGAAGCGTATCAGGAAAGAAAGTGT
AGCATAACATTAACAGTTGATCAAGGGTAACATTCACTGACCTTTATAAA
TTCCTGGACCAATCTATATCCGCCATCTTTGATCGAAGTTTTTTTTGAAT
TGGTACCCGTAAAAAAGCCATCGCAGTGTTAAAAATTAACGTCTAACGGC
GCTACGTCATCAAAAGTTTTCGAGGGAAAGTAGATCTAGCGCTCTCGATC
CATTTACACCGCTGTTGAGTAGTGCCGCCATTAGGGTACCACTTTTCAAA
AAACTCCGATCAAAGATTTTGCTTGGTCAGGGATTGAGAAACTGGGTCCA
GGGTATATAAAGGTCAGTGGTAACATTGTACGGTCAGGTGTTATTTTATA
TGATTTTCAAATTTATTATCTTAGGTATTTTTCAGCTTTTCAAGTTAATT
GTATTTTAGTAATTGTTTATAGTTGATAGGGTATTACACTGCTACTTCGT
CGAGTTAGTCTTCTCCTTCGTTCGAGTTGGTCTTCTCCTAGTTATTGTGG
TCGTTCTTTTAGTTGGTTATATAATAAAGTTAAGAATTTAGAAACAAATA
TAAATGTTCGAATTTTCTATACTCCGTTTTTCTTTATTTCAGGTATAATT
TCTGCGGTAACCTTGCTGGTCCTCTTCTTGATCATGCTGTTTTTATTTCA
TCGAGTACGAATCGCGTGTGCTCTTATCGCCGAAGCGAGCAGGTTAGGGG
TATTATTTTTTTAGTTAAAAAAAAATCTTCAGTTTTATTGTTAGGGTGCT
CTTTCTTGTATGGTCAGGGAGCGCGGTCGCCTTATCGCTTTCTTAACGCG
TGTTATCCAACAGTACCCAAACTGTTTATGAGTCTTGCGACCGGTAGAAT
GGTTCAATGGTTCAAACGAAAGGAAAAACATCGAGAATTGTAGTGAGATG
AAAAGCATTTCTTTACGGACGAACTAATTTTTTCATAACCAATACAAAAG
AAAAAGCTAATAATGACATTTTTTGAAAACTCAACTTCTGTCCGGCTGAT
GTCGAAGGTGATACACACTCAGGAAGAGGTAAAAGACTCAGACAATTAGT
ATCATTATGACTGATTTCTGTTGGTTCAGTACACTCGGTTCCAGTCCATC
CAAGATGACATTGACAAACTCCGTGTTGAGTGCATTCTCCGTTGGTTGTG
TTGCAAGCCGAGCAATTGGATTTGAATGTAGGATACTGGACACATTTTTG
ATTCTGACAAACACCGTTTTGGTTACAAGGAGTCCCTTCATCAACCAAGA
CTACGTACGATTGATAAAAAATGAAACAAAAAATTTATTTTTGGTCGGAT
GTTGATTTCAACGAACGAACTGGTGGACTTGAGTATAAAAATCTAGATCA
AAATCTAAGAATAAACTACAATGTTGTATTTTCTCAAACATTTGAAGACT
GGTAAACAACATGGGATTCCTGTCTTTTTTGGGGGAATAGCTGGAGTAGT
TTTTCCTTGTTTTGAGACATAAAGTAGACAGTTTTATGTCAAGCCAGCTA
CCTTCAGCTTCGCCAAAAATTTCTAAACAAACACGTGACCCCGTAACAAA
GAAAAGAGACAAACCTTTGACGCTCATATCTCTTGTTAAAATCATGGATC
CCAGTCTGCATTTGTATTGACTCTCATTATAATAAACAGTAGCTGTCATG
GAGCCTCTCATCCAACCCTGGAGTGGGAATATGATGTCTGGTTCAGTGCA
ATGAAGTCTGCCACACTCGATGTCTCCTTTTGCGCATGCTTTATATGTTC
CCCCAACAATTCCACAATTTCCATGGTCCTCACCTGAAAAAGAAAACAGT
TTAAATAAATAAAGAAAATGAAGAATAATACTAATTCATTCATATCTTTG
AATATGGACAACGGTCTTCTTCCGAATTAATTTATTTGTACAAATGCGAT
CATAGATAACTCGTAAATGACATATCTTTTGCCAGCTTTAACGTTTAATT
GCTGATCAGGAAGTCAACCATCATATCATGGTAGCTTTCCTGAATCTGTT
CTAGTCATCTAGTAATGCATTTCCCAATCATAAACGTGACTGTACGCAAT
GAAGGGGGAGAGGGGATTTAGCAAAATCCAACGTCTATTTTTTGAATGTT
CTCTATGTGCAAGAGGAGACTGGGTGTCTGATATTTGGCCTAACTGTTAT
TCCACTTTTGCAGCAATGTTTGTACCAACCTTTTGTATTGAGTTTGTAGC
ACTCGTTATGTGCTTTTGTGATATTAGCTCCCCAAATAGCTTCACATTGT
TCCGTATGTGATTTGCATTTTCCTTTATAACAATGTCCGCTATCGTTACC
GCAAGGTGTTCGGTCTTCTTTGTATGTGTCCGGACAAAGAACGGACTCAC
CATCGCAGTAATCTACCAGATCGCAATGTTGATCTATCGGATTCCGACAA
CAAGAACCTTTAGAGAGAATTTTACAGTGTCGACAACACGCTCCTTCAAA
ACATTCAGAACCTTCAGTTAGCTTGCATGTGTTTGGATTGCAACAAGGAT
TAGTACAGAAAGCTGGGTCACCGCAGTCGCATTCTTCGCCAGGGTCTAAT
TGGTTGTTACCACATGTTATTGATACGTTATTCATGGTGATATCAGGCAC
ATTCACCAAACAGTCTTTTCGGAAAGTCTTCATGTATCCTGCAATACTTT
GTACACTACAGGTGGAGAATTTCTGTGGTACTTTGACCGGCATTCTAGTA
CTCATTATACACTCTGTGTTATGGTCATCAGAACATACGCACGTTGGAAC
ATCGTGAGTCATATTCAGATTATGACCTAATTCATGAGCCAGTATAGACG
CCGTTTGTGCTTCTGTGAATGACGGATAATTTACGGTCATCCCAACCGAA
TGCAGTGGTGAGCATAACGTACCGAGGTAGGCTATCCCGATGACACCACT
GCCAAAAGGACCGTGACCGGTCATTAAGTGAACATGGTCTGCAATTTTGA
ACTTTGGCCCTTGTAGTTGAATACCCATGTATAATGAACTGTATTGGTCA
GACCGAAACGCTTCTAAGACTTCACCAGAATCATTTGTTATCGTAATCTT
ATCACTGTCTCTCCAAATTTCGATGTTAGTCAAAATGACACGGACATCGT
GTACGCGAAAAACGGTGTCAACGTGATTCACGATTCGATTCAAGTACTCT
TTTAACTTCTGCTCGTCACGATTTAAATTTTCATAGAGTTTCTTGTCAGC
AACGAACCCTAACTCGATGTAATACGTTTGTTTACTTATCGAATGTGGGA
CATGGCGTCGTTGTCTTTTGTGAGTAAAACTGGTTACAAGAGGTGGTATT
CTTTGTGCAAATGTGGTCGCGCGATGCTGTTTCTCGTGGACGACTCCAGT
CTCCCGACGTCGTCTGACATGTGCAAAATCACTCAGTTGGCTTTGTTCAT
ATTTATTTTCTCCAGAGTTGTTATCAGAATGATTCAAGCTAGTTATATAC
AATGTAGATGAAATATCAACTGGAGCAGCGTTGTAAGAATTCCTTGCATT
CGTGATATTAGGAGCAGTACTAGATAGCTGATGACCAGCTGATATAAGCT
TTTCAGTTACTAAAGTTGCTTGAATTGATGAAATAAACACGGCAAGCGAA
ATGATCGTAAAGGAGACCATTTTTCACCAAAACACAAGATTTTTCGAAGA
GCGTCAATCACTCTTGTCGAAATATATCTTTTTTTTTACATGAAATAATT
TTCGAGAAAATTTTTATTTGACGTCACAATGTGAAATCAAACAGATAGTC
GAAGGTGTAACACAGGCCTTAGATTTTGCTAAATATATCCATTGGGTCCA
TTTTTCCTCAAAAGGACACTTGCCCCTTGCCCCCTGGACAATTACTCCTG
ACAGTTGCAGACAATTAACCTATCCTAGGAAAAAAATGACTAAGATTCGC
TGAAAATTCTCCAGCCTGAACAAATGTTTATTGATCCGATAAACTTTGGA
CCATGATATCAATATTTAGGCCCTAGCACGTCACTGTACCCGAATTTTTG
AGTTAGATAAACAACGCCTGCCATTATCTTCGTTTGAGCATATATGTAAC
TTTATCAACGGGCTCTAAACTAATATCATTGTTCTGTCTATCTTTTTACA
GAGCTGTTTGTTCGATGTTATCCACCTTGTTTTTTCCCATCTTACCATGG
ATATTTCAATTAGCTTGGTTCACGTGGTTCCTCGTCGTTTTATCGTATCC
TTTTCATAATAAAGTAACACGACGTCACTGTAAGGGCCAGTTTCATTTTC
TAAGCCTATTTTTAACACTGTGCGTAAAAGTTCTCAATCGCTTTTCAGAG
AGTTTTGATTTGCAAGTATATACTGTGGTTCGACATGTACCACATTTGCA
TTCTTTCAAATCAGAATATACCATAAAGGATTCGTACCATTTTTTTTAAC
GCTGGGTATATAATTTTTCTTTAACCTCGACATAAATAATTAATAGTTTT
TTGATGTCAAACGGTACTAAGCAATACCAAGTCTCCCATAACGATACACT
ATACAATCTGACAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010492XLOC_010492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018746-exon-sc0000305-1575043694:330825..330872TCONS_00018746-exon-sc0000305-1575043694:330825..330872Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:330678..330720TCONS_00018746-exon-sc0000305-1575043694:330678..330720Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:330386..330459TCONS_00018746-exon-sc0000305-1575043694:330386..330459Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:330093..330143TCONS_00018746-exon-sc0000305-1575043694:330093..330143Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:329892..329913TCONS_00018746-exon-sc0000305-1575043694:329892..329913Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:329616..329724TCONS_00018746-exon-sc0000305-1575043694:329616..329724Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:329188..329289TCONS_00018746-exon-sc0000305-1575043694:329188..329289Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:325510..325573TCONS_00018746-exon-sc0000305-1575043694:325510..325573Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:325040..325157TCONS_00018746-exon-sc0000305-1575043694:325040..325157Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:324848..324890TCONS_00018746-exon-sc0000305-1575043694:324848..324890Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:324684..324724TCONS_00018746-exon-sc0000305-1575043694:324684..324724Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:324418..324468TCONS_00018746-exon-sc0000305-1575043694:324418..324468Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:324044..324105TCONS_00018746-exon-sc0000305-1575043694:324044..324105Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:323603..323728TCONS_00018746-exon-sc0000305-1575043694:323603..323728Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:322581..322680TCONS_00018746-exon-sc0000305-1575043694:322581..322680Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:319079..319171TCONS_00018746-exon-sc0000305-1575043694:319079..319171Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1575043694:318756..318826TCONS_00018746-exon-sc0000305-1575043694:318756..318826Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:330825..330872TCONS_00018746-exon-sc0000305-1510915933:330825..330872Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:330678..330720TCONS_00018746-exon-sc0000305-1510915933:330678..330720Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:330386..330459TCONS_00018746-exon-sc0000305-1510915933:330386..330459Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:330093..330143TCONS_00018746-exon-sc0000305-1510915933:330093..330143Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:329892..329913TCONS_00018746-exon-sc0000305-1510915933:329892..329913Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:329616..329724TCONS_00018746-exon-sc0000305-1510915933:329616..329724Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:329188..329289TCONS_00018746-exon-sc0000305-1510915933:329188..329289Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:325510..325573TCONS_00018746-exon-sc0000305-1510915933:325510..325573Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:325040..325157TCONS_00018746-exon-sc0000305-1510915933:325040..325157Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:324848..324890TCONS_00018746-exon-sc0000305-1510915933:324848..324890Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:324684..324724TCONS_00018746-exon-sc0000305-1510915933:324684..324724Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:324418..324468TCONS_00018746-exon-sc0000305-1510915933:324418..324468Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:324044..324105TCONS_00018746-exon-sc0000305-1510915933:324044..324105Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:323603..323728TCONS_00018746-exon-sc0000305-1510915933:323603..323728Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:322581..322680TCONS_00018746-exon-sc0000305-1510915933:322581..322680Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:319079..319171TCONS_00018746-exon-sc0000305-1510915933:319079..319171Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1510915933:318756..318826TCONS_00018746-exon-sc0000305-1510915933:318756..318826Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:330825..330872TCONS_00018746-exon-sc0000305-1491911889:330825..330872Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:330678..330720TCONS_00018746-exon-sc0000305-1491911889:330678..330720Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:330386..330459TCONS_00018746-exon-sc0000305-1491911889:330386..330459Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:330093..330143TCONS_00018746-exon-sc0000305-1491911889:330093..330143Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:329892..329913TCONS_00018746-exon-sc0000305-1491911889:329892..329913Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:329616..329724TCONS_00018746-exon-sc0000305-1491911889:329616..329724Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:329188..329289TCONS_00018746-exon-sc0000305-1491911889:329188..329289Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:325510..325573TCONS_00018746-exon-sc0000305-1491911889:325510..325573Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:325040..325157TCONS_00018746-exon-sc0000305-1491911889:325040..325157Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:324848..324890TCONS_00018746-exon-sc0000305-1491911889:324848..324890Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:324684..324724TCONS_00018746-exon-sc0000305-1491911889:324684..324724Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:324418..324468TCONS_00018746-exon-sc0000305-1491911889:324418..324468Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:324044..324105TCONS_00018746-exon-sc0000305-1491911889:324044..324105Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:323603..323728TCONS_00018746-exon-sc0000305-1491911889:323603..323728Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:322581..322680TCONS_00018746-exon-sc0000305-1491911889:322581..322680Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:319079..319171TCONS_00018746-exon-sc0000305-1491911889:319079..319171Clytia hemisphaericaexon
TCONS_00018746-exon-sc0000305-1491911889:318756..318826TCONS_00018746-exon-sc0000305-1491911889:318756..318826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:318756..330872 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.2061	29.0681	24.5891	19.777	5.50709e-07	0	0	0	9.88984	7.38571	4.03709	9.18864	8.79757	10.728	10.5525	11.0835	1.07036	4.01559	6.90684	18.5869	11.0852	8.30357	10.6945	14.1017	0.214558	4.87169e-10	6.50507	2.77195	8.63504	7.83238
Blast
[Close]
BLAST of TCONS_00018746 vs. Swiss-Prot (Human)
Match: CTL2 (Choline transporter-like protein 2 OS=Homo sapiens GN=SLC44A2 PE=1 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 3.614e-56
Identity = 129/396 (32.58%), Postives = 217/396 (54.80%), Query Frame = 3 
Query:   57 YDPNFKGPIKNRGCTDVICCVIFGVYMLGMIVIGVVAYVEGDPKRLLYATDSNGKVC---GADIPDKPYLYFFDMTKCLTKGASDPLAFVKQGFTCPTPQVCVKECPNFY----KAGIDKSIPIKDLVCKPSVNVTAQSDLFKLVQNGDCAPYYIETEEVFYRCIPKVAA--DALKAIDDLTLKDQDNNRINSTDVKEGQKSISILMNLQNLTMQIADELKAIWIWLLIGFVAAMIISVLYIVLARWITFPLVITTGVGVLGILGYATYYTINRYIELK-ESGESKEIV-WNFATSIDDFRRNETTWLVVGIISAVTXXXXXXXXXXXXHRVRIACALIAEASRAVCSMLSTLFFPILPWIFQLAWFTWFLVVLSFLMSNGTKQYQVSHNDTLYNL 1211
            YDP FKGPI NRGCTD+ICCV   + ++G + +G++A+  GDP++++Y TDS G+ C   G    +KPYL++F++ KC     + PL  ++  F CPTPQ+CV++CP+ Y     A   +        C P         + +++Q+GDC    I ++ +  RC P + A    L   ++ T +D   +R N TD+ EG K  + ++  + L M+I ++    W W++IG V AM +S+L+I+L R++   +V    + V+ +LGY  ++    Y  L+ E+G    +V   F T    +     TWL   II ++  +++ L+++FL  R+ IA ALI EASRAV  ++ +L +P++         T+FL+ L       T  +  + N+ +Y +
Sbjct:   18 YDPTFKGPIYNRGCTDIICCVFLLLAIVGYVAVGIIAWTHGDPRKVIYPTDSRGEFCGQKGTKNENKPYLFYFNIVKC-----ASPLVLLE--FQCPTPQICVEKCPDRYLTYLNARSSRDFEYYKQFCVPGFK--NNKGVAEVLQDGDCPAVLIPSKPLARRCFPAIHAYKGVLMVGNETTYEDGHGSRKNITDLVEGAKKANGVLEARQLAMRIFEDYTVSWYWIIIGLVIAMAMSLLFIILLRFLAGIMVWVMIIMVILVLGYGIFHCYMEYSRLRGEAGSDVSLVDLGFQTDFRVYLHLRQTWLAFMIILSILEVIIILLLIFLRKRILIAIALIKEASRAVGYVMCSLLYPLV---------TFFLLCLCIAYWASTAVFLSTSNEAVYKI 395
The following BLAST results are available for this feature:
BLAST of TCONS_00018746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTL23.614e-5632.58Choline transporter-like protein 2 OS=Homo sapiens... [more]
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